View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_427 (Length: 226)
Name: NF10140A_low_427
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_427 |
 | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 2813203 - 2813412
Alignment:
| Q |
1 |
acttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2813203 |
acttcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccg |
2813302 |
T |
|
| Q |
101 |
acttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggcttt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
2813303 |
acttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcttt |
2813402 |
T |
|
| Q |
201 |
acttcttgat |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
2813403 |
acttcttgat |
2813412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 29309845 - 29309636
Alignment:
| Q |
1 |
acttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29309845 |
acttcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccg |
29309746 |
T |
|
| Q |
101 |
acttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggcttt |
200 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| || |
|
|
| T |
29309745 |
acttgctctctgtcgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcgtt |
29309646 |
T |
|
| Q |
201 |
acttcttgat |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
29309645 |
acttcttgat |
29309636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 6176181 - 6176390
Alignment:
| Q |
1 |
acttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
6176181 |
acttcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttagacggttgtttgagttaatagagaataagtctatgtccgtcgccg |
6176280 |
T |
|
| Q |
101 |
acttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggcttt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
6176281 |
acttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatagcagtgggaggaggagttgctagatgagtgtagggcttt |
6176380 |
T |
|
| Q |
201 |
acttcttgat |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
6176381 |
acttcttgat |
6176390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 14904036 - 14904130
Alignment:
| Q |
1 |
acttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgt |
95 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14904036 |
acttcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagtttacagagaataagtctatgtccgt |
14904130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 23602082 - 23602001
Alignment:
| Q |
129 |
gggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
23602082 |
ggggaaggtgtggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgat |
23602001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 49731696 - 49731844
Alignment:
| Q |
62 |
tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatg |
161 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| |||||| ||||||||||| |||| | | |||||| |||||||||||||||||| || || |
|
|
| T |
49731696 |
tgtttgagttaacagagaataagttcatgtatgtggcagacttgttctctgttgatccggagcagcggggggttatgtggaggtggagacgtagtttgtg |
49731795 |
T |
|
| Q |
162 |
gcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
|||| |||||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
49731796 |
gcagtgggaggaggagttgttggcggagtgtagggctttacttcttgat |
49731844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 25872955 - 25873020
Alignment:
| Q |
145 |
tggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||| | | |||||||||||||||| ||||| |
|
|
| T |
25872955 |
tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttgat |
25873020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 9379434 - 9379360
Alignment:
| Q |
101 |
acttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggagg |
175 |
Q |
| |
|
||||| ||| ||||||||| || | ||||||||| |||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
9379434 |
acttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggagg |
9379360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 43909917 - 43909947
Alignment:
| Q |
41 |
tttgtgtgaggtttaggcggttgtttgagtt |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
43909917 |
tttgtgtgaggtttaggcggttgtttgagtt |
43909947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 210
Target Start/End: Original strand, 30167107 - 30167256
Alignment:
| Q |
61 |
ttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttat |
160 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| |||||| ||||||||||| ||| | | ||| | ||||||||||| ||||| || | |
|
|
| T |
30167107 |
ttgtttgagttaacagagaataagctcatgtttgtggcagacttgttctctgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgt |
30167206 |
T |
|
| Q |
161 |
ggcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
||||| ||||||||||| || || | ||||||| |||||||||||||| |
|
|
| T |
30167207 |
ggcagtgggaggaggagatgttagcggagtgtaggactttacttcttgat |
30167256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 23347173 - 23347379
Alignment:
| Q |
4 |
tcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgact |
103 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23347173 |
tcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgccgact |
23347272 |
T |
|
| Q |
104 |
tgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggctttact |
203 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
23347273 |
tgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttact |
23347372 |
T |
