View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_408 (Length: 229)

Name: NF10140A_low_408
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_408
NF10140A_low_408
[»] chr4 (19 HSPs)
chr4 (1-229)||(29123435-29123664)
chr4 (1-229)||(22340576-22340804)
chr4 (1-229)||(4303199-4303427)
chr4 (4-224)||(18116384-18116604)
chr4 (59-229)||(17826778-17826948)
chr4 (1-229)||(8110915-8111143)
chr4 (4-224)||(23158152-23158372)
chr4 (4-224)||(36279205-36279425)
chr4 (4-224)||(51872685-51872905)
chr4 (1-152)||(15705634-15705785)
chr4 (1-229)||(3621499-3621727)
chr4 (25-224)||(12915812-12916011)
chr4 (4-227)||(15649066-15649289)
chr4 (127-208)||(50693772-50693853)
chr4 (127-208)||(36951324-36951405)
chr4 (127-208)||(17469142-17469223)
chr4 (121-192)||(24059760-24059831)
chr4 (1-46)||(17838714-17838759)
chr4 (4-63)||(6614197-6614256)
[»] chr1 (9 HSPs)
chr1 (1-228)||(49369764-49369991)
chr1 (4-224)||(41342810-41343030)
chr1 (28-224)||(27029976-27030172)
chr1 (4-224)||(10003931-10004151)
chr1 (103-192)||(24545091-24545180)
chr1 (124-216)||(28520847-28520939)
chr1 (127-186)||(37668976-37669035)
chr1 (124-191)||(26996083-26996150)
chr1 (1-67)||(5557264-5557330)
[»] chr3 (14 HSPs)
chr3 (1-227)||(23603260-23603485)
chr3 (1-229)||(8595254-8595482)
chr3 (4-221)||(42462720-42462937)
chr3 (4-224)||(23571623-23571843)
chr3 (1-229)||(48547551-48547779)
chr3 (4-224)||(3514684-3514904)
chr3 (4-227)||(17153806-17154029)
chr3 (4-224)||(9819060-9819280)
chr3 (4-179)||(53152132-53152307)
chr3 (60-224)||(42459305-42459469)
chr3 (127-208)||(16664099-16664180)
chr3 (127-208)||(52196409-52196490)
chr3 (127-200)||(39632858-39632931)
chr3 (127-191)||(10754186-10754250)
[»] scaffold0041 (1 HSPs)
scaffold0041 (4-224)||(74298-74518)
[»] chr7 (18 HSPs)
chr7 (4-224)||(40891766-40891986)
chr7 (4-224)||(586784-587004)
chr7 (4-227)||(37075589-37075812)
chr7 (4-224)||(12121586-12121806)
chr7 (4-224)||(24819697-24819917)
chr7 (4-212)||(36575396-36575604)
chr7 (4-227)||(9403131-9403347)
chr7 (4-227)||(34981847-34982070)
chr7 (24-229)||(20705489-20705694)
chr7 (24-229)||(20873533-20873738)
chr7 (127-208)||(22865766-22865847)
chr7 (127-208)||(47548969-47549050)
chr7 (127-208)||(47553412-47553493)
chr7 (124-208)||(27987585-27987669)
chr7 (124-203)||(27869020-27869099)
chr7 (103-208)||(18815411-18815516)
chr7 (124-197)||(8457213-8457286)
chr7 (124-205)||(5196753-5196834)
[»] scaffold0032 (1 HSPs)
scaffold0032 (1-229)||(58393-58621)
[»] chr5 (10 HSPs)
chr5 (1-224)||(11266022-11266245)
chr5 (1-229)||(27891695-27891923)
chr5 (15-223)||(5824972-5825180)
chr5 (4-227)||(6678577-6678798)
chr5 (25-204)||(29150326-29150504)
chr5 (127-208)||(29322916-29322997)
chr5 (124-212)||(31962686-31962774)
chr5 (127-208)||(38931892-38931973)
chr5 (127-205)||(8896369-8896447)
chr5 (4-119)||(10462244-10462359)
[»] chr2 (9 HSPs)
chr2 (1-216)||(38938469-38938684)
chr2 (7-224)||(30275892-30276109)
chr2 (4-227)||(32349874-32350097)
chr2 (15-227)||(23384854-23385066)
chr2 (15-223)||(21963419-21963627)
chr2 (50-223)||(21964639-21964812)
chr2 (4-174)||(27914653-27914823)
chr2 (127-208)||(1258584-1258665)
chr2 (99-207)||(22300858-22300966)
[»] chr8 (6 HSPs)
chr8 (4-224)||(26077728-26077948)
chr8 (36-229)||(31423238-31423431)
chr8 (28-208)||(29532381-29532561)
chr8 (14-208)||(26390260-26390454)
chr8 (127-208)||(10801698-10801779)
chr8 (4-68)||(2959748-2959812)
[»] chr6 (8 HSPs)
chr6 (74-229)||(667335-667490)
chr6 (4-224)||(18295398-18295618)
chr6 (1-229)||(28604884-28605112)
chr6 (28-224)||(2894261-2894457)
chr6 (24-208)||(7218368-7218552)
chr6 (99-224)||(17228031-17228156)
chr6 (127-208)||(5391535-5391616)
chr6 (28-151)||(9759578-9759701)
[»] scaffold0003 (1 HSPs)
scaffold0003 (24-208)||(224744-224928)
[»] scaffold0289 (1 HSPs)
scaffold0289 (103-208)||(11164-11269)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 29123664 - 29123435
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaa 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29123664 aagagccataatcgaccataaaaatcacattgaaaaaacaaatggtctctttcctcctccttaccacacaaggccgcacaagaagtatctgtagcctgaa 29123565  T
Q  101 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaaggg-aaccgctttaagccata 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29123564 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaaccgctttaagccata 29123465  T
Q  200 aaaattgatcaaactctgcagtgatattga 229  Q
    ||||||||||||||||||||||||||||||    
T  29123464 aaaattgatcaaactctgcagtgatattga 29123435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 22340576 - 22340804
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaa 100  Q
    |||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  22340576 aagagccataatcgaccataataatcacattgaaaaaacaaatgatctctttcctcctccttaccacacaaggccacacaagaagtatctgtagcctgaa 22340675  T
Q  101 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22340676 ggacattcctcttgcgaaggttgtcctttgtagcaagtctatttagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataa 22340775  T
Q  201 aaattgatcaaactctgcagtgatattga 229  Q
    ||||||||||||| |||||||||||||||    
T  22340776 aaattgatcaaacactgcagtgatattga 22340804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 4303427 - 4303199
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaa 100  Q
    ||||| |||||| |||||||| |||||||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||||| ||||||||| ||||    
T  4303427 aagagtcataatcgaccataataatcacattgaaaaaacaaatggtccctttcctcctccttaccacacaaggccgcacaagaagaatctgtagcatgaa 4303328  T
Q  101 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataa 200  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4303327 ggatattcctcttgcgaagattgtcctttgtagcaagtctattcagaaaaagacgccaaacaaaaatattaacttttaagggaaccgctttaagccataa 4303228  T
Q  201 aaattgatcaaactctgcagtgatattga 229  Q
    |||||||||||||||||||||||||||||    
T  4303227 aaattgatcaaactctgcagtgatattga 4303199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 18116604 - 18116384
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||| |||||||||| |||||||||||||  ||||||||| |||||||||| |||||  ||||||||  ||  ||||||| |||||    
T  18116604 agccataaccgaccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaggctccacaagaaacattggtagcctcaagga 18116505  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18116504 cattcctcttgcgaagattgtcctttgtagcaaatctattcagaaagagacgccaaacaaaaatgttaacttttaaaggaaccgctttaagccataaaaa 18116405  T
Q  204 ttgatcaaactctgcagtgat 224  Q
    |||||||||||||||||||||    
T  18116404 ttgatcaaactctgcagtgat 18116384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 59 - 229
Target Start/End: Complemental strand, 17826948 - 17826778
Alignment:
Q  59 ccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgcca 158  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  17826948 ccttaccacacaaggccgcacaagaagcatctgtagcctgaaggacattcctcttgcgaagattctcctttgtagcaagtctattcagaaagagacgcca 17826849  T
Q  159 aacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaactctgcagtgatattga 229  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  17826848 aacaaaaatgttaacttttaaggaaaccactttaagccataaaaattgatcaaactctacagtgatattga 17826778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 8110915 - 8111143
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaa 100  Q
