View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_421 (Length: 227)

Name: NF10140A_low_421
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_421
NF10140A_low_421
[»] chr4 (11 HSPs)
chr4 (11-211)||(20675453-20675653)
chr4 (19-211)||(23872993-23873185)
chr4 (11-211)||(55299043-55299243)
chr4 (11-209)||(2631831-2632029)
chr4 (11-137)||(7662817-7662944)
chr4 (11-79)||(3129498-3129566)
chr4 (20-83)||(13158304-13158367)
chr4 (13-87)||(19114991-19115065)
chr4 (40-109)||(53810374-53810443)
chr4 (43-87)||(10562874-10562918)
chr4 (43-95)||(42778785-42778837)
[»] chr2 (12 HSPs)
chr2 (11-211)||(26894121-26894321)
chr2 (11-211)||(26899560-26899760)
chr2 (19-199)||(13550567-13550740)
chr2 (19-199)||(13551020-13551193)
chr2 (11-137)||(45422025-45422151)
chr2 (29-103)||(28400077-28400151)
chr2 (13-92)||(15018227-15018306)
chr2 (26-111)||(43310790-43310875)
chr2 (43-95)||(1380629-1380681)
chr2 (28-120)||(9668532-9668624)
chr2 (23-87)||(11028425-11028489)
chr2 (40-92)||(35488387-35488439)
[»] chr6 (13 HSPs)
chr6 (9-211)||(23346974-23347176)
chr6 (11-211)||(15674260-15674460)
chr6 (19-196)||(26205794-26205964)
chr6 (19-196)||(25318300-25318470)
chr6 (23-95)||(17078711-17078783)
chr6 (25-95)||(23065569-23065639)
chr6 (55-95)||(11060415-11060455)
chr6 (13-120)||(19256162-19256269)
chr6 (13-120)||(33640440-33640546)
chr6 (40-95)||(33805327-33805382)
chr6 (25-95)||(13086086-13086156)
chr6 (55-95)||(18051002-18051042)
chr6 (11-111)||(32186214-32186314)
[»] chr3 (7 HSPs)
chr3 (9-211)||(6175985-6176187)
chr3 (11-211)||(29309839-29310039)
chr3 (11-137)||(30166853-30166979)
chr3 (149-211)||(14903980-14904042)
chr3 (40-103)||(36709449-36709512)
chr3 (25-95)||(21740046-21740116)
chr3 (29-103)||(45684715-45684789)
[»] chr7 (10 HSPs)
chr7 (11-211)||(13440484-13440684)
chr7 (11-166)||(15653216-15653369)
chr7 (14-95)||(46626369-46626450)
chr7 (40-103)||(18671709-18671772)
chr7 (28-103)||(18767947-18768022)
chr7 (28-103)||(34457684-34457759)
chr7 (13-120)||(45993098-45993204)
chr7 (73-167)||(12378299-12378393)
chr7 (40-89)||(41340086-41340135)
chr7 (55-111)||(36227703-36227759)
[»] chr1 (10 HSPs)
chr1 (11-211)||(48072940-48073140)
chr1 (11-211)||(32352819-32353006)
chr1 (11-211)||(37530997-37531188)
chr1 (27-120)||(28097491-28097583)
chr1 (23-87)||(10710718-10710782)
chr1 (28-120)||(39430799-39430891)
chr1 (13-87)||(25504505-25504579)
chr1 (34-155)||(29139934-29140055)
chr1 (22-78)||(7396242-7396298)
chr1 (43-87)||(30110466-30110510)
[»] chr5 (7 HSPs)
chr5 (11-211)||(34481378-34481579)
chr5 (11-133)||(10486429-10486551)
chr5 (9-79)||(588070-588140)
chr5 (28-101)||(38358008-38358081)
chr5 (23-95)||(20208241-20208312)
chr5 (28-83)||(35122232-35122287)
chr5 (13-79)||(31864797-31864863)
[»] scaffold0029 (1 HSPs)
scaffold0029 (11-133)||(134363-134485)
[»] scaffold0002 (2 HSPs)
scaffold0002 (11-133)||(312190-312312)
scaffold0002 (11-133)||(327644-327766)
[»] chr8 (5 HSPs)
chr8 (11-137)||(7452857-7452983)
chr8 (23-120)||(36157676-36157772)
chr8 (28-103)||(44082538-44082613)
chr8 (25-111)||(6901440-6901526)
chr8 (43-95)||(17659378-17659430)
[»] scaffold0418 (1 HSPs)
scaffold0418 (11-137)||(8110-8235)
[»] scaffold0131 (1 HSPs)
scaffold0131 (11-79)||(4065-4133)
[»] scaffold0179 (2 HSPs)
scaffold0179 (23-95)||(8079-8151)
scaffold0179 (23-95)||(13013-13085)
[»] scaffold0308 (1 HSPs)
scaffold0308 (40-95)||(17692-17747)
[»] scaffold0912 (1 HSPs)
scaffold0912 (43-95)||(2414-2466)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 20675653 - 20675453
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||    
T  20675653 tggtggacagaggtggtttgtggtatagggttttagtcgccaggtatggcgaaataggtggcaggttggaggttgggggccgaagagtttcttgctggtg 20675554  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20675553 gtcggaggtgaggcgacttagggatagggtaggcgatggtggtagcgggtggtttgaggatcaggtgttgaggagagttggtgatggggttgacacttcg 20675454  T
Q  211 t 211  Q
    |    
T  20675453 t 20675453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 23872993 - 23873185
Alignment:
Q  19 agaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggagg 118  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||    
T  23872993 agaggtggtttgtggtatcgggttttagtcgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcttgctggtggtcggagg 23873092  T
Q  119 tgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcgt 211  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||    
T  23873093 tgaggcgtcttagggatggggtaggcgatggtggtagcgggtggtttgaggatcaggtgttgaggagagttggtgatggggtcgatacttcgt 23873185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 55299243 - 55299043
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  55299243 tggtggatagaggtggtttgtggtatcgggttttagtcgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcttgctggtg 55299144  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||  ||||||    