|
| Q |
204 |
tcttgat |
210 |
Q |
| |
|
||||||| |
|
|
| T |
23347373 |
tcttgat |
23347379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 15674266 - 15674053
Alignment:
| Q |
1 |
acttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
15674266 |
acttcgttttggtctgataggtggataggggaggctcctctttgcgtgcggtttaggcggttgtttgagttaacggagaataagtctatgtctgtggccg |
15674167 |
T |
|
| Q |
101 |
acttgctctctgttgattcggaacggtgg----ggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtaggg |
196 |
Q |
| |
|
|||| |||||||||||||| || || ||| ||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| ||| ||| |||| |
|
|
| T |
15674166 |
acttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggttgtggcagtgggaggaggagttgctagatgagtgcaggg |
15674067 |
T |
|
| Q |
197 |
ctttacttcttgat |
210 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15674066 |
ctttacttcttgat |
15674053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 25318288 - 25318082
Alignment:
| Q |
4 |
tcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgact |
103 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
25318288 |
tcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaaagaataagtttatgtccgtggcggact |
25318189 |
T |
|
| Q |
104 |
tgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggctttact |
203 |
Q |
| |
|
|||| ||||||||||| | ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||| | | ||||||||||||||| |
|
|
| T |
25318188 |
tgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggaggagttgctagaggagtgtagggctttact |
25318089 |
T |
|
| Q |
204 |
tcttgat |
210 |
Q |
| |
|
||||||| |
|
|
| T |
25318088 |
tcttgat |
25318082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 26205782 - 26205576
Alignment:
| Q |
4 |
tcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgact |
103 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
26205782 |
tcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaaagaataagtttatgtccgtggcggact |
26205683 |
T |
|
| Q |
104 |
tgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggctttact |
203 |
Q |
| |
|
|||| ||||||||||| | ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||| | | ||||||||||||||| |
|
|
| T |
26205682 |
tgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggaggagttgctagaggagtgtagggctttact |
26205583 |
T |
|
| Q |
204 |
tcttgat |
210 |
Q |
| |
|
||||||| |
|
|
| T |
26205582 |
tcttgat |
26205576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 2631835 - 2631626
Alignment:
| Q |
1 |
acttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccg |
100 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2631835 |
acttcattttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccg |
2631736 |
T |
|
| Q |
101 |
acttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggcttt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
2631735 |
acttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcttt |
2631636 |
T |
|
| Q |
201 |
acttcttgat |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
2631635 |
acttcttgat |
2631626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 23873179 - 23873388
Alignment:
| Q |
1 |
acttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccg |
100 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23873179 |
acttcgttttggtctgataggtggattggggaggctcctctgtgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccg |
23873278 |
T |
|
| Q |
101 |
acttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggcttt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
23873279 |
acttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatggcagtgggaggaggagttgctagatgagtgtagggcttt |
23873378 |
T |
|
| Q |
201 |
acttcttgat |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
23873379 |
acttcttgat |
23873388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 20675459 - 20675250
Alignment:
| Q |
1 |
acttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccg |
100 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20675459 |
acttcgttttggtctgataggtggttaggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatatccgtggccg |
20675360 |
T |
|
| Q |
101 |
acttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggcttt |
200 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| |||| |
|
|
| T |
20675359 |
acttgctctttgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgcttgatgagtgtaggacttt |
20675260 |
T |
|
| Q |
201 |
acttcttgat |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
20675259 |
acttcttgat |
20675250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 8486700 - 8486893
Alignment:
| Q |
17 |
ataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
8486700 |
ataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttga |
8486799 |
T |
|
| Q |
117 |
ttcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||| |
|
|
| T |
8486800 |
ttcggaccggtggggggaggtgtggaggtggagacgtaggttatggcagtgggagaaggagttgctagattagtgtagggctttacttcttgat |
8486893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 55299034 - 55298848
Alignment:
| Q |
24 |
gataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggaa |
123 |
Q |
| |
|
|||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
55299034 |
gataggtgaggctcctctttgtatgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggag |
55298935 |
T |
|
| Q |
124 |
cggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
55298934 |
cggtggggggaggtgtggaggtggagacgtagtttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgat |
55298848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 8654837 - 8654985
Alignment:
| Q |
62 |
tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatg |
161 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |||||| | |||||||||||||| | |||||||| ||||||||||||||||||||| || |
|
|
| T |
8654837 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg |
8654936 |
T |
|
| Q |
162 |
gcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
|||| |||||||||| ||| || | |||||||||||||||||||||| |
|
|
| T |
8654937 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
8654985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 47541301 - 47541153
Alignment:
| Q |
62 |
tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatg |
161 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| |||||| | |||||||||||||| | | ||| | |||||||||||||||| | || || |
|
|
| T |
47541301 |
tgtttgagttaacagagaataagttcatgtctgtggcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcgtttgtg |
47541202 |
T |
|
| Q |
162 |
gcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
|||| || |||||||| || || | |||||||||||||||||||||| |
|
|
| T |
47541201 |
gcagtggaaggaggagatgttagcggagtgtagggctttacttcttgat |
47541153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 174
Target Start/End: Original strand, 3129746 - 3129858
Alignment:
| Q |
62 |
tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatg |
161 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| |||||| ||||| |||||||||| | | |||| ||||||||||||||||| | || || |
|
|
| T |
3129746 |
tgtttgagttaacagagaataagttcatgtctgtggcagacttgttctctattgattcggagcagctaggggttacgtggaggtggagacgttgtttgtg |
3129845 |
T |
|
| Q |
162 |
gcagcgggaggag |
174 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
3129846 |
gcagtgggaggag |
3129858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 32353000 - 32353209
Alignment:
| Q |
1 |
acttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccg |
100 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32353000 |
acttcgttttggtctgatatgtggataggggaggctcctctttgtgtgcgatttaggcggttgtttgagttaacagagaataagtctatgtccgtggccg |
32353099 |
T |
|
| Q |
101 |
acttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggcttt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||| ||| |||||||||||| |
|
|
| T |
32353100 |
acttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtggaaggaggagttgctagatgagtgtagggcttt |
32353199 |
T |
|
| Q |
201 |
acttcttgat |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
32353200 |
acttcttgat |
32353209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 48073134 - 48073343
Alignment:
| Q |
1 |
acttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48073134 |
acttcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccg |
48073233 |
T |
|
| Q |
101 |
acttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggcttt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||| |||| ||||||| |
|
|
| T |
48073234 |
acttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgggagtgggaggaggagttgctagatgagtgtggggcttt |
48073333 |
T |
|
| Q |
201 |
acttcttgat |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
48073334 |
acttcttgat |
48073343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 37531003 - 37530794
Alignment:
| Q |
1 |
acttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccg |
100 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||| | |
|
|
| T |
37531003 |
acttcgttttggtctgataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagactatgtatgtggcag |
37530904 |
T |
|
| Q |
101 |
acttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggcttt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| ||||||||| ||||||| | | |||||||||||| |
|
|
| T |
37530903 |
acttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggcttt |
37530804 |
T |
|
| Q |
201 |
acttcttgat |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
37530803 |
acttcttgat |
37530794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 21528586 - 21528427
Alignment:
| Q |
17 |
ataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttga |
116 |
Q |
| |
|
|||||||| ||||||| | |||| ||||||| | ||| | || |||||||||||||||||||||||| ||||| || | |||||| |||||||||| |
|
|
| T |
21528586 |
ataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaacagagaataagttcatgtctgttggagacttgttctctgttga |
21528487 |
T |
|
| Q |
117 |
ttcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggagga |
176 |
Q |
| |
|
|||||| | ||||||| ||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
21528486 |
ttcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtgggaggagga |
21528427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 48265558 - 48265630
Alignment:
| Q |
138 |
gtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||| || | |||||||||||||||||||||| |
|
|
| T |
48265558 |
gtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttgat |
48265630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 36306160 - 36306012
Alignment:
| Q |
62 |
tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatg |
161 |
Q |
| |
|
||||||||||||| ||||||||| |||| ||||| |||||| |||||||||||| ||| | | ||||| | ||||||||||| ||||| || || |
|
|
| T |