    |||||||||||| ||||||||  ||||||||||||||| ||||| |  ||||||||| ||||||||||||||||||| |||||   ||  | | ||| ||    
T  8110915 aagagccataatcgaccataatgatcacattgaaaaaagaaatggtccctttcctcctccttaccacacaaggccgcgcaagacacattggaaacctcaa 8111014  T
Q  101 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataa 200  Q
     ||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||    
T  8111015 agacgttcctcttgcgcaggttgtcctttgttgcaagtctattcagaaagagacgccatacaaaaatattaacctttaatggaaccgctttaagccataa 8111114  T
Q  201 aaattgatcaaactctgcagtgatattga 229  Q
    |||||||| ||||||||||||||| ||||    
T  8111115 aaattgattaaactctgcagtgatgttga 8111143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 23158372 - 23158152
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||| |||||||| ||||| |||| |||||||||||||  ||||||||| |||||||||| || ||  ||||||||  ||  ||||||| ||| |    
T  23158372 agccataatcgaccataataatcatattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaa 23158273  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||    
T  23158272 cattcctcttgcgaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaaggggactgctttaagccataaaaa 23158173  T
Q  204 ttgatcaaactctgcagtgat 224  Q
    ||||||||| | |||||||||    
T  23158172 ttgatcaaaatatgcagtgat 23158152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 36279425 - 36279205
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||| |||||||| || ||||||| |||||||||||||  |||| |||| |||||||||| || ||  ||||||||  ||  ||||||| ||| |    
T  36279425 agccataatcgaccataataagcacattggaaaaacaaatgatcccttttctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaa 36279326  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36279325 cattcctcttacgaagattatcctttgtagcaagtctattcagaaagaaccgccaaacaaaaatattaacttttaagggaaccgctttaagccataaaaa 36279226  T
Q  204 ttgatcaaactctgcagtgat 224  Q
    ||||||||| |||||||||||    
T  36279225 ttgatcaaaatctgcagtgat 36279205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 51872685 - 51872905
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||| |||||||| |||| ||||| |||||||||||||  ||||||||| |||||||| | || ||  || | |||  ||  ||||||| ||| |    
T  51872685 agccataatcgaccataataatcgcattggaaaaacaaatgatccctttcctcctccttaccaaataaagcaccataggaaacattggtagcctcaagaa 51872784  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  51872785 cattcctcttgcgaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggtaccgctttaagccataaaaa 51872884  T
Q  204 ttgatcaaactctgcagtgat 224  Q
    |||| |||| |||||||||||    
T  51872885 ttgaacaaaatctgcagtgat 51872905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 15705785 - 15705634
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaa 100  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||  ||||||||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  15705785 aagagccataatcgaccataataatcacattgaaaaaacaaatgatccctttcctcctccttatcacacaaggccgcacaagaagcatctgtagcctgaa 15705686  T
Q  101 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagag 152  Q
    ||| ||||||||||||||| ||||| ||||||||||||| ||||||| ||||    
T  15705685 ggatattcctcttgcgaagattgtcatttgtagcaagtccattcagagagag 15705634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 3621499 - 3621727
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaa 100  Q
    |||||||||||  ||||||||  ||||||||| ||||| ||||| | |||||||||| ||||||||||||||| ||| |||||   ||  | | ||| ||    
T  3621499 aagagccataaccgaccataatgatcacattggaaaaaaaaatggtctctttcctcctccttaccacacaaggtcgcgcaagacacattggaaacctcaa 3621598  T
Q  101 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataa 200  Q
    | || |||||||| || |||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||||| || |||| ||||||||||||    
T  3621599 gaacgttcctcttacgcaggttgtcctttgttgcaagtctattcagaaaaagacgccatacaaaaatattaacctttaatgggaccggtttaagccataa 3621698  T
Q  201 aaattgatcaaactctgcagtgatattga 229  Q
    |||||||| ||||||||||||||||||||    
T  3621699 aaattgattaaactctgcagtgatattga 3621727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 12915812 - 12916011
Alignment:
Q  25 tcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttgcgaaggttgt 124  Q
    |||||||||||||| ||||  | |||||||||| ||||||||||||||||||||||||||  ||   |||||  |||||||||||| ||||| | |||||    
T  12915812 tcacattgaaaaaataaattgtctctttcctcctccttaccacacaaggccgcacaagaaacattgttagccgcaaggacattccttttgcgcaagttgt 12915911  T
Q  125 cctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaactctgcagtgat 224  Q
     ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| || ||||| | ||| ||| |||||||    
T  12915912 tctttgtagcaattctattcagaaagagacgccaaacaaaaatgttaacctttaacggaaccgccttaagccacaagaattggttaaaatcttcagtgat 12916011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 15649289 - 15649066
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||| |||||||||||||||| ||||| | |||||||||| |||||||||| || |   ||||| ||   |  |||||||  ||||    
T  15649289 agccataaccgaccataataatcacattgaaaaaataaatggtctctttcctcctccttaccacataaagtaccacaaaaaacgttggtagcctcgagga 15649190  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||| ||||||||| || |||||||||||||| | |||||||||||| | |||||||||||| ||||| ||||| || || |||||||||||||| ||    
T  15649189 cattccgcttgcgaagattatcctttgtagcaaggcgattcagaaagagcctccaaacaaaaatattaacctttaaagggactgctttaagccataataa 15649090  T
Q  204 ttgatcaaactctgcagtgatatt 227  Q
     ||||||||||||||| |||||||    
T  15649089 atgatcaaactctgcattgatatt 15649066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 50693853 - 50693772
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| | ||||||||||||||    
T  50693853 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaaccgctttcaaccataaaaattgat 50693772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 36951324 - 36951405
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||||||| | ||||||||||||||    
T  36951324 tttgtagcaagtctattcagaaagagacgccatacaaaaatgttaaccttcaacggaaccgctttcaaccataaaaattgat 36951405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 17469223 - 17469142
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| || || ||||||||||| | ||||||||| ||||    
T  17469223 tttgtagcaagtctattcagaaagagatgccaaacaaaaatgttaaccttcaacggaaccgctttcaaccataaaaaatgat 17469142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 24059760 - 24059831
Alignment:
Q  121 ttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgcttta 192  Q
    ||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||||| | ||||| ||||    
T  24059760 ttgtcctttgtagcaagtctactcataaagagacgtcaaacaaaaatattaacttttaacgaaaccgtttta 24059831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17838759 - 17838714
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgat 46  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||    
T  17838759 aagagccataatcgaccataataatcacattgaaaaaacaaatgat 17838714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 6614256 - 6614197
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctccccctta 63  Q
    ||||||||  |||||||| |||||||||| |||||||||||||  ||||||||| |||||    
T  6614256 agccataaccgaccataataatcacattggaaaaacaaatgatccctttcctcctcctta 6614197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 49369764 - 49369991
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaa 100  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||    
