View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_44 (Length: 401)

Name: NF10140A_low_44
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_44
NF10140A_low_44
[»] chr6 (26 HSPs)
chr6 (7-177)||(15576518-15576688)
chr6 (179-367)||(25991852-25992040)
chr6 (176-367)||(5994698-5994890)
chr6 (177-356)||(23925335-23925514)
chr6 (176-356)||(33298084-33298263)
chr6 (177-314)||(25550295-25550432)
chr6 (177-319)||(13825703-13825845)
chr6 (177-314)||(5004061-5004198)
chr6 (177-314)||(30824457-30824594)
chr6 (177-314)||(25506469-25506606)
chr6 (177-308)||(35091610-35091741)
chr6 (177-314)||(11279837-11279974)
chr6 (176-306)||(15391547-15391677)
chr6 (39-173)||(15574462-15574599)
chr6 (175-281)||(13490191-13490297)
chr6 (177-229)||(5489132-5489184)
chr6 (7-111)||(16526916-16527021)
chr6 (9-80)||(12972811-12972883)
chr6 (176-238)||(11053701-11053764)
chr6 (283-367)||(5489040-5489124)
chr6 (236-304)||(26526640-26526708)
chr6 (177-238)||(30114444-30114505)
chr6 (119-173)||(17860886-17860940)
chr6 (247-300)||(15140726-15140779)
chr6 (247-300)||(23985047-23985100)
chr6 (247-300)||(28127457-28127510)
[»] chr4 (17 HSPs)
chr4 (176-367)||(12996475-12996666)
chr4 (175-367)||(52295602-52295795)
chr4 (177-367)||(27343566-27343756)
chr4 (176-314)||(8094210-8094348)
chr4 (177-314)||(8103016-8103153)
chr4 (177-314)||(4523608-4523745)
chr4 (177-356)||(21532190-21532369)
chr4 (177-302)||(12428418-12428543)
chr4 (177-250)||(10638328-10638400)
chr4 (176-271)||(33188765-33188859)
chr4 (275-367)||(10638404-10638496)
chr4 (177-302)||(3424331-3424454)
chr4 (39-105)||(15787861-15787927)
chr4 (232-281)||(12402907-12402956)
chr4 (228-300)||(19772241-19772313)
chr4 (247-300)||(19647352-19647405)
chr4 (296-356)||(10814333-10814393)
[»] scaffold0156 (1 HSPs)
scaffold0156 (177-365)||(35233-35421)
[»] scaffold0016 (1 HSPs)
scaffold0016 (176-367)||(23463-23655)
[»] chr7 (19 HSPs)
chr7 (176-367)||(10439936-10440127)
chr7 (177-308)||(18304326-18304457)
chr7 (177-314)||(12978455-12978592)
chr7 (176-314)||(4952325-4952463)
chr7 (176-314)||(13831499-13831637)
chr7 (176-314)||(13839530-13839668)
chr7 (7-173)||(21471316-21471486)
chr7 (177-273)||(30244775-30244871)
chr7 (176-238)||(4941581-4941643)
chr7 (176-302)||(21662962-21663089)
chr7 (177-281)||(30245568-30245672)
chr7 (185-281)||(30255420-30255516)
chr7 (21-173)||(5721920-5722077)
chr7 (14-92)||(7955796-7955875)
chr7 (248-303)||(1955691-1955746)
chr7 (39-88)||(1074076-1074125)
chr7 (247-300)||(20114066-20114119)
chr7 (247-300)||(38247996-38248049)
chr7 (41-93)||(16166702-16166754)
[»] chr3 (32 HSPs)
chr3 (177-367)||(50824352-50824546)
chr3 (177-367)||(50851314-50851508)
chr3 (176-367)||(14538479-14538671)
chr3 (176-367)||(27341209-27341401)
chr3 (177-367)||(2211239-2211429)
chr3 (176-314)||(8154572-8154710)
chr3 (176-314)||(41006555-41006693)
chr3 (176-314)||(41015335-41015473)
chr3 (176-319)||(9525357-9525500)
chr3 (177-319)||(9555031-9555173)
chr3 (177-356)||(28470103-28470282)
chr3 (176-302)||(17933654-17933780)
chr3 (179-303)||(43470492-43470615)
chr3 (176-302)||(17919198-17919324)
chr3 (177-241)||(17628265-17628329)
chr3 (176-302)||(16816145-16816269)
chr3 (177-303)||(21186747-21186872)
chr3 (10-173)||(11520659-11520826)
chr3 (181-279)||(18349560-18349658)
chr3 (176-279)||(8197659-8197762)
chr3 (177-273)||(30445-30541)
chr3 (177-271)||(18039011-18039105)
chr3 (247-300)||(13272670-13272723)
chr3 (14-92)||(5632921-5633000)
chr3 (296-367)||(13509299-13509370)
chr3 (247-300)||(4505979-4506032)
chr3 (262-303)||(16288692-16288733)
chr3 (247-300)||(17657630-17657683)
chr3 (247-300)||(27976552-27976605)
chr3 (246-302)||(1477758-1477814)
chr3 (176-204)||(6958978-6959006)
chr3 (256-300)||(17618130-17618174)
[»] scaffold0497 (1 HSPs)
scaffold0497 (177-367)||(10993-11182)
[»] chr8 (20 HSPs)
chr8 (177-319)||(17973565-17973707)
chr8 (176-314)||(39837490-39837628)
chr8 (177-314)||(25579740-25579877)
chr8 (177-314)||(30938282-30938419)
chr8 (176-355)||(26873490-26873670)
chr8 (177-355)||(26875940-26876119)
chr8 (177-306)||(39845541-39845670)
chr8 (176-314)||(17664568-17664706)
chr8 (177-314)||(1407001-1407138)
chr8 (177-309)||(4839715-4839847)
chr8 (177-314)||(17683724-17683861)
chr8 (11-173)||(16052707-16052873)
chr8 (8-102)||(22894959-22895054)
chr8 (176-279)||(4582203-4582306)
chr8 (176-238)||(6670710-6670772)
chr8 (11-112)||(28901768-28901869)
chr8 (177-234)||(6663042-6663099)
chr8 (177-234)||(6743444-6743501)
