View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_439 (Length: 224)
Name: NF10140A_low_439
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_439 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 24301261 - 24301053
Alignment:
| Q |
16 |
atgttggaagtgttggagtggactctgatcaatgttgaagaaaagtttcctcgttgagttgaaaaaagctcatcaatagctctaaacagatgctcatccg |
115 |
Q |
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| T |
24301261 |
atgttggaagtgttggagtggactctgatcaatgttgaagaaaagtttctccgttaagcgtatgaaagctcataaatggctccaaacaggtgcgcatcat |
24301162 |
T |
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| Q |
116 |
aacccacactgcgggcttcgaagcccaaatgaaaattggtacaagaatgagcataaagttaaagatattttactaggttgtagggttggaaataaaatat |
215 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24301161 |
aacccacactgcgggcttcaaagcccaagtgaaaattggtacaagaatgagcataaagttaaagatattttactaggttgtatggttggaaataaaatat |
24301062 |
T |
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| Q |
216 |
gatatgtct |
224 |
Q |
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||||||||| |
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| T |
24301061 |
gatatgtct |
24301053 |
T |
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