T  55299143 gtcggaggtgaggcgtcttagggatggggtaggcgatggtggtagcgggtggtttggggatcaggtgttgaggagagttggtgatggggttgttacttcg 55299044  T
Q  211 t 211  Q
    |    
T  55299043 t 55299043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 2632029 - 2631831
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    |||||||||  |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| || |||| ||||||||||| |||||    
T  2632029 tggtggacaagggtggtttgtggtatagggttttagttgccaggtatggcgaattaggtggcaggttggaggttaggggccgaagagtttcttgctggtg 2631930  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttc 209  Q
    |||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  2631929 gtcggaggtgaggcgatttagggacagggtaggtgatggtggtagcgggtggtttgaggatcaggtgatgaggagagttggtgatggggttgacacttc 2631831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 7662817 - 7662944
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggtt-gggagccggagagtttcttgttggt 109  Q
    |||||||||||||||||||||||||||| || ||||| || || |||||||||||||||||||| ||||||||| ||| ||||||| ||||| |||||||    
T  7662817 tggtggacagaggtggtttgtggtatagtgtcttagttgctaggtatggcgaattaggtggcagattggaggttcgggggccggagtgtttcgtgttggt 7662916  T
Q  110 ggtcggaggtgaggcgacttagggatag 137  Q
    ||  ||||||||| ||  ||||||||||    
T  7662917 ggggggaggtgagtcgtattagggatag 7662944  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 3129498 - 3129566
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttgg 79  Q
    ||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||    
T  3129498 tggtggatagaggtggtttgtggtatagggttttagttgtcaggtatggcgaattaggtggcaggttgg 3129566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 13158304 - 13158367
Alignment:
Q  20 gaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggt 83  Q
    |||| ||||| |||||||||||||||||| || | |||||||||  |||||| |||||||||||    
T  13158304 gaggaggtttttggtatagggttttagtcacccgttatggcgaagcaggtgggaggttggaggt 13158367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 19115065 - 19114991
Alignment:
Q  13 gtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttggg 87  Q
    ||||| || ||||| || |||||||| |||||||||||  | ||||||||| || |||| |||||||||||||||    
T  19115065 gtggataggggtggattttggtatagagttttagtcgctcgttatggcgaagtatgtgggaggttggaggttggg 19114991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 53810443 - 53810374
Alignment:
Q  40 gttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggt 109  Q
    |||||||||| | | ||||||||| ||||||| ||||||||||| ||| ||||||| | ||||| |||||    
T  53810443 gttttagtcgtctgttatggcgaagtaggtgggaggttggaggtggggggccggagtgattcttcttggt 53810374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 10562874 - 10562918
Alignment:
Q  43 ttagtcgccagatatggcgaattaggtggcaggttggaggttggg 87  Q
    ||||||||| | ||||||||| ||||||| |||||||||||||||    
T  10562874 ttagtcgcccgttatggcgaagtaggtgggaggttggaggttggg 10562918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 42778837 - 42778785
Alignment:
Q  43 ttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||||| | ||||||||| |||| || ||||||||||||||| |||||||    
T  42778837 ttagtcgcccgttatggcgaagtaggcgggaggttggaggttgggggccggag 42778785  T

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Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 26894121 - 26894321
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||    
T  26894121 tggtggacataggtggtttgtggtatagggttttagtcgccaggtatggcgaaataggtggcaggttggaggttgggggccggagtgtttcttgctggtg 26894220  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26894221 gtcggaggtgaggcgacttagggatagggtaggcgatggtggtagcgggtggtttgaggatcaggtgttgaggagagttggtgatggggttgacacttcg 26894320  T
Q  211 t 211  Q
    |    
T  26894321 t 26894321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 26899560 - 26899760
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||    
T  26899560 tggtggacataggtggtttgtggtatagggttttagtcgccaggtatggcgaaataggtggcaggttggaggttgggggccggagtgtttcttgctggtg 26899659  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26899660 gtcggaggtgaggcgacttagggatagggtaggcgatggtggtagcgggtggtttgaggatcaggtgttgaggagagttggtgatggggttgacacttcg 26899759  T
Q  211 t 211  Q
    |    
T  26899760 t 26899760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 13550740 - 13550567
Alignment:
Q  19 agaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggagg 118  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||    
T  13550740 agaggtgatttgtggtatagggttttagttgccagatatggcgaattaggtggcaggttggggg-------ccggagagtttcttgttggtggtcggagg 13550648  T
Q  119 tgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatgggg 199  Q