chr8 (247-303)||(23090611-23090667)
chr8 (247-303)||(25700273-25700329)
[»] scaffold0002 (1 HSPs)
scaffold0002 (177-314)||(121228-121365)
[»] chr5 (34 HSPs)
chr5 (176-367)||(20372788-20372979)
chr5 (177-356)||(29186164-29186343)
chr5 (177-367)||(20398510-20398700)
chr5 (176-350)||(23349968-23350142)
chr5 (176-314)||(24956774-24956912)
chr5 (176-314)||(24965237-24965375)
chr5 (177-314)||(43597974-43598111)
chr5 (177-314)||(43603466-43603603)
chr5 (177-314)||(43608958-43609095)
chr5 (174-314)||(1728087-1728227)
chr5 (177-365)||(31410890-31411078)
chr5 (176-314)||(28852549-28852687)
chr5 (177-314)||(28843940-28844077)
chr5 (177-304)||(31421789-31421916)
chr5 (177-288)||(19223555-19223666)
chr5 (7-92)||(24841367-24841453)
chr5 (7-173)||(17027056-17027225)
chr5 (11-165)||(22754483-22754641)
chr5 (11-102)||(11274779-11274871)
chr5 (180-273)||(41099745-41099838)
chr5 (19-105)||(19331160-19331247)
chr5 (256-302)||(23028007-23028053)
chr5 (255-301)||(23037923-23037969)
chr5 (177-226)||(21929236-21929285)
chr5 (247-300)||(21988620-21988673)
chr5 (247-300)||(21997264-21997317)
chr5 (247-300)||(23606368-23606421)
chr5 (247-300)||(23635076-23635129)
chr5 (247-300)||(23829022-23829075)
chr5 (247-300)||(23837763-23837816)
chr5 (247-300)||(31550458-31550511)
chr5 (247-303)||(21852579-21852635)
chr5 (247-303)||(21869103-21869159)
chr5 (11-94)||(23125370-23125454)
[»] scaffold0632 (1 HSPs)
scaffold0632 (177-366)||(4390-4580)
[»] scaffold0111 (1 HSPs)
scaffold0111 (177-367)||(33035-33225)
[»] chr2 (30 HSPs)
chr2 (205-367)||(35037884-35038046)
chr2 (176-314)||(15944485-15944623)
chr2 (176-314)||(35138592-35138730)
chr2 (176-314)||(35146928-35147066)
chr2 (176-314)||(41233772-41233910)
chr2 (177-314)||(14582925-14583062)
chr2 (177-314)||(15953000-15953137)
chr2 (177-314)||(38168285-38168422)
chr2 (176-314)||(20621517-20621655)
chr2 (176-314)||(42565857-42565995)
chr2 (177-314)||(42574481-42574618)
chr2 (177-279)||(17687361-17687463)
chr2 (177-305)||(20372251-20372378)
chr2 (177-288)||(25483601-25483712)
chr2 (177-288)||(25491207-25491318)
chr2 (177-272)||(44372705-44372800)
chr2 (177-272)||(44388616-44388711)
chr2 (177-302)||(35303737-35303862)
chr2 (177-281)||(27606606-27606709)
chr2 (177-279)||(24285696-24285798)
chr2 (177-279)||(42249418-42249520)
chr2 (179-279)||(26903296-26903396)
chr2 (177-279)||(34070567-34070669)
chr2 (176-279)||(24292371-24292475)
chr2 (8-94)||(22389179-22389265)
chr2 (9-75)||(39730111-39730178)
chr2 (226-303)||(18989312-18989389)
chr2 (177-238)||(21322814-21322875)
chr2 (177-227)||(20917520-20917570)
chr2 (247-300)||(27683381-27683434)
[»] scaffold0173 (1 HSPs)
scaffold0173 (176-356)||(815-995)
[»] scaffold0083 (1 HSPs)
scaffold0083 (177-305)||(15813-15941)
[»] chr1 (22 HSPs)
chr1 (177-356)||(32137640-32137819)
chr1 (177-367)||(41746567-41746758)
chr1 (176-314)||(3432818-3432956)
chr1 (176-314)||(31548522-31548660)
chr1 (177-314)||(31539954-31540091)
chr1 (177-314)||(35103992-35104129)
chr1 (176-302)||(29221429-29221554)
chr1 (14-102)||(23223131-23223220)
chr1 (177-302)||(44320132-44320257)
chr1 (177-279)||(21498861-21498963)
chr1 (179-271)||(51058359-51058450)
chr1 (179-294)||(28457556-28457673)
chr1 (296-367)||(13450142-13450213)
chr1 (253-302)||(8241438-8241487)
chr1 (17-93)||(31313020-31313097)
chr1 (228-300)||(8579341-8579413)
chr1 (41-92)||(27754786-27754837)
chr1 (177-211)||(20314058-20314092)
chr1 (41-95)||(31313107-31313161)
chr1 (247-300)||(12465698-12465751)
chr1 (177-238)||(52100017-52100078)
chr1 (10-65)||(14397286-14397342)
[»] scaffold0209 (1 HSPs)
scaffold0209 (177-314)||(12-149)
[»] scaffold0039 (1 HSPs)
scaffold0039 (177-268)||(40807-40898)
[»] scaffold0170 (1 HSPs)
scaffold0170 (177-303)||(7129-7255)
[»] scaffold0431 (1 HSPs)
scaffold0431 (177-302)||(139-264)
[»] scaffold0222 (1 HSPs)
scaffold0222 (177-302)||(20422-20547)
[»] scaffold0863 (1 HSPs)
scaffold0863 (176-279)||(335-438)
[»] scaffold0991 (1 HSPs)
scaffold0991 (177-270)||(345-438)
[»] scaffold0048 (2 HSPs)
scaffold0048 (177-249)||(7622-7694)
scaffold0048 (276-367)||(7530-7621)
[»] scaffold0015 (1 HSPs)
scaffold0015 (175-271)||(192526-192622)
[»] scaffold0044 (2 HSPs)
scaffold0044 (176-279)||(65501-65604)
scaffold0044 (176-279)||(81749-81852)
[»] scaffold0389 (1 HSPs)
scaffold0389 (176-279)||(415-518)
[»] scaffold0290 (1 HSPs)
scaffold0290 (226-303)||(15760-15837)
[»] scaffold1487 (1 HSPs)
scaffold1487 (184-223)||(762-801)
[»] scaffold0514 (1 HSPs)
