View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_416 (Length: 228)
Name: NF10140A_low_416
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_416 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 29408425 - 29408622
Alignment:
| Q |
14 |
atggacatcaggctatagagtgaggactggaataaactttgtagattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaat |
113 |
Q |
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| T |
29408425 |
atggacattaggctatagagtgaggactggaataaactttgtagattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaat |
29408524 |
T |
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| Q |
114 |
ttcctacaaaagaaaaaagttagctatggtgatttgcgctaagatggtcaacttcatcaatgatgtgtggcttaaatatgattgcaatgagcaatatt |
211 |
Q |
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| T |
29408525 |
ttcctacaaaagaaaaaagttagctatggtgatttgcgctaagatggtcaacttcattaatgatgtgtggcttaaatatgattgcaatgagcaatatt |
29408622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 29456183 - 29456102
Alignment:
| Q |
41 |
tggaataaactttgtagattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaatttcctacaa |
122 |
Q |
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| T |
29456183 |
tggaatatactttgtagattacaataatggcatcaaaagatatccaaaaatgtctgcaatctggtttaagaattttctacaa |
29456102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 29425705 - 29425821
Alignment:
| Q |
41 |
tggaataaactttgtagattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaatttcctacaaaagaaaaaagttagctat |
140 |
Q |
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| T |
29425705 |
tggaatatacttcatagattacaatgatggcctcaaaagatatccaaaaatgtcagctgtatggttcaagaattttctacaacataaaatagttgcatat |
29425804 |
T |
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| Q |
141 |
ggtgatttgcgctaaga |
157 |
Q |
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| T |
29425805 |
ggtgattcacgctaaga |
29425821 |
T |
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