    |||| || ||||||| |||||| || | |||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  13550647 tgagtcgtcttaggggtagggttggtgttggtggtagcggctggtttgaggatcaggtgttgaggagagttggtgatgggg 13550567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 13551193 - 13551020
Alignment:
Q  19 agaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggagg 118  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||    
T  13551193 agaggtgatttgtggtatagggttttagttgccagatatggcgaattaggtggcaggttggggg-------ccggagagtttcttgttggtggtcggagg 13551101  T
Q  119 tgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatgggg 199  Q
    |||| || ||||||| |||||| || | |||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  13551100 tgagtcgtcttaggggtagggttggtgttggtggtagcggctggtttgaggatcaggtgttgaggagagttggtgatgggg 13551020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 45422151 - 45422025
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||||| |||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||| | ||||| || || ||||||||    
T  45422151 tggtggacaaaggtggtttgtggtatagtgtcttagttgccaggtatggcgaattaggtggcaggttggaggttgggggtcggagtgtgtcgtgttggtg 45422052  T
Q  111 gtcggaggtgaggcgacttagggatag 137  Q
    |  ||||||||| ||  ||||||||||    
T  45422051 gagggaggtgagtcgtattagggatag 45422025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 28400077 - 28400151
Alignment:
Q  29 tgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttctt 103  Q
    ||||||||  ||||||||||||  | ||||||||| ||||||| ||||||||||| ||| ||||||| |||||||    
T  28400077 tgtggtatcaggttttagtcgctcgttatggcgaagtaggtgggaggttggaggtggggggccggagtgtttctt 28400151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 15018306 - 15018227
Alignment:
Q  13 gtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccg 92  Q
    ||||| || ||||| || |||||||| |||||||||||  | ||||||||| || |||| ||||||||||||||| ||||    
T  15018306 gtggataggggtggattttggtatagagttttagtcgctcgttatggcgaagtatgtgggaggttggaggttgggggccg 15018227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 43310875 - 43310790
Alignment:
Q  26 gtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtgg 111  Q
    |||||||||||||||| || || || |||||||||||    | ||| ||||||||||||||| ||||||| | ||||| |||||||    
T  43310875 gtttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtgg 43310790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 1380681 - 1380629
Alignment:
Q  43 ttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||||| | ||||||||| |||| || ||||||||||||||| |||||||    
T  1380681 ttagtcgcccgttatggcgaagtaggcgggaggttggaggttgggggccggag 1380629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 9668532 - 9668624
Alignment:
Q  28 ttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggaggtg 120  Q
    ||||||||||| ||| |||||||| | ||||||||  | || || ||||||||||||||| |||||||   ||||| |||||||  |||||||    
T  9668532 ttgtggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccggagttgttcttattggtggagggaggtg 9668624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 11028489 - 11028425
Alignment:
Q  23 gtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttggg 87  Q
    |||||||||||||  | |||||||||||| | || |||||| ||||||| |||||||||| ||||    
T  11028489 gtggtttgtggtaccgagttttagtcgcccgttacggcgaagtaggtggaaggttggaggatggg 11028425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 35488439 - 35488387
Alignment:
Q  40 gttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccg 92  Q
    |||||||||||| | ||||||||| ||||||| ||||||||||| ||| ||||    
T  35488439 gttttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggccg 35488387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 23346974 - 23347176
Alignment:
Q  9 gctggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttgg 108  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||    
T  23346974 gctggtggatagaggtggtttgtggtatagggttttagtcgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcttgctgg 23347073  T
Q  109 tggtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacactt 208  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |    
T  23347074 tggtcggaggtgaggcgacttagggatagggtaggcgatggtggtagcgggaggtttgaggatcaggtgttgaggagagttggtgatggggttgacacct 23347173  T
Q  209 cgt 211  Q
    |||    
T  23347174 cgt 23347176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 15674460 - 15674260
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||||    
T  15674460 tggtggaccgagatggtttgtggtatagggttttagtcgccagatatggtgaattaggtggcaggttggaggttgggggccggagagtttctagctggtg 15674361  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    |||||||||||||||||||||||||| | |||| || |||||| |||||||||||||||||  |||||||||||||||||||||||||||||| ||||||    
T  15674360 gtcggaggtgaggcgacttagggatatgttaggcgacggtggtggcgggtggtttgaggatcgggtgttgaggagagttggtgatggggttgagacttcg 15674261  T