scaffold0514 (176-238)||(10912-10974)
[»] scaffold0027 (2 HSPs)
scaffold0027 (245-356)||(65589-65701)
scaffold0027 (176-210)||(65710-65744)
[»] scaffold0990 (1 HSPs)
scaffold0990 (60-112)||(3075-3127)
[»] scaffold0315 (1 HSPs)
scaffold0315 (247-303)||(10595-10651)
[»] scaffold0323 (1 HSPs)
scaffold0323 (300-367)||(17602-17669)
[»] scaffold0484 (1 HSPs)
scaffold0484 (177-226)||(11457-11507)
[»] scaffold0455 (1 HSPs)
scaffold0455 (247-300)||(6056-6109)
[»] scaffold0047 (1 HSPs)
scaffold0047 (247-300)||(59736-59789)
[»] scaffold0007 (1 HSPs)
scaffold0007 (177-303)||(61288-61418)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 4e-82; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 15576518 - 15576688
Alignment:
Q  7 gggctggtcaaggcatttgtcacactcagtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcaccat 106  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15576518 gggctggtcaaggcatttgtcacactcagccatcatgtgattgtaccttactatgagattgaagcaattcgaaatagacattcaaggtctatatcaccat 15576617  T
Q  107 acacaccgaaggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagtatgct 177  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15576618 acacactggaggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagtatgct 15576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 179 - 367
Target Start/End: Original strand, 25991852 - 25992040
Alignment:
Q  179 tcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagag 278  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  25991852 tcataccccaaatgttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagaagaaatttcggtagag 25991951  T
Q  279 aggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    ||| |||||||||||| |||||||||||||| |||| || | || ||| ||||| |||| || ||||||||| ||||| || |||||||    
T  25991952 aggttactttgaagtacctcattttttattcagagtcggaccctcttctctctttatttactctttatttcattatttaatttccatct 25992040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 176 - 367
Target Start/End: Original strand, 5994698 - 5994890
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| || |    
T  5994698 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacaaaattttggca 5994797  T
Q  276 gagaggatactttgaagtaactcatttttt-attcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
     ||||| |||||||||||| |||||||||| |||| |||| |||| || |||||||||  |||||||||||||| ||||||| || |||||||    
T  5994798 aagaggttactttgaagtacctcattttttgattccgagtcgggccctcttccctctttgttttctttttattttagtatttaatttccatct 5994890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 177 - 356
Target Start/End: Original strand, 23925335 - 23925514
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  23925335 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcatttttgacgaaatttcggtag 23925434  T
Q  277 agaggatactttgaagtaactcatttttt-attcggagttgggctctgttccctcttcattttctttttatttcagtattt 356  Q
    ||| | |||||||||||| |||||||||| |||| ||||  ||| || |||||||||  |||| |||||||||| ||||||    
T  23925435 agatgttactttgaagtacctcattttttgattccgagtcaggccctcttccctctttgtttt-tttttatttcggtattt 23925514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 176 - 356
Target Start/End: Original strand, 33298084 - 33298263
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |    
T  33298084 ctgtcataccccaacttttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgaca 33298183  T
Q  276 gagaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtattt 356  Q
     ||| | |||||||||||| |||||||||||||| |||| || | || ||| ||||| ||||| |||||||||||||||||    
T  33298184 aaga-gttactttgaagtacctcattttttattccgagtaggacccttttctctctttattttatttttatttcagtattt 33298263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 25550295 - 25550432
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| || ||    
T  25550295 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcaaacgaaattttggcag 25550394  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  25550395 agaggttactttgaagtacctcattttttattccgagt 25550432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 177 - 319
Target Start/End: Original strand, 13825703 - 13825845
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||  ||    
T  13825703 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcaggaattttcgtcgtttcagacgaaatttcgacag 13825802  T
Q  277 agaggatactttgaagtaactcattttttattcggagttgggc 319  Q
    ||||| |||||||||||| ||||||||| |||| |||| ||||    
T  13825803 agaggttactttgaagtacctcatttttgattccgagtcgggc 13825845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 5004061 - 5004198
