View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_435 (Length: 225)
Name: NF10140A_low_435
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_435 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 64 - 209
Target Start/End: Original strand, 41429394 - 41429539
Alignment:
| Q |
64 |
aaaactggttcgtaattaatttggcaaatccaacctgatctataatatagtgacccgtcagtgatcacccaaatgcattgagttgttacaaattgacagt |
163 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41429394 |
aaaactggttcgtaattaattgggcaaatccaacctgatctataatatagtgacccgtcagtgatcacccaaatgcattgagttgttacaaattgacagt |
41429493 |
T |
|
| Q |
164 |
tttaatgatagaatgtttgagttttcctgtaaagacgagttatatt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41429494 |
tttaatgatagaatgtttgagttttcctgtaaagacgagttatatt |
41429539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 41429309 - 41429369
Alignment:
| Q |
20 |
gaaaattcatatgtcaaaaaatcaaaagaacgaaaataagatggaaaactggttcgtaatt |
80 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41429309 |
gaaaattcatatgtcaaaaaatcaaaagaacgaaaataagatggaaaactggttcgtaatt |
41429369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University