Q  211 t 211  Q
    |    
T  15674260 t 15674260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 26205964 - 26205794
Alignment:
Q  19 agaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggagg 118  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     ||||  ||||||||||||||||||||||||||||    
T  26205964 agaggtggtttgtggtatacggttttagtcgccagatatggcgaattaggtggcaggttgg-----ggga--cggagagtttcttgttggtggtcggagg 26205872  T
Q  119 tgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatg 196  Q
    |||| || ||||||| |||||| || | |||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  26205871 tgagtcgtcttaggggtagggttggtgttggtggtagcggttggtttaaggatcaggtgttgaggagagttggtgatg 26205794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 25318470 - 25318300
Alignment:
Q  19 agaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggagg 118  Q
    ||||| ||||||||||||| |||||| |||||||||||||||||||||||| ||||| |||     ||||  ||||||||||||||||||||||||||||    
T  25318470 agagggggtttgtggtatacggtttttgtcgccagatatggcgaattaggtcgcagggtgg-----ggga--cggagagtttcttgttggtggtcggagg 25318378  T
Q  119 tgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatg 196  Q
    |||| || ||||||  |||||| || | |||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  25318377 tgagtcgtcttaggtgtagggttggtgttggtggtagcggttggtttaaggatcaggtgttgaggagagttggtgatg 25318300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 17078711 - 17078783
Alignment:
Q  23 gtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||| |||||| | || ||||||||| | ||||||||| ||||||| ||||||||||||||| |||||||    
T  17078711 gtggtttttggtatcgagtcttagtcgcccgttatggcgaagtaggtgggaggttggaggttgggggccggag 17078783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 23065569 - 23065639
Alignment:
Q  25 ggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||||||||   |||||||||||| | ||||||||| ||||||| ||||||||||| ||| |||||||    
T  23065569 ggtttgtggtatcatgttttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggccggag 23065639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 11060415 - 11060455
Alignment:
Q  55 tatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  11060415 tatggcgaattaggtgggaggttggaggttgggggccggag 11060455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 19256269 - 19256162
Alignment:
Q  13 gtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggt 112  Q
    ||||| || |||||||| |||||||| |||||||||||| | ||||||||  |  |||| ||||||||||||||| ||| |||   ||||| |||||||     
T  19256269 gtggataggggtggtttttggtatagagttttagtcgcccgttatggcgaggtgtgtgggaggttggaggttgggggccagagttgttcttcttggtggc 19256170  T
Q  113 cggaggtg 120  Q
     |||||||    
T  19256169 gggaggtg 19256162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 33640546 - 33640440
Alignment:
Q  13 gtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggt 112  Q
    ||||| || |||||||| |||||||| |||||||||||| | ||||||||  |  |||| ||||||||||||||| |||||||   ||||| |||||||     
T  33640546 gtggataggggtggtttttggtatagagttttagtcgcccgttatggcgaggtgtgtgggaggttggaggttggg-gccggagttgttcttcttggtggc 33640448  T
Q  113 cggaggtg 120  Q
     |||||||    
T  33640447 gggaggtg 33640440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 33805382 - 33805327
Alignment:
Q  40 gttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    |||||||||||| | ||||||||| ||||||| ||||||||||| ||| |||||||    
T  33805382 gttttagtcgcccgctatggcgaaataggtgggaggttggaggtggggggccggag 33805327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 13086156 - 13086086
Alignment:
Q  25 ggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    |||||||||||||| ||| |||||||| | ||||||||  | || || ||||||||||||||| |||||||    
T  13086156 ggtttgtggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccggag 13086086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 18051002 - 18051042
Alignment:
Q  55 tatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||||| ||||||| ||||||||||||||| |||||||    
T  18051002 tatggcgaagtaggtgggaggttggaggttgggggccggag 18051042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 32186314 - 32186214
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| |||||||| || ||||||||||| || || || |||||| | ||  | | ||| ||||||||||||||| ||||||| | ||||| ||||||    
T  32186314 tggtggatagaggtgggttttggtatagggtgttggtggcgagatatagtgaggtggctgggaggttggaggttgggggccggagtgcttcttcttggtg 32186215  T
Q  111 g 111  Q
    |    
T  32186214 g 32186214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 6175985 - 6176187
Alignment:
Q  9 gctggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttgg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||    