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  5004061 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 5004160  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
     |||| |||||||||||| ||||||||| |||| ||||    
T  5004161 ggaggttactttgaagtacctcatttttgattccgagt 5004198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 30824594 - 30824457
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || |     
T  30824594 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30824495  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
    ||||| |||||||||||| ||||||||| |||| ||||    
T  30824494 agaggttactttgaagtacctcatttttgattccgagt 30824457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 25506606 - 25506469
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||    
T  25506606 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgttttagacgaaatttcggcag 25506507  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
    ||||| |||||| || || ||||||||| |||| ||||    
T  25506506 agaggttactttaaaatacctcatttttgattccgagt 25506469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 35091741 - 35091610
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| || |     
T  35091741 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcggaaattttcgtcgtttcagacgaaattttggcaa 35091642  T
Q  277 agaggatactttgaagtaactcattttttatt 308  Q
     |||| |||||||||||| |||||||||||||    
T  35091641 ggaggttactttgaagtacctcattttttatt 35091610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 11279837 - 11279974
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |     
T  11279837 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 11279936  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  11279937 agaggttactttgaagtacctcattttttattccgagt 11279974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 176 - 306
Target Start/End: Complemental strand, 15391677 - 15391547
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||  |    
T  15391677 ctgtcatatcccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagccaggaattttcgtcgtttcagacgaaatttcgaca 15391578  T
Q  276 gagaggatactttgaagtaactcatttttta 306  Q
     ||||| |||||||||||| |||||||||||    
T  15391577 aagaggttactttgaagtacctcatttttta 15391547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 39 - 173
Target Start/End: Complemental strand, 15574599 - 15574462
Alignment:
Q  39 tcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcaccatacacaccga---aggcattttcaaggttatca 135  Q
    ||||||||||||| ||| ||||||||||||||||||| || ||||||||||||||| |||||||  ||||||||  |   |||  ||||||||||||| |    
T  15574599 tcatgtgattgtatcttgctatgagattgaagcaattatacatagacattcaaggtttatatcattatacacacatatagaggacttttcaaggttataa 15574500  T
Q  136 cgtggttgaggttaaggtggggtatatttgagaaagta 173  Q
    ||||| ||||||||||||||| |||||||| |||||||    
T  15574499 cgtggctgaggttaaggtgggatatatttgggaaagta 15574462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 13490191 - 13490297
Alignment:
Q  175 gctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggt 274  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | ||||  ||||||||||| |  |||||||| |||| ||||     
T  13490191 gctgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatctgtaaaaccgggaattttcgttatttcagacaaaatctcggc 13490290  T
Q  275 agagagg 281  Q
    |||||||    
T  13490291 agagagg 13490297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 5489184 - 5489132
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5489184 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgt 5489132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 16527021 - 16526916
Alignment:
Q  7 gggctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcacca 105  Q
    |||||||||||| ||| | |||||||| |||| ||||||||||||||||| |||| | ||| ||||||||||||| ||||||||||||| ||||||| ||    
T  16527021 gggctggtcaagacatatttcacactccagtcgtcatgtgattgtacctttctataacattaaagcaattctaaacagacattcaaggtatatatcatca 16526922  T
Q  106 tacaca 111  Q
     |||||    
T  16526921 cacaca 16526916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 12972811 - 12972883
Alignment:
Q  9 gctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaa 80  Q
    ||||||||||||||||| ||||||| | |||||||||||||||||||| ||||||||||||| ||||||||||    
T  12972811 gctggtcaaggcatttgccacactccaatcatcatgtgattgtaccttgctatgagattgaatcaattctaaa 12972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 11053701 - 11053764
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 238  Q
