View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_41 (Length: 406)

Name: NF10140A_low_41
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_41
NF10140A_low_41
[»] chr6 (3 HSPs)
chr6 (13-406)||(663602-664000)
chr6 (17-245)||(908100-908328)
chr6 (199-243)||(10157995-10158039)
[»] chr7 (4 HSPs)
chr7 (287-350)||(44172881-44172944)
chr7 (280-354)||(36314611-36314685)
chr7 (304-370)||(38134414-38134480)
chr7 (196-244)||(36314628-36314676)
[»] chr2 (1 HSPs)
chr2 (193-244)||(44605137-44605188)
[»] chr5 (2 HSPs)
chr5 (293-366)||(16315862-16315935)
chr5 (293-341)||(19625928-19625976)
[»] chr3 (1 HSPs)
chr3 (287-355)||(8039206-8039274)
[»] chr4 (2 HSPs)
chr4 (293-355)||(18513238-18513300)
chr4 (314-363)||(5654609-5654658)
[»] chr8 (1 HSPs)
chr8 (304-369)||(6501481-6501546)
[»] chr1 (2 HSPs)
chr1 (287-364)||(43328458-43328535)
chr1 (193-241)||(40158408-40158456)


Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Original strand, 663602 - 664000
Alignment:
Q  13 gacatcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663602 gacatcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccat 663701  T
Q  113 aaaaactgttcgtatataaaatctttgtagcaccaacacttcttatcaaaggtgtgcaaagtgtacaatgcatgtaagtatctaacaccgacacatgtaa 212  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  663702 aaaaattgttcatatatataatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaacaccgacacatgtaa 663801  T
Q  213 tttcattgaaatatgtctttttctcaaattataaatggtgttagaatcgacacttctaatcaaaggtgtgtctaacact-----aacacaacactaacac 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||    
T  663802 tttcattgaaatatgtctttttctcaaattataaatggtgttagaatcgacacttctaatcaaaggtgtgtctaacactaacacaacacaacactaacac 663901  T
Q  308 atgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtccatattgtatcaggtgttcatacttcaaatctaatta 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663902 atgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtccatattgtatcaggtgttcatacttcaaatctaatta 664000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 908328 - 908100
Alignment:
Q  17 tcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccataaaa 116  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  908328 tcaaaaactgcattattatgcaaactccattcacaaattctcgctttctctggtatcaaaagaggcaaaatttcacataagtaaatcataaaccataaaa 908229  T
Q  117 actgttcgtatataaaatctttgtagcaccaacacttcttatcaaaggtgtgcaaagtgtacaatgcatgtaagtatctaacaccgacacatgtaatttc 216  Q
      ||||  |||||| ||||||||||||||||||||| |||||||||||||||| |||||| | || ||||||||| ||||||||||||| |||||| | |    
T  908228 tttgttgatatatataatctttgtagcaccaacactacttatcaaaggtgtgccaagtgtccgatacatgtaagtgtctaacaccgacaaatgtaagtac 908129  T
Q  217 attgaaatatgtctttttctcaaattata 245  Q
    ||||||||||| || ||||||||||||||    
T  908128 attgaaatatgactatttctcaaattata 908100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 10158039 - 10157995
Alignment:
Q  199 accgacacatgtaatttcattgaaatatgtctttttctcaaatta 243  Q
    |||||||||||| ||| ||||||| |||||| |||||||||||||    
T  10158039 accgacacatgtgattacattgaattatgtcattttctcaaatta 10157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 350
Target Start/End: Original strand, 44172881 - 44172944
Alignment:
Q  287 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatca 350  Q
    |||| |||||||||| |||||||||| |||||||||| |||| ||| |||||||||||| ||||    
T  44172881 acaccaacacaacacaaacacatgtgattacattgaattatgtcattttctcaaattattatca 44172944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 36314611 - 36314685
Alignment:
Q  280 gtgtctaacactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgt 354  Q
    ||||| ||||| || ||||||| ||||||| || ||||||||||||||| ||| |||||||||||| || |||||    
T  36314611 gtgtccaacaccaagacaacaccaacacatatgattacattgaaatatgtcattttctcaaattattatgagtgt 36314685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 370
Target Start/End: Original strand, 38134414 - 38134480
Alignment:
Q  304 acacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtcc 370  Q
    |||||| || |||||||||| |||| ||| |||||||||||| ||| ||||||||||||| ||||||    
T  38134414 acacatatgattacattgaattatgtcattttctcaaattattatcggtgtcaacatgtccatgtcc 38134480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 36314628 - 36314676
Alignment:
Q  196 aacaccgacacatgtaatttcattgaaatatgtctttttctcaaattat 244  Q
    |||||| |||||| | ||| |||||||||||||| ||||||||||||||    
T  36314628 aacaccaacacatatgattacattgaaatatgtcattttctcaaattat 36314676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 44605137 - 44605188
Alignment:
Q  193 tctaacaccgacacatgtaatttcattgaaatatgtctttttctcaaattat 244  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||||||||    
T  44605137 tctaacaccgacacatgtaattacattgaattatgttattttctcaaattat 44605188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 366
Target Start/End: Complemental strand, 16315935 - 16315862
Alignment:
Q  293 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaat 366  Q
    |||||||||  | ||||||||||||||| || |||  ||| | |||||||||| ||||||||||||||||||||    
T  16315935 acacaacacagatacatgtggttacattcaattatatcatttcctcaaattattatcagtgtcaacatgtcaat 16315862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 19625928 - 19625976
Alignment:
Q  293 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaa 341  Q
    |||||||||| ||||||||||||||||| || ||| |||| ||||||||    
T  19625928 acacaacactgacacatgtggttacattcaattattccattttctcaaa 19625976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 355
Target Start/End: Complemental strand, 8039274 - 8039206
Alignment:
Q  287 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtc 355  Q
    ||||| |||||||||  |||| | || ||||||||||  ||||||| ||||||||||||||||||||||    
T  8039274 acactgacacaacaccgacacctatgattacattgaatcatgccattttctcaaattatcatcagtgtc 8039206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 18513238 - 18513300
Alignment:
Q  293 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtc 355  Q
    |||||||||| |||||| || |||||||||| |||| ||| |||||||||||| ||| |||||    
T  18513238 acacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 5654609 - 5654658
Alignment:
Q  314 ttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtc 363  Q
    |||||||||| |||| ||| |||||||||||| ||||||||| |||||||    
T  5654609 ttacattgaattatgtcattttctcaaattattatcagtgtcgacatgtc 5654658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 6501546 - 6501481
Alignment:
Q  304 acacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtc 369  Q
    ||||||||||||||||| || |||  |||  ||||||||||| | |||||||||| ||||||||||    
T  6501546 acacatgtggttacatttaattatttcattctctcaaattattaccagtgtcaacgtgtcaatgtc 6501481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 364
Target Start/End: Complemental strand, 43328535 - 43328458
Alignment:
Q  287 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtca 364  Q
    |||| ||||| ||| | ||||||||||||||||| || |||  ||| |||||||||||| || ||||||||| |||||    
T  43328535 acaccaacacgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgtcaacgtgtca 43328458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 40158408 - 40158456
Alignment:
Q  193 tctaacaccgacacatgtaatttcattgaaatatgtctttttctcaaat 241  Q
    |||||||||||||||||| |||||||| |  |||||| |||||||||||    
T  40158408 tctaacaccgacacatgtgatttcattcatttatgtcattttctcaaat 40158456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University