T  6175985 gctggtggacagaggtggtttgtggtatagggttttagtcgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcttgctgg 6176084  T
Q  109 tggtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacactt 208  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||||||||    
T  6176085 tggtcggaggtgaggcgacttagggatagggtaggcgatggtggtagcgggtggtttgaggatcaggtgttgatgagaatgggtgatggggttgacactt 6176184  T
Q  209 cgt 211  Q
    |||    
T  6176185 cgt 6176187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 29310039 - 29309839
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  29310039 tggtggacaaaggtggtttgtggtatagggttttagtcgccaggtatgccgaattaggtggcaggttggaggttgggggccggagagtttcttgctggtg 29309940  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    |||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  29309939 gtcggaggtgaggcgaattagggacagggtaggtgatggtggtagcgggtggtttgagaatcaggtgttgaggagagttggtgatggggttgacacttcg 29309840  T
Q  211 t 211  Q
    |    
T  29309839 t 29309839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 30166853 - 30166979
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    |||| ||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||| |||| ||  | || ||||||||    
T  30166853 tggttgacagaggtggtttgtggtatagtgtcttagttgccaggtatggcgaattaggtggcaggttggaggttgggggccgaagtatatcgtgttggtg 30166952  T
Q  111 gtcggaggtgaggcgacttagggatag 137  Q
    |  ||||||||| ||  ||||||||||    
T  30166953 gagggaggtgagtcgtattagggatag 30166979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 14903980 - 14904042
Alignment:
Q  149 gtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcgt 211  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  14903980 gtggtagcgggtggtatgaggatcaggtgttgaggagagttggtgatggggttgacacttcgt 14904042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 36709512 - 36709449
Alignment:
Q  40 gttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttctt 103  Q
    |||||||||||| | ||||||||| ||||||| ||||||||||| ||| ||||||| |||||||    
T  36709512 gttttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggccggagtgtttctt 36709449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 21740046 - 21740116
Alignment:
Q  25 ggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||| |||||| | ||| |||||||| | ||||||||| ||||||| ||||||||||||||| |||||||    
T  21740046 ggtttatggtattgtgttctagtcgcccgttatggcgaagtaggtgggaggttggaggttgggggccggag 21740116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 45684789 - 45684715
Alignment:
Q  29 tgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttctt 103  Q
    ||||||||  ||||||||||||  | ||||||||| ||||||| ||||||||||| ||| ||||||| |||||||    
T  45684789 tgtggtatcaggttttagtcgctcgttatggcgaagtaggtgggaggttggaggtggggggccggagtgtttctt 45684715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 13440684 - 13440484
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  13440684 tggtggatagaggtggtttgtggtatcgggttttagtcgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcttgctggtg 13440585  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||  ||||||    
T  13440584 gtcggaggtgaggcgtcttagggatggggtaggcgatggtggtagcgggtggtttggggatcaggtgttgaggagagttggtgatggggttgttacttcg 13440485  T
Q  211 t 211  Q
    |    
T  13440484 t 13440484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 15653216 - 15653369
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||||||||||||||||  ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| || || ||||||||    
T  15653216 tggtggacagaggtggtttg--gtatagggtcttagttgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtgtcgtgttggtg 15653313  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttg 166  Q
    |  ||||||||| || ||||||||||| || || || |||| | | ||||||||||    
T  15653314 gagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttg 15653369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 46626450 - 46626369
Alignment:
Q  14 tggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||    
T  46626450 tggacagaggtggtttgtggtatagtgtcttagttgccaggtatggcgaattaggtggcaggttggaggttgggggccggag 46626369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 18671772 - 18671709
Alignment:
Q  40 gttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttctt 103  Q
    |||||||||||  | ||||||||| ||||||| ||||||||||| ||| ||||||| |||||||    
T  18671772 gttttagtcgctcgttatggcgaagtaggtgggaggttggaggtggggggccggagtgtttctt 18671709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 18768022 - 18767947
Alignment:
Q  28 ttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttctt 103  Q
    |||||||||  |||||||||| || | |||||| || ||||||| ||||||||||| ||| ||||||| |||||||    
T  18768022 ttgtggtatcaggttttagtctcccgttatggcaaagtaggtgggaggttggaggtggggggccggagtgtttctt 18767947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 34457684 - 34457759