    ||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||    
T  11053701 ctgtcataccccaaattttgaccacttttttctatttttaccaaattttattcgtatttttaaa 11053764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 367
Target Start/End: Complemental strand, 5489124 - 5489040
Alignment:
Q  283 tactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    ||||||||||||  |||||||| ||||  ||| || | |||||||||||| ||||||||||||||||||||||| || |||||||    
T  5489124 tactttgaagtacttcatttttgattccaagtcggaccctgttccctctttattttctttttatttcagtatttaatttccatct 5489040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 26526708 - 26526640
Alignment:
Q  236 aaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttt 304  Q
    |||||||||||||||| |||||||||||||||| |||| |||| || ||||||||| || |||||||||    
T  26526708 aaagtcgggaattttcgtcgtttcagacgaaatatcggcagagtggttactttgaattacctcattttt 26526640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 30114444 - 30114505
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 238  Q
    |||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||    
T  30114444 tgtcataccccaaattttgaccactttt-tctatttttaccaaattttattcgtatttttaaa 30114505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 17860886 - 17860940
Alignment:
Q  119 cattttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagta 173  Q
    ||||||||||||||| |||||  ||||||||||||||| ||||||||| ||||||    
T  17860886 cattttcaaggttataacgtgactgaggttaaggtgggatatatttgaaaaagta 17860940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 15140726 - 15140779
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  15140726 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 15140779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 23985100 - 23985047
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23985100 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23985047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 28127510 - 28127457
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  28127510 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 28127457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 176 - 367
Target Start/End: Original strand, 12996475 - 12996666
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  12996475 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggta 12996574  T
Q  276 gagaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    |||||| |||||||||||| |||||||||||||| ||||  | | || ||| |||||  |||||||||||||||||||||| || |||||||    
T  12996575 gagaggttactttgaagtacctcattttttattccgagtcagtccctcttctctctttgttttctttttatttcagtatttaatttccatct 12996666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 175 - 367
Target Start/End: Original strand, 52295602 - 52295795
Alignment:
Q  175 gctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggt 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||     
T  52295602 gctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggc 52295701  T
Q  275 agagaggatactttgaagtaactcatttttt-attcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    ||||||  |||||||||||| |||||||||| |||| |||| |||| || ||| ||||| ||||||||||||||||||||||| || |||||||    
T  52295702 agagagattactttgaagtacctcattttttgattccgagtcgggccctcttctctctttattttctttttatttcagtatttaatttccatct 52295795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 177 - 367
Target Start/End: Complemental strand, 27343756 - 27343566
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   ||    
T  27343756 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacag 27343657  T
Q  277 agaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    ||||| |||||||||||| |||||||||||||| |||| || | || ||| ||||| ||||||||||||||||||||||| || |||||||    
T  27343656 agaggttactttgaagtacctcattttttattccgagtcggaccctcttctctctttattttctttttatttcagtatttaatttccatct 27343566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 8094348 - 8094210
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || |    
T  8094348 ctgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 8094249  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
     ||||| |||||||||||| ||||||||| |||| ||||    
T  8094248 aagaggttactttgaagtacctcatttttgattccgagt 8094210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 8103153 - 8103016
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || |     
T  8103153 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 8103054  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
