View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_414 (Length: 229)
Name: NF10140A_low_414
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_414 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10922339 - 10922112
Alignment:
| Q |
1 |
tattgctgcagctgattttgtatatatactcgtaccttgtgaatgataagcattggtgatggtacattatacaggtagtatacatagaaaaccgactata |
100 |
Q |
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| T |
10922339 |
tattgctgcaactgattttgtatatatactcgtaccttgtgaatgataagcgttggtgatggtaaattatacaggtagtatacatagaaaatcgactata |
10922240 |
T |
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| Q |
101 |
gttgttaaaccaattgaatctgtggttagacttgattttcacaa-----caataaatacgatatgtatcttcaaattttgcctccaataggcggtgaggt |
195 |
Q |
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| T |
10922239 |
gttgttaaaccaattgaatctgtggttcgacttgattttcacaacactgcaataaatacgatatgtatctacaaattttgcctccaataggcggtgaggt |
10922140 |
T |
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| Q |
196 |
tgaattttgataacatgaaataagcact |
223 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
10922139 |
tgaagtttgataacatgaaataagcact |
10922112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 45407205 - 45407119
Alignment:
| Q |
1 |
tattgctgcagctgattttgtatatatactcgtaccttgtgaatgataagcattggtgatggtacattatacaggtagtatacatagaaa |
90 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||| | | | |||||||||||||| |||||||||||||||| |
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| T |
45407205 |
tattgctgcaactgattttgtatataa--tcgtaccttgtgaatgataggtgct-atactggtacattatacatgtagtatacatagaaa |
45407119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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