T  49369764 aagagccataatcgaccataataatcacattgaaaaaacaaatgatccctttcctcctccttaccacacaaggccgcacaagaagcatctgcagcctaaa 49369863  T
Q  101 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataa 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49369864 ggacattcctcttgcgaagattgtcctttgtagcaagtctattcagaaagagacgccaaaaaaaaatgttaacttttaagggaaccgctttaagccataa 49369963  T
Q  201 aaattgatcaaactctgcagtgatattg 228  Q
    ||||||||||||||||||||||||||||    
T  49369964 aaattgatcaaactctgcagtgatattg 49369991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 41343030 - 41342810
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||| |||||||||| |||||||||||||  ||||||||| |||||||||| |||||  ||||||||  ||  ||||||| |||||    
T  41343030 agccataaccgaccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaggctccacaagaaacattggtagcctcaagga 41342931  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41342930 cattcctcttgcgaagattgtcctttgtagcaaatctattcagaaagagacgccaaacaaaaatgttaacttttaaaggaaccgctttaagccataaaaa 41342831  T
Q  204 ttgatcaaactctgcagtgat 224  Q
    |||||||||||||||||||||    
T  41342830 ttgatcaaactctgcagtgat 41342810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 27029976 - 27030172
Alignment:
Q  28 cattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttgcgaaggttgtcct 127  Q
    ||||| ||||||||||||| |||||||||| |||||||||| |  ||  ||||||||  ||  ||||||| ||||||||||||||| ||||| || ||||    
T  27029976 cattggaaaaacaaatgatctctttcctcctccttaccacatagagcaccacaagaaacattggtagcctcaaggacattcctcttacgaagattatcct 27030075  T
Q  128 ttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaactctgcagtgat 224  Q
    || ||||||||||||||| ||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27030076 ttatagcaagtctattcaaaaaaagccgccaaacaaaaatattgacttttaagggaaccgctttaagccataaaaattgatcaaaatctgcagtgat 27030172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 10003931 - 10004151
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||||| || ||||  |||||||||||||  ||||||||| |||||||||| |  ||  ||||||||  ||  ||||||| || ||    
T  10003931 agccataaccgaccataaaagtcgcattcgaaaaacaaatgatccctttcctcctccttaccacaaagagcaccacaagaaacattggtagcctcaaaga 10004030  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    ||||| |||| ||||| || ||||||||||||||||||||||||||||| |||||| ||||||| || |||||||| |||||||||||||||||||||||    
T  10004031 cattcttcttacgaagattatcctttgtagcaagtctattcagaaagagccgccaagcaaaaatattgacttttaaaggaaccgctttaagccataaaaa 10004130  T
Q  204 ttgatcaaactctgcagtgat 224  Q
    ||||||||| |||||||||||    
T  10004131 ttgatcaaaatctgcagtgat 10004151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 24545180 - 24545091
Alignment:
Q  103 acattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgcttta 192  Q
    ||||| ||||| ||||| || ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||| |||||    
T  24545180 acatttctctttcgaagattatcctttgtagcaagtctgttcagaaagagacgccagacaaaaatattaacttttaacggaaccacttta 24545091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 28520939 - 28520847
Alignment:
Q  124 tcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaactct 216  Q
    |||| |||||||||||||||||| ||||||||||| ||||| || || || ||||| | ||||||||||||||| |||||||||| |||||||    
T  28520939 tcctctgtagcaagtctattcaggaagagacgccatacaaatatattcacctttaacgaaaccgctttaagccacaaaaattgatgaaactct 28520847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 37668976 - 37669035
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaacc 186  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  37668976 tttgtatcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaacc 37669035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 26996083 - 26996150
Alignment:
Q  124 tcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgcttt 191  Q
    ||||||| | ||||||||||||||||||||||||| |||||||| ||||| ||||| |||| ||||||    
T  26996083 tcctttgcaccaagtctattcagaaagagacgccagacaaaaatattaacctttaacggaatcgcttt 26996150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 5557264 - 5557330
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccac 67  Q
    ||||| |||||| ||||||||  |||||||| |||||||||||| |  ||||||||| |||||||||    
T  5557264 aagagtcataatcgaccataatgatcacattaaaaaaacaaatggtccctttcctcctccttaccac 5557330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 23603260 - 23603485
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaa 100  Q
    |||||||||| | ||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| |||||| ||||    
T  23603260 aagagccatagtcgaccataaaaatcacattgaaaaaacagatgatctctttcctcctccttaccacacaaggccgcacaagaagtatttgtagc-tgaa 23603358  T
Q  101 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataa 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  23603359 ggacattcctcttgcgaaggttgtccttagtagcaagtctattcagaaagagtcgccaaacaaaaatgttaacttttaaaggaaccgctttaagccataa 23603458  T
Q  201 aaattgatcaaactctgcagtgatatt 227  Q
    ||||||||||||||| ||| |||||||    
T  23603459 aaattgatcaaactccgcaatgatatt 23603485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 8595254 - 8595482
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaa 100  Q
    |||||||||||  |||||||| |||||||||||||||||||||| |  ||||||||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  8595254 aagagccataaacgaccataataatcacattgaaaaaacaaatggtccctttcctcctccttagcacacaaggccgcacaagaagcatctgtagcctgaa 8595353  T
Q  101 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataa 200  Q
    ||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  8595354 ggatattcctcttacgaagattgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaaaggaaccgctttaagccatag 8595453  T
Q  201 aaattgatcaaactctgcagtgatattga 229  Q
    ||||||||||||||||||| |||||||||    
T  8595454 aaattgatcaaactctgcaatgatattga 8595482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 42462720 - 42462937
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||| |||||||||||||||||||||||| |||||||||| ||||| || |||||| ||||||||| | || ||||||||||||||    
T  42462720 agccataaccgaccataataatcacattgaaaaaacaaatgatctctttcctcctccttatcatacaaggtcgcacaagatgcatttgtagcctgaagga 42462819  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  42462820 cattcctcttgcgaagattgtcctttgtagcaagtctattcagaaagaaacgccaaacaaaaatgttaacttttaagggagccgttttaagccataaaaa 42462919  T
Q  204 ttgatcaaactctgcagt 221  Q
    ||||||||||||||||||    
T  42462920 ttgatcaaactctgcagt 42462937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 23571843 - 23571623
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||| |||| ||||| |||||||||||||  ||||||||| |||||||||| || ||  ||||||||  ||  ||||||| |||||    
T  23571843 agccataaccgaccataataatcgcattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagga 23571744  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  23571743 cattcgtcttgcgaagattgtcctttgtagcaagtctattcagaaagagacgtcatacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 23571644  T
Q  204 ttgatcaaactctgcagtgat 224  Q
    ||||||||||||| |||||||    
T  23571643 ttgatcaaactctacagtgat 23571623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 48547551 - 48547779
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaa 100  Q
    |||||||||||| ||||||||  ||||||||||||||||||||| |  ||||||||| ||||||||||||||||||| ||||||  ||  | | ||| ||    