    ||||| |||||||||||| ||||||||| |||| ||||    
T  8103053 agaggttactttgaagtacctcatttttgattccgagt 8103016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 4523745 - 4523608
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |     
T  4523745 tgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 4523646  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  4523645 agaggttactttgaagtacctcattttttattccgagt 4523608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 177 - 356
Target Start/End: Complemental strand, 21532369 - 21532190
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |     
T  21532369 tgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgaca- 21532271  T
Q  277 agaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcatttt-ctttttatttcagtattt 356  Q
    | ||  |||||||||||| |||||||||||||| |||| || | || ||| ||||| |||||  |||||||||| ||||||    
T  21532270 aaagattactttgaagtacctcattttttattctgagtcggacccttttctctctttattttattttttatttcggtattt 21532190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 177 - 302
Target Start/End: Complemental strand, 12428543 - 12428418
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| | | ||||||| |  |||||||||||||||||        
T  12428543 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcgacga 12428444  T
Q  277 agaggatactttgaagtaactcattt 302  Q
    ||||  |||||||||||| |||||||    
T  12428443 agagtttactttgaagtacctcattt 12428418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 10638328 - 10638400
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaatttt 250  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  10638328 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgta-ttttaaagtcgggaatttt 10638400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 33188765 - 33188859
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttc 271  Q
    |||||||||||||||||||||| |||||| |||||| ||| || ||||||| ||||||||||||  | |||||||| |||||||||||||||||||    
T  33188765 ctgtcataccccaaattttgacaactttt-tctatttttatcctttttatttgtatttttaaagctgagaattttcgtcgtttcagacgaaatttc 33188859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 367
Target Start/End: Original strand, 10638404 - 10638496
Alignment:
Q  275 agagaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    ||||||| |||||||||||| |||||||||||||| |||| || | || | | ||||| ||||||||||||||||||||||| || |||||||    
T  10638404 agagaggttactttgaagtacctcattttttattccgagtcggaccctctcctctctttattttctttttatttcagtatttaatttccatct 10638496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 302
Target Start/End: Original strand, 3424331 - 3424454
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||| || ||||||||| | |||||| |||||||| || ||| |||| |  |||  ||| ||||| |||||||||||||||       
T  3424331 tgtcataccccaaattttgatcatttttctctaattttaccccttttattcttactttaaaagccaagaaagttcgtcgttccagacgaaatttcgg--c 3424428  T
Q  277 agaggatactttgaagtaactcattt 302  Q
    ||||| |||||||||||| |||||||    
T  3424429 agaggttactttgaagtacctcattt 3424454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 15787861 - 15787927
Alignment:
Q  39 tcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcacca 105  Q
    |||| |||||||||||| ||||||||||||| ||||| |||||||||||| || |||||||| ||||    
T  15787861 tcatttgattgtaccttgctatgagattgaatcaattttaaatagacatttaaagtctatattacca 15787927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 12402907 - 12402956
Alignment:
Q  232 ttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagagg 281  Q
    |||||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  12402907 ttttaaagtcaggaattttcgtcgtttcagacgaaatttcggcagagagg 12402956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 19772241 - 19772313
Alignment:
Q  228 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    ||||||| ||||||| |  |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  19772241 gtattttaaaagtcgcgttttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 19772313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 19647405 - 19647352
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  19647405 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 19647352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 10814333 - 10814393
Alignment:
Q  296 ctcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtattt 356  Q
    |||||||||||||| ||||  | | || ||||||||| ||||||||||||||| |||||||    
T  10814333 ctcattttttattccgagtcagaccctcttccctctttattttctttttattttagtattt 10814393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 177 - 365
