View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_405 (Length: 230)

Name: NF10140A_low_405
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_405
NF10140A_low_405
[»] chr8 (4 HSPs)
chr8 (1-230)||(32116306-32116529)
chr8 (144-220)||(15337040-15337112)
chr8 (144-220)||(15426105-15426177)
chr8 (144-220)||(15517409-15517481)
[»] chr2 (5 HSPs)
chr2 (136-216)||(28568054-28568130)
chr2 (144-220)||(37130130-37130202)
chr2 (146-220)||(22707901-22707971)
chr2 (149-220)||(23870853-23870920)
chr2 (135-220)||(21256803-21256884)
[»] chr1 (1 HSPs)
chr1 (136-220)||(4230193-4230274)
[»] chr3 (2 HSPs)
chr3 (137-220)||(43135917-43135996)
chr3 (167-220)||(132776-132829)
[»] scaffold0190 (1 HSPs)
scaffold0190 (144-220)||(7146-7218)
[»] scaffold0077 (1 HSPs)
scaffold0077 (136-220)||(12042-12122)
[»] chr7 (1 HSPs)
chr7 (144-220)||(13346932-13347004)
[»] chr6 (2 HSPs)
chr6 (137-219)||(11793823-11793901)
chr6 (176-220)||(18258442-18258486)
[»] scaffold0480 (1 HSPs)
scaffold0480 (136-213)||(3430-3503)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 32116306 - 32116529
Alignment:
Q  1 atagtggtgatcaacacggggcttaaatttttaacgtataatgtctcaactccaaaataatatctatcacttgacatattgatcccaacgacacagagct 100  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||    
T  32116306 atagtggcgatcaacaccgggcttaaatttttaacgtataatgtctcaactccaaaataatatctatcgc-tgacatattgatcccaacgacatagagct 32116404  T
Q  101 ttagtttannnnnnnacatatattacctcatctccaaaggttctcatttaatgcagtcaaaatagctaggttgatcttatcatcgaagaaattgttttct 200  Q
    ||| ||||       ||||||||| |||||||||||||| || |||||||||||||||||||    || |||||||||||| ||||||||||||||||||    
T  32116405 ttaattta-ttttttacatatattgcctcatctccaaagattatcatttaatgcagtcaaaa----taagttgatcttatcgtcgaagaaattgttttct 32116499  T
Q  201 cattcctatcgaagttggacctatagttga 230  Q
    ||||||||||||||||||||||||||||||    
T  32116500 cattcctatcgaagttggacctatagttga 32116529  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 15337040 - 15337112
Alignment:
Q  144 tcatttaatgcagtcaaaatagctaggttgatcttatcatcgaagaaattgttttctcattcctatcgaagttggac 220  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15337040 tcatttaatgcagtcaaaatag----gttgatcttatcatcgaagaaattgttttctcattcctatcgaagttggac 15337112  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 15426105 - 15426177
Alignment:
Q  144 tcatttaatgcagtcaaaatagctaggttgatcttatcatcgaagaaattgttttctcattcctatcgaagttggac 220  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15426105 tcatttaatgcagtcaaaatag----gttgatcttatcatcgaagaaattgttttctcattcctatcgaagttggac 15426177  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 15517409 - 15517481
Alignment:
Q  144 tcatttaatgcagtcaaaatagctaggttgatcttatcatcgaagaaattgttttctcattcctatcgaagttggac 220  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15517409 tcatttaatgcagtcaaaatag----gttgatcttatcatcgaagaaattgttttctcattcctatcgaagttggac 15517481  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 28568130 - 28568054
Alignment:
Q  136 aaaggttctcatttaatgcagtcaaaatagctaggttgatcttatcatcgaagaaattgttttctcattcctatcgaagtt 216  Q
    ||||||| ||||||||||||||||||||||    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  28568130 aaaggttatcatttaatgcagtcaaaatag----gttgaccttatcatcgaagaaattgttttctcattcctatcgaagtt 28568054  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 37130130 - 37130202
Alignment:
Q  144 tcatttaatgcagtcaaaatagctaggttgatcttatcatcgaagaaattgttttctcattcctatcgaagttggac 220  Q
    ||||||||||||||||||||||    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37130130 tcatttaatgcagtcaaaatag----gttgaccttatcatcgaagaaattgttttctcattcctatcgaagttggac 37130202  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 22707901 - 22707971
Alignment:
Q  146 atttaatgcagtcaaaatagctaggttgatcttatcatcgaagaaattgttttctcattcctatcgaagttggac 220  Q
    ||||||||||||||||||||    ||||| ||| ||||||||||||||||||||||  ||| |||||||||||||    
T  22707901 atttaatgcagtcaaaatag----gttgaccttgtcatcgaagaaattgttttctctctccgatcgaagttggac 22707971  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 23870920 - 23870853
Alignment:
Q  149 taatgcagtcaaaatagctaggttgatcttatcatcgaagaaattgttttctcattcctatcgaagttggac 220  Q
    |||||||||||||||||    ||||| ||| ||||||||||||||||||||||  ||| |||||||||||||    
T  23870920 taatgcagtcaaaatag----gttgaccttctcatcgaagaaattgttttctctctccgatcgaagttggac 23870853  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 21256884 - 21256803
Alignment:
Q  135 caaaggttctcatttaatgcagtcaaaatagctaggttgatcttatcatcgaagaaattgttttctcattcctatcgaagttggac 220  Q
    |||||| | |||||||||||||||||||||| |    ||||||| |||||||| ||||||||||||| ||  |||| |||||||||    
T  21256884 caaaggctatcatttaatgcagtcaaaatagat----tgatcttgtcatcgaataaattgttttctcttttatatcaaagttggac 21256803  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 4230274 - 4230193
Alignment:
Q  136 aaaggttctcatttaatgcagtcaaaatagctaggttgatcttatcatcgaagaaattgttttctca-ttcctatcgaagttggac 220  Q
    ||||||| ||||||||||| ||||||||||    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  4230274 aaaggttatcatttaatgcggtcaaaatag----gttgaccttatcatcgaagaaattgttttctcatttcctatcgaagttggac 4230193  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 43135996 - 43135917
Alignment:
Q  137 aaggttctcatttaatgcagtcaaaatagctaggttgatcttatcatcgaagaaattgttttctcattcctatcgaagttggac 220  Q
    |||||| ||||||||||||||||||||||    ||||| |||||||| ||||||||||| || |||||||||||||||||||||    
T  43135996 aaggttatcatttaatgcagtcaaaatag----gttgaccttatcattgaagaaattgtcttttcattcctatcgaagttggac 43135917  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 132829 - 132776
Alignment:
Q  167 taggttgatcttatcatcgaagaaattgttttctcattcctatcgaagttggac 220  Q
    |||||||| ||||| ||||||||||||||| |||||||| ||||||||||||||    
T  132829 taggttgaccttataatcgaagaaattgttatctcattcttatcgaagttggac 132776  T