T  48547551 aagagccataatcgaccataatgatcacattgaaaaaacaaatggtccctttcctcctccttaccacacaaggccgcgcaagaaacattggaaacctcaa 48547650  T
Q  101 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataa 200  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||||||    
T  48547651 ggacgttcctcttgcgcaggttgtcctttgttgcaagtctattcagaaagagacgccagacaaaaatattaacctttaatggaactgctttaagccataa 48547750  T
Q  201 aaattgatcaaactctgcagtgatattga 229  Q
    |||||||| ||||||||||||||| ||||    
T  48547751 aaattgattaaactctgcagtgatgttga 48547779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 3514684 - 3514904
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||| |||| ||||| |||||||||||||  ||||||||| |||||||||| || ||  ||||||||  ||   |||||| ||| |    
T  3514684 agccataagcgaccataataatcgcattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattgatagcctcaagaa 3514783  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  3514784 cattcctcttgcgaagattatcctttgtagcaagtctattcagaaagaaccgccaaacaaaaatattaacttttaagggtaccgctttaagccataaaaa 3514883  T
Q  204 ttgatcaaactctgcagtgat 224  Q
    ||||||||| |||||||||||    
T  3514884 ttgatcaaaatctgcagtgat 3514904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 17154029 - 17153806
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||| |||||||||| |||||||||||||  ||||||||| | |||||||| || ||  ||||| ||  ||  |||||||  ||||    
T  17154029 agccataaccgaccataataatcacattggaaaaacaaatgatccctttcctcctctttaccacataaagcaccacaaaaaacattggtagcctcgagga 17153930  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||||||||||||| || |||||||||||||||||||||| |||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  17153929 cattcctcttgcgaagattatcctttgtagcaagtctattcataaagagccgccaaataaaaatattaacttttaatggaaccgctttaagccataaaaa 17153830  T
Q  204 ttgatcaaactctgcagtgatatt 227  Q
    |||||||||||||||| |||||||    
T  17153829 ttgatcaaactctgcattgatatt 17153806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 9819060 - 9819280
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||||| || ||||| |||||||||||||   | |||||| |||||||||| || ||  ||||||||  ||  ||||||| |||||    
T  9819060 agccataaacgaccataaaagtcgcattggaaaaacaaatgatccttgtcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagga 9819159  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||||||| ||||| || |||||||||||||||||||||||||| || ||||||||| |||| || ||||||||||||||||||||||||||||||||    
T  9819160 cattcctcttacgaagattatcctttgtagcaagtctattcagaaaaagccgccaaacataaatattgacttttaagggaaccgctttaagccataaaaa 9819259  T
Q  204 ttgatcaaactctgcagtgat 224  Q
    ||||||||| |||||||||||    
T  9819260 ttgatcaaaatctgcagtgat 9819280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 179
Target Start/End: Complemental strand, 53152307 - 53152132
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||| |||||||||||||||||||||||| |||||||||| |||| ||||| || ||  ||||| ||  ||  |||||||  ||||    
T  53152307 agccataaccgaccataataatcacattgaaaaaacaaatgatctctttcctcctccttgccacataaagcaccacaaaaaacattggtagcctcgagga 53152208  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaa 179  Q
    |||||||||||||||| || |||||||||||||||| |||| ||||||| | |||||||||||| |||||||||||    
T  53152207 cattcctcttgcgaagattatcctttgtagcaagtcgattctgaaagagcctccaaacaaaaatattaacttttaa 53152132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 42459469 - 42459305
Alignment:
Q  60 cttaccacacaaggccgcacaaga-agtatctgtagcctgaaggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgcca 158  Q
    |||||||||||||| ||||||||| | | | | |||||| |||||||||||| ||| | | ||||||||||||||||| |||||||||||| ||||| ||    
T  42459469 cttaccacacaaggtcgcacaagatactttgt-tagcctcaaggacattccttttgtgcaagttgtcctttgtagcaattctattcagaaaaagacgtca 42459371  T
Q  159 aacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaactctgcagtgat 224  Q
    ||||||||||||||| ||||| |||||| | ||||||||||| ||||| | ||| ||| |||||||    
T  42459370 aacaaaaatgttaacctttaacggaacctccttaagccataagaattggttaaaatcttcagtgat 42459305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 16664099 - 16664180
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| | ||||||||||||||    
T  16664099 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaaccgctttcaaccataaaaattgat 16664180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 52196409 - 52196490
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||||| | ||||||||||||||    
T  52196409 tttgtagcaagtctattcagaaagaggcgccaaacaaaaatgttaaccttcaacggaaccgctttcaaccataaaaattgat 52196490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 39632931 - 39632858
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| | ||||||    
T  39632931 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaaccgctttcaaccataa 39632858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 10754186 - 10754250
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgcttt 191  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||| || || |||||||||||    
T  10754186 tttgtagcaagtctattcataaagagacgccaaacaaagatgttaaccttcaacggaaccgcttt 10754250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 74298 - 74518
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    |||||||| ||||||||| |||||||||| ||||||||||| |   |||||||| ||||||||||||||||| ||||||||  ||  ||||||| |||||    
T  74298 agccataactgaccataataatcacattggaaaaacaaatggtccatttcctcctccttaccacacaaggccccacaagaaacataggtagcctcaagga 74397  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  74398 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 74497  T
Q  204 ttgatcaaactctgcagtgat 224  Q
    |||||||||||||||||||||    
T  74498 ttgatcaaactctgcagtgat 74518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 40891986 - 40891766
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    |||||||| ||||||||| |||||||||| ||||||||||| |   |||||||| ||||||||||||||||| ||||||||  ||  ||||||| |||||    
T  40891986 agccataactgaccataataatcacattggaaaaacaaatggtccatttcctcctccttaccacacaaggccccacaagaaacataggtagcctcaagga 40891887  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40891886 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 40891787  T
Q  204 ttgatcaaactctgcagtgat 224  Q
    |||||||||||||||||||||    
T  40891786 ttgatcaaactctgcagtgat 40891766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 586784 - 587004
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||| |||||||| ||||||||||||||||||||||||  ||||||||| |||||||||| |||||| |||  |||  ||  ||||||| |||||    
T  586784 agccataatcgaccataataatcacattgaaaaaacaaatgatccctttcctcctccttaccacataaggccccacttgaaacattggtagcctcaagga 586883  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    ||||||| || ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  586884 cattccttttacgaagattgtcctttgtagcaagtctattcaaaaagagacgccaaacaaaaatattaacctttaagggaaccgctttaagccataaaaa 586983  T
Q  204 ttgatcaaactctgcagtgat 224  Q
      |||||||||||||||||||    
T  586984 acgatcaaactctgcagtgat 587004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 37075812 - 37075589
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||| ||||||||||||||||||||||||  ||||||||| |||| ||||| || ||  ||||| ||  ||  |||||||  ||||    