36306160 |
tgtttgagttaacggagaataagctcatgtatgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtg |
36306061 |
T |
|
| Q |
162 |
gcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
|||| || |||||||| || || | | |||||||||||||||||||||| |
|
|
| T |
36306060 |
gcagtggaaggaggagatgttagaggagtgtagggctttacttcttgat |
36306012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 13440490 - 13440281
Alignment:
| Q |
1 |
acttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13440490 |
acttcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccg |
13440391 |
T |
|
| Q |
101 |
acttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggcttt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||| || ||||||||||||||||| ||| |||| ||||||| |
|
|
| T |
13440390 |
acttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatggtagtgggaggaggagttgctagatgagtgttgggcttt |
13440291 |
T |
|
| Q |
201 |
acttcttgat |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
13440290 |
acttcttgat |
13440281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 45943151 - 45943079
Alignment:
| Q |
138 |
gtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||||||||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
45943151 |
gtggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgat |
45943079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 15653469 - 15653617
Alignment:
| Q |
62 |
tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatg |
161 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||| |||||| |||||||||||| ||| | | ||||| ||||||||||| ||||| || || |
|
|
| T |
15653469 |
tgtttgagttaacggagaataagctcatgtctatggcagacttgttctctgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtg |
15653568 |
T |
|
| Q |
162 |
gcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
|||| ||||||||||| || || | |||||||||||||||||||||| |
|
|
| T |
15653569 |
gcagtgggaggaggagatgttagcggagtgtagggctttacttcttgat |
15653617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 46624069 - 46624013
Alignment:
| Q |
62 |
tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgatt |
118 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||| |||||| |||||||||||| |
|
|
| T |
46624069 |
tgtttgagttaacggagaataagctcatgtctgtggcagacttgttctctgttgatt |
46624013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 16420719 - 16420918
Alignment:
| Q |
7 |
ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc |
106 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16420719 |
ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc |
16420818 |
T |
|
| Q |
107 |
tctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggctttacttct |
206 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
16420819 |
tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagcgtagggctttacttct |
16420918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 7452728 - 7452580
Alignment:
| Q |
62 |
tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatg |
161 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||||| |||||| |||||||||||| ||| | | ||||| | ||||||||||| ||||| || || |
|
|
| T |
7452728 |
tgtttgagttaacggagaataagcttatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtg |
7452629 |
T |
|
| Q |
162 |
gcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
|||| ||||||||| ||| || | | |||||||||||||||||||||| |
|
|
| T |
7452628 |
gcagtgggaggaggtgttattagaggagtgtagggctttacttcttgat |
7452580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 26894315 - 26894522
Alignment:
| Q |
1 |
acttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
26894315 |
acttcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccg |
26894414 |
T |
|
| Q |
101 |
acttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggcttt |
200 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
26894415 |
acttgctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcttt |
26894514 |
T |
|
| Q |
201 |
acttcttg |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
26894515 |
acttcttg |
26894522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 26899754 - 26899961
Alignment:
| Q |
1 |
acttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
26899754 |
acttcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccg |
26899853 |
T |
|
| Q |
101 |
acttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggcttt |
200 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
26899854 |
acttgctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcttt |
26899953 |
T |
|
| Q |
201 |
acttcttg |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
26899954 |
acttcttg |
26899961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 43627931 - 43627727
Alignment:
| Q |
6 |
gttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttg |
105 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43627931 |
gtttaggtctgataggtggataggggagtctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgttcgtggccgacttg |
43627832 |
T |
|
| Q |
106 |
ctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggctttacttc |
205 |
Q |
| |
|
|||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
43627831 |
ctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc |
43627732 |
T |
|
| Q |
206 |
ttgat |
210 |
Q |
| |
|
||||| |
|
|
| T |
43627731 |
ttgat |
43627727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 13550545 - 13550352