Target Start/End: Complemental strand, 35421 - 35233
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |     
T  35421 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 35322  T
Q  277 agaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccat 365  Q
    ||||| |||||||||||| |||||||||||||| |||| |||| || ||| || || ||||||||||||||||||||||| || |||||    
T  35321 agaggttactttgaagtacctcattttttattccgagtcgggccctcttcgctttttattttctttttatttcagtatttaatttccat 35233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 176 - 367
Target Start/End: Original strand, 23463 - 23655
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttt-taaagtcgggaattttcatcgtttcagacgaaatttcggt 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||    
T  23463 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattttttaaagtcgggaattttcatcatttctgacgaaatttcggt 23562  T
Q  275 agagaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    ||||||| |||||||||||| ||||||||| |||| |||| |||| || |||||||||  |||||||||||||| ||||||| || |||||||    
T  23563 agagaggttactttgaagtacctcatttttgattccgagtcgggccctcttccctctttgttttctttttatttaagtatttaatttccatct 23655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 176 - 367
Target Start/End: Original strand, 10439936 - 10440127
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  10439936 ctgtcataccccaaattttgaccacttttctctattcttgcccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggca 10440035  T
Q  276 gagaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    |||||| |||||| ||||| |||||||||||||| ||||  | | || ||  ||||| ||||||||||||||||||||||| || |||||||    
T  10440036 gagaggttactttaaagtacctcattttttattccgagtcagaccctcttttctctttattttctttttatttcagtatttaatttccatct 10440127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 18304457 - 18304326
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  18304457 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 18304358  T
Q  277 agaggatactttgaagtaactcattttttatt 308  Q
    ||||| |||||||||||| |||||||||||||    
T  18304357 agaggttactttgaagtacctcattttttatt 18304326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 12978455 - 12978592
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  12978455 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 12978554  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
     |||| |||||||||||| ||||||||| |||| ||||    
T  12978555 ggaggttactttgaagtacctcatttttgattccgagt 12978592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 4952463 - 4952325
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| || |    
T  4952463 ctgtcatacctcaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaattttggca 4952364  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
     ||||| |||||||||||| |||||||||||||| ||||    
T  4952363 aagaggttactttgaagtacctcattttttattccgagt 4952325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 13831499 - 13831637
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |    
T  13831499 ctgtcataccctaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 13831598  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
     ||||| |||||||||||| |||||||||||||| ||||    
T  13831599 aagaggttactttgaagtacctcattttttattccgagt 13831637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 13839530 - 13839668
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |    
T  13839530 ctgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 13839629  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
     ||||| |||||||||||| |||||||||||||| ||||    
T  13839630 aagaggttactttgaagtacctcattttttattccgagt 13839668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 21471486 - 21471316
Alignment:
Q  7 gggctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcacca 105  Q
    ||||||||||||||||||| || |||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||    
T  21471486 gggctggtcaaggcatttgccatactccagtcgtcatgtgattgtaccttgctatgagattgaagcaattctaaatagacattcaatgtatatatcatca 21471387  T
Q  106 tacacac---cgaaggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagta 173  Q
     ||||||   | ||||  ||||||||||||| |||||  | |||||||| | || |||||||  |||||||    
T  21471386 cacacacatacaaaggacttttcaaggttataacgtgactaaggttaagttaggatatattttggaaagta 21471316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 273
Target Start/End: Original strand, 30244775 - 30244871