Alignment:
Q  28 ttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttctt 103  Q
    |||||||||  |||||||||| || | |||||| || ||||||| ||||||||||| ||| ||||||| |||||||    
T  34457684 ttgtggtatcaggttttagtcacccgttatggcaaagtaggtgggaggttggaggtggggggccggagtgtttctt 34457759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 45993204 - 45993098
Alignment:
Q  13 gtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggt 112  Q
    ||||| || |||||||| |||||||| |||||||||||| | ||||||||  |  |||| ||||||||||||||| |||||||   ||||| |||||||     
T  45993204 gtggataggggtggtttttggtatagagttttagtcgcccgttatggcgaggtgtgtgggaggttggaggttggg-gccggagttgttcttcttggtggc 45993106  T
Q  113 cggaggtg 120  Q
     |||||||    
T  45993105 gggaggtg 45993098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 12378299 - 12378393
Alignment:
Q  73 aggttggaggttgggagccggagagtttcttgttggtggtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttga 167  Q
    ||||||||||||||  ||| ||| || ||||||||||||  |||||||||  |  ||||||| |||| ||| ||||||||||| || ||||||||    
T  12378299 aggttggaggttggtggccagagtgtatcttgttggtggagggaggtgagttgtattagggaaaggggaggtgatggtggtagtggatggtttga 12378393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 41340135 - 41340086
Alignment:
Q  40 gttttagtcgccagatatggcgaattaggtggcaggttggaggttgggag 89  Q
    |||||||||||| ||||||||||  ||||||| |||||||||||| ||||    
T  41340135 gttttagtcgcccgatatggcgaggtaggtgggaggttggaggtttggag 41340086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 36227703 - 36227759
Alignment:
Q  55 tatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtgg 111  Q
    ||||||||| ||||||| ||||||||||| ||| ||||||| | ||||| |||||||    
T  36227703 tatggcgaagtaggtgggaggttggaggtggggggccggagtgattcttcttggtgg 36227759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 48072940 - 48073140
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  48072940 tggtggatagaggtggtttgtggtatcgggttttagtcgacaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcttgctggtg 48073039  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||  ||||||    
T  48073040 gtcggaggtgaggcgtcttagggatggggtaggcgatggtggtagcgggtggtttggggatcaggtgttgaggagagttggtgatgcggttgttacttcg 48073139  T
Q  211 t 211  Q
    |    
T  48073140 t 48073140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 32352819 - 32353006
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||| || |||||    
T  32352819 tggtggatagaggtggtttgtggtatagggttttagtcgctaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcatgctggtg 32352918  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    ||||||||||||||| |||||||||             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32352919 gtcggaggtgaggcgtcttagggat-------------gtggtagcgggtggtttgaggatcaggtgttgaggagagttggtgatggggttgacacttcg 32353005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 37531188 - 37530997
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttc-ttgttggt 109  Q
    |||| ||||||||||| |||||||||||||||||||| | ||| |||||||| |||||||||||||||| ||       |||||||||||| ||||||||    
T  37531188 tggtagacagaggtgggttgtggtatagggttttagttgtcaggtatggcgagttaggtggcaggttggggg-------ccggagagtttcattgttggt 37531096  T
Q  110 ggtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttc 209  Q
    ||||||||||||| || |||||||  ||||  ||||||||||||||||| |||||||||||| |||   |||||||||||| |||||||| ||| |||||    
T  37531095 ggtcggaggtgagtcgtcttagggtgagggatggagatggtggtagcggctggtttgaggatcagg---tgaggagagttgatgatggggctgatacttc 37530999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 28097491 - 28097583
Alignment:
Q  27 tttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggaggtg 120  Q
    |||||||||| | |||||||||||| | ||||||||| ||||||| ||||||||||||||| |||||||   ||||| |||||||  |||||||    
T  28097491 tttgtggtatcgagttttagtcgcccgttatggcgaagtaggtgggaggttggaggttggg-gccggagttattcttcttggtggagggaggtg 28097583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 10710718 - 10710782
Alignment:
Q  23 gtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttggg 87  Q
    ||||||| |||||| | || ||||||||| | ||||||||| ||||||| |||||||||||||||    
T  10710718 gtggtttttggtatcgagtcttagtcgcccgttatggcgaagtaggtgggaggttggaggttggg 10710782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 39430891 - 39430799
Alignment:
Q  28 ttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggaggtg 120  Q
    ||||||||||| ||| |||||||| | ||||||||  | ||||| ||||||||||||||| |||||||   ||||| |||||||  |||||||    
T  39430891 ttgtggtatagtgttctagtcgcccgttatggcgaggttggtgggaggttggaggttgggggccggagttgttcttattggtggagggaggtg 39430799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 25504505 - 25504579
Alignment:
Q  13 gtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttggg 87  Q
