View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_429 (Length: 226)
Name: NF10140A_low_429
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_429 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 9538985 - 9539211
Alignment:
| Q |
1 |
agttaagctttcgaggacatcacatgcatcagcttatagttgcagattcttctcacacaaatctttcagtgatatatcaatgttgttggaacattgttca |
100 |
Q |
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| T |
9538985 |
agttaagctttcgaggacatcacatgcatcagtttatagttgcagattcttctcacacaaatttttcaatgatatatcaattttgttggaacattgttga |
9539084 |
T |
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| Q |
101 |
attatttaaattatgaactaagttcaaatatgattttttaaatatacta-nnnnnnnnaactcatgcataagattagaaactcacatttagatttccttg |
199 |
Q |
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| T |
9539085 |
attatttaaattatgaactaagttcaaatatgattttttaaatatactatttttttttaactcatgcataagattagaaactcacatttagatttccttg |
9539184 |
T |
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| Q |
200 |
tgttannnnnnncatttcaagtgtcat |
226 |
Q |
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||||| ||||||||||||||| |
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| T |
9539185 |
tgttatttttttcatttcaagtgtcat |
9539211 |
T |
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