T  37075812 agccataaccgaccataataatcacattgaaaaaacaaatgatccctttcctcctccttgccacataaagcaccacaaaaaacattggtagcctcgagga 37075713  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||||||||||||| || |||||||||||||||| |||| ||||||| | |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  37075712 cattcctcttgcgaagattatcctttgtagcaagtcgattctgaaagagcctccaaacaaaaatattaacttttaaaggaaccgctttaagccataaaaa 37075613  T
Q  204 ttgatcaaactctgcagtgatatt 227  Q
    ||||||||||||||||||||||||    
T  37075612 ttgatcaaactctgcagtgatatt 37075589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 12121586 - 12121806
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||| |||||||| |||| ||||| |||||||||||||   |||||||| |||||||||| || ||  ||||||||  ||  ||| |||  || |    
T  12121586 agccataatcgaccataataatcgcattggaaaaacaaatgatccatttcctcctccttaccacataaagcaccacaagaaacattggtatcctctagaa 12121685  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  12121686 cattcctcttgcgaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggtaccgctttaagccataaaaa 12121785  T
Q  204 ttgatcaaactctgcagtgat 224  Q
    ||||||||| | |||||||||    
T  12121786 ttgatcaaaatttgcagtgat 12121806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 24819697 - 24819917
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||| | || ||||| |||||||||||||  ||||||||| |||||||||| || ||  ||||||||   |  ||||||| |||||    
T  24819697 agccataaacgaccataatagtcgcattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacgttggtagcctcaagga 24819796  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    | |||||||| ||||| || |||||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||    
T  24819797 cgttcctcttacgaagattatcctttgtagcaagtctattcagaaaaagccgccaaacaaaaatattgacttttaagggaaccgctttaagccataaaaa 24819896  T
Q  204 ttgatcaaactctgcagtgat 224  Q
    ||||||||| |||||||||||    
T  24819897 ttgatcaaaatctgcagtgat 24819917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 4 - 212
Target Start/End: Complemental strand, 36575604 - 36575396
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||||| || ||||| |||||||||||||  ||||||||| |||||||||| |  ||  ||||||||  ||  ||||||| |||||    
T  36575604 agccataaacgaccataaaagtcgcattggaaaaacaaatgatccctttcctcctccttaccacatagagcaccacaagaaacattggtagcctcaagga 36575505  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||||||| ||||| || |||||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||    
T  36575504 cattcctcttacgaagattatcctttgtagcaagtctattcagaaaaagccgccaaacaaaaatattgacttttaagggaaccgctttaagccataaaaa 36575405  T
Q  204 ttgatcaaa 212  Q
    |||||||||    
T  36575404 ttgatcaaa 36575396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 9403347 - 9403131
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||| |||||||||| |||||||||||||  ||||||||| |||||||||| || ||  ||||| ||  ||  |||||||  ||||    
T  9403347 agccataaccgaccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaaaaaacattggtagcctcgagga 9403248  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||||||||||||| || |||||||||||||||| ||||||         |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  9403247 cattcctcttgcgaagattatcctttgtagcaagtcgattcaggt-------ccaaacaaaaatattaacttttaaaggaaccgctttaagccataaaaa 9403155  T
Q  204 ttgatcaaactctgcagtgatatt 227  Q
    ||||||||||||||||||||||||    
T  9403154 ttgatcaaactctgcagtgatatt 9403131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 34981847 - 34982070
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||| ||||||||||||| || ||||| | |||||||||| |||||||||| || ||  ||||  ||   |  |||||||  ||||    
T  34981847 agccataaccgaccataataatcacattgaaagaataaatggtctctttcctcctccttaccacataaagcaccacagaaaacgttggtagcctcgagga 34981946  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||||||||||||| || |||||||||||||| | |||||||||||| | |||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  34981947 cattcctcttgcgaagattatcctttgtagcaaggcgattcagaaagagcctccaaacaaaaatattaacctttaaagggaccgctttaagccataaaaa 34982046  T
Q  204 ttgatcaaactctgcagtgatatt 227  Q
     ||||||||||||||| |||||||    
T  34982047 ctgatcaaactctgcattgatatt 34982070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 20705694 - 20705489
Alignment:
Q  24 atcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttgcgaaggttg 123  Q
    ||||||||| ||||||||||| | |||||||||| ||||||||||||| ||||||||||    ||  | | ||| ||| || || |||||||| || ||     
T  20705694 atcacattggaaaaacaaatggtctctttcctcctccttaccacacaaagccgcacaagccacattagaaacctcaagaacgtttctcttgcgcagatta 20705595  T
Q  124 tcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaactctgcagtga 223  Q
    |||||||| ||||||||||||||||| |||||||| |||||||| ||||| || || || || | |||||||||||||||||||  ||||||||||||||    
T  20705594 tcctttgttgcaagtctattcagaaaaagacgccatacaaaaatattaaccttcaatgggactggtttaagccataaaaattgagtaaactctgcagtga 20705495  T
Q  224 tattga 229  Q
    ||||||    
T  20705494 tattga 20705489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 20873738 - 20873533
Alignment:
Q  24 atcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttgcgaaggttg 123  Q
    ||||||||| ||||||||||| | |||||||||| ||||||||||||| ||||||||||    ||  | | ||| ||| || || |||||||| || ||     
T  20873738 atcacattggaaaaacaaatggtctctttcctcctccttaccacacaaagccgcacaagccacattagaaacctcaagaacgtttctcttgcgcagatta 20873639  T
Q  124 tcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaactctgcagtga 223  Q
    |||||||| ||||||||||||||||| |||||||| |||||||| ||||| || || || || | |||||||||||||||||||  ||||||||||||||    
T  20873638 tcctttgttgcaagtctattcagaaaaagacgccatacaaaaatattaaccttcaatgggactggtttaagccataaaaattgagtaaactctgcagtga 20873539  T
Q  224 tattga 229  Q
    ||||||    
T  20873538 tattga 20873533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 22865847 - 22865766
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||| | ||||||||||||||    
T  22865847 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaactgctttcaaccataaaaattgat 22865766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 47548969 - 47549050
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||| | ||||||||||||||    
T  47548969 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaactgctttcaaccataaaaattgat 47549050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 47553412 - 47553493
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||| | ||||||||||||||    
T  47553412 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaactgctttcaaccataaaaattgat 47553493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 27987669 - 27987585
Alignment:
Q  124 tcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||| |||| ||||| ||||    
T  27987669 tcctttgtagcaagtctattcagaaagagacgccatacaaaaatattaacctttaacggaaccgctttatgccacaaaaaatgat 27987585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 27869020 - 27869099
Alignment:
Q  124 tcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||   ||||||||| |||||||||||    
T  27869020 tcctttgtagcaagtctattcagaaagagacgccaaacaaatatgttaacctttaacataaccgcttttagccataaaaa 27869099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 18815516 - 18815411
Alignment:
Q  103 acattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaa 202  Q
    ||||||||||| |  || || ||||||||||||||||||||||||||||||||| | ||||| || ||||| ||||| |||||||||||| |||| ||||    
T  18815516 acattcctcttcctcagattatcctttgtagcaagtctattcagaaagagacgctagacaaatatattaacctttaacggaaccgctttatgccacaaaa 18815417  T