    ||||| || |||||||| |||||||| |||||||||||| | ||||||||  |  |||| |||||||||||||||    
T  25504505 gtggataggggtggtttttggtatagagttttagtcgcccgttatggcgaggtgtgtgggaggttggaggttggg 25504579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 29140055 - 29139934
Alignment:
Q  34 tatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggaggtgaggcgacttaggg 133  Q
    |||||||| ||||| |  || |||| ||||||||||||||  ||||||| |||| ||||||| |||||  ||||||||  |||| |||| ||  ||||||    
T  29140055 tatagggtattagttgttaggtatgacgaattaggtggcaaattggaggatgggggccggagtgtttcaagttggtggcgggagttgagtcggattaggg 29139956  T
Q  134 atagggtaggagatggtggtag 155  Q
    | ||||  || |||||||||||    
T  29139955 aaaggggcggtgatggtggtag 29139934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 7396242 - 7396298
Alignment:
Q  22 ggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttg 78  Q
    |||||||| || ||||| |||||||||||| | ||||||||| ||||||| ||||||    
T  7396242 ggtggtttttgatatagagttttagtcgcccgctatggcgaagtaggtgggaggttg 7396298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 30110466 - 30110510
Alignment:
Q  43 ttagtcgccagatatggcgaattaggtggcaggttggaggttggg 87  Q
    ||||||||| | ||||||||| ||||||| |||||||||||||||    
T  30110466 ttagtcgcccgttatggcgaagtaggtgggaggttggaggttggg 30110510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 34481579 - 34481378
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    |||| ||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  34481579 tggtagacagaggtgggttgtggtatagggttttagccgccaggtatggcgagttaggtggcaggttggaggttgggggccggagagtttcttgttggtg 34481480  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtgg-tttgaggattaggtgttgaggagagttggtgatggggttgacacttc 209  Q
    || ||||||||| || |||||||  ||||  |||| |||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||| |||||    
T  34481479 gttggaggtgagtcgtcttagggtgagggatggagttggtggtagcggctggttttgaggatcaggtgttgaggagagttggtgatggggctgatacttc 34481380  T
Q  210 gt 211  Q
    ||    
T  34481379 gt 34481378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 10486429 - 10486551
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||||| || |||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  10486429 tggtggacatagatggtttgtggtatacggttttagttgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcgtgttggtg 10486528  T
Q  111 gtcggaggtgaggcgacttaggg 133  Q
    |  ||||||||| || |||||||    
T  10486529 gagggaggtgagtcgtcttaggg 10486551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 588140 - 588070
Alignment:
Q  9 gctggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttgg 79  Q
    |||||| || ||| ||||||| ||||||||||| ||||| ||||||||||||||||||| ||| |||||||    
T  588140 gctggttgatagatgtggtttatggtatagggtgttagttgccagatatggcgaattagatgggaggttgg 588070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 38358081 - 38358008
Alignment:
Q  28 ttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttc 101  Q
    |||||||||  | ||||||||||| | ||||||||| ||||||| ||||||||||| ||| ||||||| |||||    
T  38358081 ttgtggtatcagattttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggccggagtgtttc 38358008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 20208241 - 20208312
Alignment:
Q  23 gtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||| |||||| | || ||||||||| | ||||||||| ||||||| ||||||||||||||| |||||||    
T  20208241 gtggtttttggtatcgagtcttagtcgcccg-tatggcgaagtaggtgggaggttggaggttgggggccggag 20208312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 35122232 - 35122287
Alignment:
Q  28 ttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggt 83  Q
    |||||||||  ||||||||||||| | ||||||||| ||||||| |||||||||||    
T  35122232 ttgtggtatcaggttttagtcgcccgttatggcgaaataggtggaaggttggaggt 35122287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 31864863 - 31864797
Alignment:
Q  13 gtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttgg 79  Q
    ||||| ||||| || || ||||||||||||||| || |||| ||||||||| ||||||| |||||||    
T  31864863 gtggatagaggaggcttatggtatagggttttaatcaccagctatggcgaaataggtgggaggttgg 31864797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 134363 - 134485
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  134363 tggtggatagagatggtttgtggtatagggttttagttgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcatgttggtg 134462  T
Q  111 gtcggaggtgaggcgacttaggg 133  Q
    |  ||||||||| || |||||||    
T  134463 gagggaggtgagtcgtcttaggg 134485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 312190 - 312312
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  312190 tggtggatagagatggtttgtggtatagggttttagttgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcatgttggtg 312289  T
Q  111 gtcggaggtgaggcgacttaggg 133  Q
