View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_413 (Length: 229)
Name: NF10140A_low_413
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_413 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 38145589 - 38145362
Alignment:
| Q |
1 |
gaggtaggatatcgggcattgtccaccctgcccattggtttcccatgaaattaggccggtagtatccaagctcacgccttattgtatcaagttgtttccc |
100 |
Q |
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| T |
38145589 |
gaggtaggatatcgggcattgtccaccctgcccattggtttcccatgaaattaggccggtagtatccaagctcacgccttattgtatcaagttgtttccc |
38145490 |
T |
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| Q |
101 |
tgttgggtgtgcagcagcataaagaaatacaggtactgcattttcacatataacagaaatacagttttaagtgtctaaaattggattaaattctcctgca |
200 |
Q |
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| T |
38145489 |
cgttgggtgtgcagcagcataaagaaatacaggtactgcattttcacatataacagaaataca-atttaagtgtataaaattggattaaattctcttgca |
38145391 |
T |
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| Q |
201 |
ttttgtcaattatgtctactattctatga |
229 |
Q |
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| T |
38145390 |
ttttgtcaattatgtctacgattctatga |
38145362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 38135551 - 38135402
Alignment:
| Q |
1 |
gaggtaggatatcgggcattgtccaccctgcccattggtttcccatgaaattaggccggtagtatccaagctcacgccttattgtatcaagttgtttccc |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||| || ||||||||||| |
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| T |
38135551 |
gaggtaggatatcgggcatagtccaccctgcccattggtttcccatgaaattaggccggtaatacccgagctctcgccttattgtgtcgagttgtttccc |
38135452 |
T |
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| Q |
101 |
tgttgggtgtgcagcagcataaagaaatacaggtactgcattttcacata |
150 |
Q |
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| T |
38135451 |
tgttgggtgtgcagcagcataaagaaatacaggtactgcattttcacata |
38135402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 38144209 - 38144157
Alignment:
| Q |
177 |
aaaattggattaaattctcctgcattttgtcaattatgtctactattctatga |
229 |
Q |
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| T |
38144209 |
aaaattggattaaattctcttgcattttgtcaattatgtctacgattctatga |
38144157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 38144450 - 38144398
Alignment:
| Q |
177 |
aaaattggattaaattctcctgcattttgtcaattatgtctactattctatga |
229 |
Q |
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| T |
38144450 |
aaaattggattaaattctcttgcattttgtcaattatgtctacgattctatga |
38144398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 38144691 - 38144639
Alignment:
| Q |
177 |
aaaattggattaaattctcctgcattttgtcaattatgtctactattctatga |
229 |
Q |
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| T |
38144691 |
aaaattggattaaattctcttgcattttgtcaattatgtctacgattctatga |
38144639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 38144932 - 38144880
Alignment:
| Q |
177 |
aaaattggattaaattctcctgcattttgtcaattatgtctactattctatga |
229 |
Q |
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| T |
38144932 |
aaaattggattaaattctcttgcattttgtcaattatgtctacgattctatga |
38144880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 38145173 - 38145121
Alignment:
| Q |
177 |
aaaattggattaaattctcctgcattttgtcaattatgtctactattctatga |
229 |
Q |
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| T |
38145173 |
aaaattggattaaattctcttgcattttgtcaattatgtctacgattctatga |
38145121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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