View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_436 (Length: 225)
Name: NF10140A_low_436
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_436 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 36529761 - 36529979
Alignment:
| Q |
1 |
aaaaaattaatctcatagtaatcataaaagagtttttgagggaaaattaaaacatgaataaaatagtnnnnnnnnttggtcggaaaatttagtttgagtg |
100 |
Q |
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| T |
36529761 |
aaaaaattaatctcatagtaatcataaaagagtttttgagggaaaattaaaacatgaataaaatagtaaaaaaa-ttggtcggaaaatttagtttgagtg |
36529859 |
T |
|
| Q |
101 |
aaaatttgggaggaaatgaaaagttgcgaaattttttcgtttcccgctttgtacttccctcctcttctaagtcgctggtgttttaaacactttacacttt |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36529860 |
aaaatttgggaggaaatgaaaagttgcgaaaatttttcgtttcccgctttgtacttccctcctcttctaagtcactggtgttttaaacactttacacttt |
36529959 |
T |
|
| Q |
201 |
cactgtctttctgtcttctt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
36529960 |
cactgtctttctgtcttctt |
36529979 |
T |
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