    |  ||||||||| || |||||||    
T  312290 gagggaggtgagtcgtcttaggg 312312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 327644 - 327766
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  327644 tggtggatagagatggtttgtggtatagggttttagttgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcatgttggtg 327743  T
Q  111 gtcggaggtgaggcgacttaggg 133  Q
    |  ||||||||| || |||||||    
T  327744 gagggaggtgagtcgtcttaggg 327766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 7452983 - 7452857
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||||||||||||||||||||||||| | |||||  |||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  7452983 tggtggacagaggtggtttgtggtataggatcttagtttccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcgtgttggtg 7452884  T
Q  111 gtcggaggtgaggcgacttagggatag 137  Q
    |  ||||||||| || |||||||||||    
T  7452883 gagggaggtgagtcgtcttagggatag 7452857  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 36157772 - 36157676
Alignment:
Q  23 gtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggaggtg 120  Q
    |||||||||||||| | |||||||||||| | ||||||||| ||||||| ||||||||||||||| |||||||   ||||| |||||||  |||||||    
T  36157772 gtggtttgtggtattgagttttagtcgcccg-tatggcgaagtaggtgggaggttggaggttgggggccggagttgttcttcttggtggagggaggtg 36157676  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 44082538 - 44082613
Alignment:
Q  28 ttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttctt 103  Q
    |||||||||  ||||||||||||| | ||||||||| ||||||| ||||||||||| ||| | ||||| |||||||    
T  44082538 ttgtggtatcaggttttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggtcggagtgtttctt 44082613  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 6901526 - 6901440
Alignment:
Q  25 ggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtgg 111  Q
    ||||||||||||   |||||||||||| | ||||||||  ||||||| ||||||||||||||| |||| || | ||||| |||||||    
T  6901526 ggtttgtggtatcatgttttagtcgcccgttatggcgaggtaggtgggaggttggaggttgggggccgaagtggttcttcttggtgg 6901440  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 17659430 - 17659378
Alignment:
Q  43 ttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||||| | ||||||||| ||||||| ||||||||||||||| |||||||    
T  17659430 ttagtcgcccgttatggcgaagtaggtgggaggttggaggttgggggccggag 17659378  T

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Target: scaffold0418 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 8235 - 8110
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    |||||||||||||||||||||||||||| || ||||| || || |||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||||    
T  8235 tggtggacagaggtggtttgtggtatagtgtcttagttgctaggtatggcgaattaggtggcagattggaggttgggggccggagtgtttcgtgttggtg 8136  T
Q  111 gtcggaggtgaggcgacttagggatag 137  Q
    |  ||||||||| ||  ||||||||||    
T  8135 g-gggaggtgagtcgtattagggatag 8110  T

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Target: scaffold0131 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 4065 - 4133
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttgg 79  Q
    ||||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  4065 tggtggatagagatggtttgtggtatagggttttagttgccaggtatggcgaattaggtggcaggttgg 4133  T

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Target: scaffold0179 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 8151 - 8079
Alignment:
Q  23 gtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||| |||||| | || ||||||||| | |||| |||| ||||||| ||||||||||||||| |||||||    
T  8151 gtggtttttggtatcgagtcttagtcgcccgttatgacgaagtaggtgggaggttggaggttgggggccggag 8079  T

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Target: scaffold0179; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 13085 - 13013
Alignment:
Q  23 gtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||| |||||| | || ||||||||| | |||| |||| ||||||| ||||||||||||||| |||||||    
T  13085 gtggtttttggtatcgagtcttagtcgcccgttatgacgaagtaggtgggaggttggaggttgggggccggag 13013  T

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Target: scaffold0308 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 17747 - 17692
Alignment:
Q  40 gttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    |||||||||||| | ||||||||| ||||||| ||||||||||| |||||| ||||    
T  17747 gttttagtcgcccgttatggcgaaataggtgggaggttggaggtggggagctggag 17692  T

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Target: scaffold0912 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 2414 - 2466
Alignment:
Q  43 ttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||||| | ||||||||| | ||||| ||||||||||||||| |||||||    
T  2414 ttagtcgcccgttatggcgaagtgggtgggaggttggaggttgggggccggag 2466  T

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