Q  203 attgat 208  Q
    | ||||    
T  18815416 aatgat 18815411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 8457286 - 8457213
Alignment:
Q  124 tcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagcca 197  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||| | |||||||||| ||||    
T  8457286 tcctttgtatcaagtctattcagaaagagacgccagacaaaaatattaacctttaacgaaaccgctttatgcca 8457213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 5196753 - 5196834
Alignment:
Q  124 tcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaatt 205  Q
    |||||||||||||||||||| |||||||| || || | ||| || || |||||||| | || ||| |||||||| |||||||    
T  5196753 tcctttgtagcaagtctatttagaaagagtcgtcagataaagatattcacttttaacgaaatcgccttaagccacaaaaatt 5196834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 58621 - 58393
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaa 100  Q
    |||||||||||  ||||||||   |||||||||||||||||| | |  ||||||||| |||||||||||||||||||||||||| |||  ||||||| ||    
T  58621 aagagccataaccgaccataattgtcacattgaaaaaacaaacggtccctttcctcctccttaccacacaaggccgcacaagaaatattggtagcctcaa 58522  T
Q  101 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  58521 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacctttaagggaaccgctttaagccataa 58422  T
Q  201 aaattgatcaaactctgcagtgatattga 229  Q
    |||||||| ||||||||||||||| ||||    
T  58421 aaattgattaaactctgcagtgatgttga 58393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 11266022 - 11266245
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaa 100  Q
    |||||||||||  |||||||| | |||||||||||||||||||| |  ||||||||| ||||||||||||||||||| ||||||  ||  ||||||| ||    
T  11266022 aagagccataaccgaccataatagtcacattgaaaaaacaaatggtccctttcctcctccttaccacacaaggccgcgcaagaaacattagtagcctcaa 11266121  T
Q  101 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  11266122 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatattaacttttaaaggaaccgctttaagccataa 11266221  T
Q  201 aaattgatcaaactctgcagtgat 224  Q
    ||||||| ||||||||||||||||    
T  11266222 aaattgaccaaactctgcagtgat 11266245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 27891695 - 27891923
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaa 100  Q
    |||||||||||| ||||||||  ||||||||||||||||||||| |  ||||||||| ||||||||||||||||||| |||||   ||  | | ||||||    
T  27891695 aagagccataatcgaccataatgatcacattgaaaaaacaaatggtccctttcctcctccttaccacacaaggccgcgcaagacacattggaaacctgaa 27891794  T
Q  101 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataa 200  Q
    |||| ||||||||||| |||||||||||||| ||||||||||||||||||||| |||| |||||||| ||||| ||||| ||||||||||||||||||||    
T  27891795 ggacgttcctcttgcgcaggttgtcctttgttgcaagtctattcagaaagagatgccagacaaaaatattaacctttaatggaaccgctttaagccataa 27891894  T
Q  201 aaattgatcaaactctgcagtgatattga 229  Q
    |||||||| ||||||||||||||| ||||    
T  27891895 aaattgattaaactctgcagtgatgttga 27891923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 5825180 - 5824972
Alignment:
Q  15 accataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttg 114  Q
    ||||||| |||||||| |||||||||||||||  ||||||||| |||||||||| || ||  ||||| ||  ||  |||||||  |||||||||||||||    
T  5825180 accataataatcacatcgaaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaaaaaacattggtagcctcgaggacattcctcttg 5825081  T
Q  115 cgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaact 214  Q
    ||||| || |||||||||||||||| |||||||||||| | |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||    
T  5825080 cgaagattatcctttgtagcaagtcgattcagaaagagcctccaaacaaaaatattaacttttaaagggaccgctttaagccataaaaattgatcaaact 5824981  T
Q  215 ctgcagtga 223  Q
    |||||||||    
T  5824980 ctgcagtga 5824972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 6678798 - 6678577
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||| ||||||||||||||||||||||||  ||||||||| |||||||| | || ||  ||||| ||  ||  |||||||  ||||    
T  6678798 agccataaccgaccataataatcacattgaaaaaacaaatgatcactttcctcctccttaccatataaagcaccacaaaaaacattggtagcctcgagga 6678699  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||||||||||||| || |||||||||||||||| |||||||||||| | |||||||||||| ||  ||| ||| |||||||||||||||||||||||    
T  6678698 cattcctcttgcgaagattatcctttgtagcaagtcgattcagaaagagcctccaaacaaaaatatt--cttctaaaggaaccgctttaagccataaaaa 6678601  T
Q  204 ttgatcaaactctgcagtgatatt 227  Q
    ||||||||||||||||||||||||    
T  6678600 ttgatcaaactctgcagtgatatt 6678577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 29150326 - 29150504
Alignment:
Q  25 tcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttgcgaaggttgt 124  Q
    |||||||||||||| ||||| | |||||||||  |||||||||| ||||||||||||||   ||   |||||| | |||||||||| ||||| | |||||    
T  29150326 tcacattgaaaaaataaatggtctctttcctcgtccttaccacagaaggccgcacaagatacattgttagcctca-ggacattccttttgcgcaagttgt 29150424  T
Q  125 cctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaat 204  Q
    |||||||||||||||||||||| || |||| |||||||||||| ||||| ||||| |||||||| |||||||||||||||    
T  29150425 cctttgtagcaagtctattcaggaaaagacaccaaacaaaaatattaacctttaacggaaccgccttaagccataaaaat 29150504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 29322916 - 29322997
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||| | ||||||||||||||    
T  29322916 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaactgctttcaaccataaaaattgat 29322997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 31962774 - 31962686
Alignment:
Q  124 tcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaa 212  Q
    |||||||||||||||||||||||| ||||| |||||||||| |||||||| ||||| |||||| |||| ||||||||||||||| ||||    
T  31962774 tcctttgtagcaagtctattcagatagagatgccaaacaaatatgttaacctttaacggaaccacttttagccataaaaattgagcaaa 31962686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 38931892 - 38931973
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||| || |  ||||||||||| | ||||||||||||||    
T  38931892 tttgtagcaagtctattcagaaagagatgccaaacaaatatgttaaccttcagcggaaccgctttcaaccataaaaattgat 38931973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 8896369 - 8896447
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaatt 205  Q
    |||||||||||||||||||||||||||||||||||||  |||||||| || ||  |||||||||| | |||||||||||    
T  8896369 tttgtagcaagtctattcagaaagagacgccaaacaactatgttaaccttcaacagaaccgctttcaaccataaaaatt 8896447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 10462359 - 10462244
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||| |||||||||| |||||||||||||  ||||||||| |||||| ||| || ||  ||||| ||  ||  |||||||  ||||    
T  10462359 agccataaccgaccataataatcacattggaaaaacaaatgatccctttcctcctccttactacataaagcaccacaaaaaacattggtagcctcgagga 10462260  T
Q  104 cattcctcttgcgaag 119  Q
    ||||||||||||||||    
T  10462259 cattcctcttgcgaag 10462244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 38938469 - 38938684
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaa 100  Q
    ||||| |||||| |||||||| |||||||||||||||| ||||| |  ||||||||| |||||||||| |||||||||||||||| || |||||||||||    
T  38938469 aagagtcataatcgaccataataatcacattgaaaaaataaatggtccctttcctcctccttaccacataaggccgcacaagaagcatatgtagcctgaa 38938568  T
Q  101 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataa 200  Q