Alignment:
| Q |
17 |
ataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||| |||||||| |
|
|
| T |
13550545 |
ataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgctttctgttga |
13550446 |
T |
|
| Q |
117 |
ttcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
|||||| | ||||||||| | |||||||||||||||||||||||||||| |||| ||||| |||||| | | ||| ||||||||| |||||||| |
|
|
| T |
13550445 |
ttcggagcagtggggggatgtgtggaggtggagacgtaggttatggcagtgggatgaggacttgctagaggagtgcagggctttaattcttgat |
13550352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 13550998 - 13550880
Alignment:
| Q |
17 |
ataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||| |||||||| |
|
|
| T |
13550998 |
ataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgctttctgttga |
13550899 |
T |
|
| Q |
117 |
ttcggaacggtggggggag |
135 |
Q |
| |
|
|||||| | |||||||||| |
|
|
| T |
13550898 |
ttcggagcagtggggggag |
13550880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 33548197 - 33548100
Alignment:
| Q |
113 |
ttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
33548197 |
ttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgat |
33548100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 22052911 - 22052855
Alignment:
| Q |
154 |
aggttatggcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
22052911 |
aggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgat |
22052855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 31085452 - 31085549
Alignment:
| Q |
113 |
ttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
||||||| || | ||||||||| | ||||||||||||| | ||||| || ||| ||||||||||| || || | |||||||||||||||||||||| |
|
|
| T |
31085452 |
ttgattcagagcagtggggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttgat |
31085549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 45421897 - 45421841
Alignment:
| Q |
61 |
ttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgat |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| |||||| ||||||||||| |
|
|
| T |
45421897 |
ttgtttgagttaacagagaataagctcatgtatgtggcagacttgttctctgttgat |
45421841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 34481384 - 34481175
Alignment:
| Q |
1 |
acttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccg |
100 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34481384 |
acttcgttttggtccgataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatgtctgtggcat |
34481285 |
T |
|
| Q |
101 |
acttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatggcagcgggaggaggagttgctatatgggtgtagggcttt |
200 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| ||||||||| ||||||| | | |||||||||||| |
|
|
| T |
34481284 |
atttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggcttt |
34481185 |
T |
|
| Q |
201 |
acttcttgat |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
34481184 |
acttcttgat |
34481175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 10486684 - 10486832
Alignment:
| Q |
62 |
tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatg |
161 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| ||||| |||||| |||||||||||||||| | | |||||| ||||||||||||||||||||| || |
|
|
| T |
10486684 |
tgtttgagttaacatagaataagttcatgtctgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtg |
10486783 |
T |
|
| Q |
162 |
gcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
|||| |||||||||| || || | |||||||||||||||||||||| |
|
|
| T |
10486784 |
gcagtgggaggaggacatgttagcggagtgtagggctttacttcttgat |
10486832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 134618 - 134766
Alignment:
| Q |
62 |
tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatg |
161 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |||||| | ||| |||||||||| | |||||||| ||||||||||||||||||||| || |
|
|
| T |
134618 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg |
134717 |
T |
|
| Q |
162 |
gcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
|||| |||||||||| ||| || | |||||||||||||||||||||| |
|
|
| T |
134718 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
134766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 312445 - 312593
Alignment:
| Q |
62 |
tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatg |
161 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |||||| | ||| |||||||||| | |||||||| ||||||||||||||||||||| || |
|
|
| T |
312445 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg |
312544 |
T |
|
| Q |
162 |
gcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
|||| |||||||||| ||| || | |||||||||||||||||||||| |
|
|
| T |
312545 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
312593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 327899 - 328047
Alignment:
| Q |
62 |
tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatg |
161 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |||||| | ||| |||||||||| | |||||||| ||||||||||||||||||||| || |
|
|
| T |
327899 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg |
327998 |
T |
|
| Q |
162 |
gcagcgggaggaggagttgctatatgggtgtagggctttacttcttgat |
210 |
Q |
| |
|
|||| |||||||||| ||| || | |||||||||||||||||||||| |
|
|
| T |
327999 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
328047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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