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Target: scaffold0190 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 7146 - 7218
Alignment:
Q  144 tcatttaatgcagtcaaaatagctaggttgatcttatcatcgaagaaattgttttctcattcctatcgaagttggac 220  Q
    |||||||||||||||||||||     ||||| |||||||||||| ||||||| ||||||||||||||||||||||||    
T  7146 tcatttaatgcagtcaaaataa----gttgaccttatcatcgaaaaaattgtcttctcattcctatcgaagttggac 7218  T

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Target: scaffold0077 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 12042 - 12122
Alignment:
Q  136 aaaggttctcatttaatgcagtcaaaatagctaggttgatcttatcatcgaagaaattgttttctcattcctatcgaagttggac 220  Q
    ||||||| | ||||||||||||||||||||    ||||| ||| |||| ||||||||||||||||| ||||||||||||||||||    
T  12042 aaaggttattatttaatgcagtcaaaatag----gttgaccttgtcattgaagaaattgttttctctttcctatcgaagttggac 12122  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 13347004 - 13346932
Alignment:
Q  144 tcatttaatgcagtcaaaatagctaggttgatcttatcatcgaagaaattgttttctcattcctatcgaagttggac 220  Q
    |||||||||||||||||||||| |    ||| ||| |||||||||||||||||||||||||| ||||||||||||||    
T  13347004 tcatttaatgcagtcaaaatagat----tgaccttgtcatcgaagaaattgttttctcattcttatcgaagttggac 13346932  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 11793823 - 11793901
Alignment:
Q  137 aaggttctcatttaatgcagtcaaaatagctaggttgatcttatcatcgaagaaattgttttctcattcctatcgaagttgga 219  Q
    |||||| ||||||||||||||||||||||    ||||| |||||||||||||||||||| ||||| || |||| |||||||||    
T  11793823 aaggttatcatttaatgcagtcaaaatag----gttgaccttatcatcgaagaaattgtcttctcgtttctattgaagttgga 11793901  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 18258486 - 18258442
Alignment:
Q  176 cttatcatcgaagaaattgttttctcattcctatcgaagttggac 220  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||    
T  18258486 cttatcatcgaagaagttgtcttctcattcctatcgaagttggac 18258442  T

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Target: scaffold0480 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 3430 - 3503
Alignment:
Q  136 aaaggttctcatttaatgcagtcaaaatagctaggttgatcttatcatcgaagaaattgttttctcattcctatcgaa 213  Q
    ||||||| |||||||||  |||||||||||    ||||| || |||||| ||||||||||||||||| ||||||||||    
T  3430 aaaggttatcatttaatatagtcaaaatag----gttgacctaatcatcaaagaaattgttttctcactcctatcgaa 3503  T

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