     |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38938569 agacattcctcttgcgaagattgtcctttgtagtaagtctattcagaaagagacgccaaacaaaaatgttaatttttaagggaaccgctttaagccataa 38938668  T
Q  201 aaattgatcaaactct 216  Q
    ||| ||||||||||||    
T  38938669 aaactgatcaaactct 38938684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 30275892 - 30276109
Alignment:
Q  7 cataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacat 106  Q
    |||||| |||||||| |||||||||| ||||||||||||| |||||||||| |||||||||| || ||  ||||||||  ||  ||||||| ||| ||||    
T  30275892 cataatcgaccataataatcacattggaaaaacaaatgatctctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacat 30275991  T
Q  107 tcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattg 206  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30275992 tcctcttgcgaagattatcctttgtagcgagtctattcagaaagagcctccaaacaaaaatattaacttttaagggaaccgctttaagccataaaaattg 30276091  T
Q  207 atcaaactctgcagtgat 224  Q
    |||||| |||||||||||    
T  30276092 atcaaaatctgcagtgat 30276109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 32349874 - 32350097
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||| |||||||| |||| ||||| |||||||||||||  ||||||||| |||||||||| || ||  ||||||||  ||  ||||||| ||| |    
T  32349874 agccataatcgaccataataatcgcattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaa 32349973  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||| | | |||||||||| |||||||||||||||| ||||||||||||||||||    
T  32349974 cattcctcttgcgaagaatatcctttgtagcaagtctattcagaaagagccacgaaacaaaaatattaacttttaagggaatcgctttaagccataaaaa 32350073  T
Q  204 ttgatcaaactctgcagtgatatt 227  Q
    ||||||||| ||||||||||||||    
T  32350074 ttgatcaaaatctgcagtgatatt 32350097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 23384854 - 23385066
Alignment:
Q  15 accataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttg 114  Q
    ||||||| |||||||||| || ||||||||||  ||||||||| | |||||||| || ||  ||||| ||  ||  |||||||  |||||||||||||||    
T  23384854 accataataatcacattggaagaacaaatgatcactttcctcctctttaccacataaagcaccacaaaaaacattggtagcctcgaggacattcctcttg 23384953  T
Q  115 cgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaact 214  Q
    ||||| || |||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  23384954 cgaagattatcctttgtagcatgtctattcagaaagagccgccaaacaaaaatattaacttttaaaggaaccgctttaagccataaaaattgatcaaact 23385053  T
Q  215 ctgcagtgatatt 227  Q
    |||||||||||||    
T  23385054 ctgcagtgatatt 23385066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 21963419 - 21963627
Alignment:
Q  15 accataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttg 114  Q
    ||||||| |||||||| |||||||||||||||   |||||||| |||||||||| || ||  ||||| ||  ||  |||||||  |||||||||||||||    
T  21963419 accataataatcacatcgaaaaaacaaatgatccttttcctcctccttaccacataaagcaccacaaaaaacattggtagcctcgaggacattcctcttg 21963518  T
Q  115 cgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaact 214  Q
    ||||| || |||||||||||||||| |||||||||||| | |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||    
T  21963519 cgaagattatcctttgtagcaagtcgattcagaaagagcctccaaacaaaaatattaacttttaaagggaccgctttaagccataaaaattgatcaaact 21963618  T
Q  215 ctgcagtga 223  Q
    |||||||||    
T  21963619 ctgcagtga 21963627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 21964639 - 21964812
Alignment:
Q  50 tttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaa 149  Q
    |||||||| |||||||||| || ||  ||||| ||  ||  |||||||  |||||||||||||||||||| || |||||||||||||||| |||||||||    
T  21964639 tttcctcctccttaccacataaagcaccacaaaaaacattggtagcctcgaggacattcctcttgcgaagattatcctttgtagcaagtcgattcagaaa 21964738  T
Q  150 gagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaactctgcagtga 223  Q
    ||| | |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  21964739 gagcctccaaacaaaaatattaacttttaaagggaccgctttaagccataaaaattgatcaaactctgcagtga 21964812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 27914823 - 27914653
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||| |||||||||| |||||||||||||  ||||||||| |||||||||| |  ||  || || ||  ||  |||||||  ||||    
T  27914823 agccataaccgaccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacatatagcaccataaaaaacattggtagcctcgagga 27914724  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaact 174  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||  || ||||||||||| ||||||    
T  27914723 cattcctcttgcgaagattatcctttgtagcaagtctattcagaaagaaccgtcaaacaaaaatattaact 27914653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 1258584 - 1258665
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||| || || ||||||||||| | ||||||||||||||    
T  1258584 tttgtagcaagtctattcagaaagagacgcaaaacaaatatgttaaccttcaacggaaccgcttttaaccataaaaattgat 1258665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 22300858 - 22300966
Alignment:
Q  99 aaggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccat 198  Q
    ||||||||| || ||||| |  || |||||||||||| ||||||||||||||||||| |  ||||| |||||||| || || |||||| |||| | ||||    
T  22300858 aaggacatttcttttgcgcaaattatcctttgtagcaggtctattcagaaagagacgtcttacaaatatgttaaccttcaacggaaccacttttaaccat 22300957  T
Q  199 aaaaattga 207  Q
    |||||||||    
T  22300958 aaaaattga 22300966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 26077948 - 26077728
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||  |||||||| | || ||||| |||||||||||||  ||||||||| |||||||||| || ||  ||||||||  ||  ||||||| ||| |    
T  26077948 agccataagcgaccataatattcgcattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaa 26077849  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  26077848 cattccttttgcgaagattgtcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggtaccgctttaagccataaaaa 26077749  T
Q  204 ttgatcaaactctgcagtgat 224  Q
    ||||||||| |||||||||||    
T  26077748 ttgatcaaaatctgcagtgat 26077728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 31423431 - 31423238
Alignment:
Q  36 aaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttgcgaaggttgtcctttgtagca 135  Q
    ||||||||| |  ||||||||| ||||||||||||||||||| ||||||  ||  ||| | | |||||| ||||||||||||||||||| |||||| |||    
T  31423431 aaacaaatggtccctttcctcctccttaccacacaaggccgcgcaagaaacattggtaccttcaaggacgttcctcttgcgaaggttgttctttgttgca 31423332  T
Q  136 agtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaactctgcagtgatattga 229  Q
    |||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  31423331 agtctattcagaaagagacgtcagacaaaaatattaacctttaagggaaccgctttaagccataaaaattgattaaactctgcagtgatgttga 31423238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 208
Target Start/End: Original strand, 29532381 - 29532561
Alignment:
Q  28 cattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttgcgaaggttgtcct 127  Q
    |||||||| ||||||||||  ||||||||| ||||| ||||||||||| |||||||  |||   ||||  ||||||||||||| ||||  |  |||||||    
T  29532381 cattgaaagaacaaatgatccctttcctcctccttatcacacaaggccacacaagatatattattagctggaaggacattccttttgcttaaattgtcct 29532480  T
Q  128 ttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||    
T  29532481 ttgtagcaagtctattcagaaagagacgccagacaaaaatgttaacatttaatggtaccgctttaagccataaaaattgat 29532561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 26390454 - 26390260
Alignment:
Q  14 gaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctctt 113  Q
    ||||||||  ||| |||||||| ||||||||    ||||| ||| |||||||||||||||||  | ||||  |||   ||||| |||||||||||||  |    
T  26390454 gaccataatgatcgcattgaaagaacaaatggcccctttcgtcctccttaccacacaaggccatataagacatattattagccggaaggacattccttat 26390355  T
Q  114 gcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    ||  |  |||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||  ||||||||||||||||||    
T  26390354 gcttaaattgtccgttgtagcaagtctattcagaaagagacgccagacaaaaatgttaacctttaatggtaccgccgtaagccataaaaattgat 26390260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 10801779 - 10801698
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||| | ||||||||||||||    
T  10801779 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaactgctttcaaccataaaaattgat 10801698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 2959812 - 2959748
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccaca 68  Q
    ||||||||  |||||||| ||||||||||||| || ||||| | ||| |||||| ||||||||||    
T  2959812 agccataaccgaccataataatcacattgaaagaataaatggtctctgtcctcctccttaccaca 2959748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 667335 - 667490
Alignment:
Q  74 ccgcacaagaagtatctgtagcctgaaggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaac 173  Q
    |||||||||||  || |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  667335 ccgcacaagaaacatttgtagcctcaagtacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaac 667434  T
Q  174 ttttaagggaaccgctttaagccataaaaattgatcaaactctgcagtgatattga 229  Q
     |||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||    
T  667435 ctttaagggaaccactttaagccataaaaattgattaaactctgcagtgatgttga 667490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 18295618 - 18295398
Alignment:
Q  4 agccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaagga 103  Q
    ||||||||| |||||||| |||| ||||| |||||||||||||  ||||||||| |||||||||| || ||  ||||||||  ||  ||| |||  || |    
T  18295618 agccataatcgaccataataatcgcattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtaacctctagaa 18295519  T
Q  104 cattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaa 203  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  18295518 cattcctcttgcgaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggtaccgctttaagccataaaaa 18295419  T
Q  204 ttgatcaaactctgcagtgat 224  Q
    ||||||||| | |||||||||    
T  18295418 ttgatcaaaatatgcagtgat 18295398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 28605112 - 28604884
Alignment:
Q  1 aagagccataattgaccataaaaatcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaa 100  Q
    |||||||||||  ||||||||  ||||||||| ||||||||||| | |||||||||| ||||||||||||||||||| |||||   ||  | | ||| ||    
T  28605112 aagagccataaccgaccataatgatcacattggaaaaacaaatggtctctttcctcctccttaccacacaaggccgcgcaagacacattggaaacctcaa 28605013  T
Q  101 ggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataa 200  Q
    | || |||||||| || |||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||||| || |||| ||||||||||||    
T  28605012 gaacgttcctcttacgcaggttgtcctttgttgcaagtctattcagaaaaagacgccatacaaaaatattaacctttaatgggaccggtttaagccataa 28604913  T
Q  201 aaattgatcaaactctgcagtgatattga 229  Q
    |||||||| ||||||||||||||||||||    
T  28604912 aaattgattaaactctgcagtgatattga 28604884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 2894261 - 2894457
Alignment:
Q  28 cattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttgcgaaggttgtcct 127  Q
    ||||| |||||||||||||   | |||||| | |||||||| || ||  ||||||||  ||  || |||| ||||| ||||||||| ||||| || ||||    
T  2894261 cattggaaaaacaaatgatccatgtcctcctcgttaccacataaagcaccacaagaaacattggttgcctcaaggatattcctcttacgaagattatcct 2894360  T
Q  128 ttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaactctgcagtgat 224  Q
    |||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  2894361 ttgtagcaagtctattcagaaaaagccgccaaacaaaaatattaacttttaagggaaccgctttaagccatagaaattgatcaaaatctgcagtgat 2894457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 7218552 - 7218368
Alignment:
Q  24 atcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttgcgaaggttg 123  Q
    ||||||||| ||||| ||||| | |||||||||| ||||||||||||||||||||||| |   ||   |||||| || ||||||||| || || |  ||     
T  7218552 atcacattggaaaaataaatggtctctttcctcctccttaccacacaaggccgcacaatatacattgttagcctcaaagacattccttttacgcaaatta 7218453  T
Q  124 tcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||    
T  7218452 tcctttgtagcaagtctattcagaaaaagacgccaaacaaaaatgttaacctttaacggaaccgccttaagccataaaaattgat 7218368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 99 - 224
Target Start/End: Original strand, 17228031 - 17228156
Alignment:
Q  99 aaggacattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccat 198  Q
    |||||||||||| ||||| |  ||||||||||||||||||||||| |||||||||||||| ||||| ||||| || ||||| ||||| |||||||||||     
T  17228031 aaggacattccttttgcgcaaattgtcctttgtagcaagtctatttagaaagagacgccagacaaatatgttcacatttaacggaactgctttaagccac 17228130  T
Q  199 aaaaattgatcaaactctgcagtgat 224  Q
    ||||| |||| ||||||| |||||||    
T  17228131 aaaaaatgatgaaactcttcagtgat 17228156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 5391616 - 5391535
Alignment:
Q  127 tttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    ||||| ||||||||||||||||| |  |||||||||||||||||||| || || ||| ||||||| | ||||||||||||||    
T  5391616 tttgttgcaagtctattcagaaataagcgccaaacaaaaatgttaaccttcaacggagccgctttcaaccataaaaattgat 5391535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 151
Target Start/End: Complemental strand, 9759701 - 9759578
Alignment:
Q  28 cattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttgcgaaggttgtcct 127  Q
    ||||||||||||| ||| |  ||||| ||| ||||||||| ||| ||||||||| |   |   || |||| || ||||||||| ||||| || || ||||    
T  9759701 cattgaaaaaacagatggtccctttcatcctccttaccacgcaaagccgcacaatacacaaaagtggcctcaaagacattccttttgcgcagattatcct 9759602  T
Q  128 ttgtagcaagtctattcagaaaga 151  Q
    ||||||||||||||||| ||||||    
T  9759601 ttgtagcaagtctattcggaaaga 9759578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 224928 - 224744
Alignment:
Q  24 atcacattgaaaaaacaaatgatatctttcctcccccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttgcgaaggttg 123  Q
    ||||||||| ||||| ||||| | |||||||||| ||||||||||||||||||||||| |   ||   |||||| |||||||||||| || || |  |||    
T  224928 atcacattggaaaaataaatggtctctttcctcctccttaccacacaaggccgcacaatatacattgttagcctcaaggacattccttttacgcaaattg 224829  T
Q  124 tcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgat 208  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||    
T  224828 tcctttgtagcaagtctattcagaaaaagacgccaaacaaaaatgttaacctttaacggaaccgccttaagccataaaaattgat 224744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 11164 - 11269
Alignment:
Q  103 acattcctcttgcgaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaa 202  Q
    ||||| ||||| || || || |||||||||| |||||||||||| |||||||  || ||||| || ||||| ||||| |||||| ||||  |||| ||||    
T  11164 acatttctcttccgcagattatcctttgtagaaagtctattcaggaagagacatcatacaaatatattaacctttaacggaacctctttgtgccacaaaa 11263  T
Q  203 attgat 208  Q
    | ||||    
T  11264 aatgat 11269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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