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg 273  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| | ||||||| || ||||||||    
T  30244775 tgtcatacctcaaattttgaccacttttctctatttttatccattttattcgtatttttaaagtcaggaattttcgttgtttcagtcgtaatttcgg 30244871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 4941643 - 4941581
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaa 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4941643 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaa 4941581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 176 - 302
Target Start/End: Complemental strand, 21663089 - 21662962
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtat-ttttaaagtcgggaattttcatcgtttcagacgaaatttcggt 274  Q
    ||||||||||||||||||||| ||||||| ||| || ||||||||||||||||||| |||||||| || || | ||| |||||| ||||||||||||       
T  21663089 ctgtcataccccaaattttgatcacttttatctgtttttacccattttattcgtattttttaaagccgagagtcttcgtcgttttagacgaaatttcaac 21662990  T
Q  275 agagaggatactttgaagtaactcattt 302  Q
    || |||| |||||||||||| |||||||    
T  21662989 agggaggttactttgaagtacctcattt 21662962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 30245568 - 30245672
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||| || ||||||||||||||||||||| ||| ||||||||||||||||||| | ||| | ||||||| | ||||||| || |||||||| ||    
T  30245568 tgtcatacccaaatttttgaccacttttctctatttttatccattttattcgtatttttcatgtcagaaattttcgttgtttcagtcgtaatttcggaag 30245667  T
Q  277 agagg 281  Q
    |||||    
T  30245668 agagg 30245672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 281
Target Start/End: Original strand, 30255420 - 30255516
Alignment:
Q  185 cccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagagg 281  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||| | ||| | ||||||| | ||||||| || |||||||| |||||||    
T  30255420 cccaaattttgaccacttttctctatttttatccattttattcgtatttttcatgtcagaaattttcgttgtttcagtcgtaatttcggcagagagg 30255516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 5722077 - 5721920
Alignment:
Q  21 atttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcaccatacacaccga---a 116  Q
    ||||||||||||| |||  |||| |||||||| ||| ||||||||||||||||||||||||||| |||||||||   |||| |||| ||||||  |   |    
T  5722077 atttgtcacactccagtagtcatttgattgtatcttgctatgagattgaagcaattctaaataggcattcaaggcacatattaccagacacacatataga 5721978  T
Q  117 ggcattttcaaggttatcacgtggttgaggtt-aaggtggggtatatttgagaaagta 173  Q
    ||  ||||||||||||| |||||| | ||||| |||||||| ||||||| ||||||||    
T  5721977 ggttttttcaaggttataacgtggcttaggttaaaggtgggatatattttagaaagta 5721920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 7955875 - 7955796
Alignment:
Q  14 tcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaag 92  Q
    |||||||||||| | ||||| ||||||||||||||||||||||  ||||||| | ||||||||| ||| ||||| |||||    
T  7955875 tcaaggcatttgccccactccagtcatcatgtgattgtaccttgttatgagactaaagcaattccaaacagacactcaag 7955796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 1955746 - 1955691
Alignment:
Q  248 tttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 303  Q
    |||| ||||||||||| ||||||||| ||||||| |||||||||| | ||||||||    
T  1955746 tttcgtcgtttcagacaaaatttcggcagagaggttactttgaagcacctcatttt 1955691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 1074125 - 1074076
Alignment:
Q  39 tcatgtgattgtaccttactatgagattgaagcaattctaaatagacatt 88  Q
    |||||||||||||||||  ||||||||||||||||||  ||| |||||||    
T  1074125 tcatgtgattgtaccttgttatgagattgaagcaatttcaaacagacatt 1074076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 20114119 - 20114066
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  20114119 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 20114066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 38247996 - 38248049
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  38247996 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 38248049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 16166754 - 16166702
Alignment:
Q  41 atgtgattgtaccttactatgagattgaagcaattctaaatagacattcaagg 93  Q
    ||||||||||||| || ||| | |||||| |||||||||| ||||||||||||    
T  16166754 atgtgattgtaccatattataaaattgaaacaattctaaacagacattcaagg 16166702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 177 - 367
Target Start/End: Original strand, 50824352 - 50824546
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||    
T  50824352 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 50824451  T
Q  277 agaggatactttgaagtaactcattttttattcggagttgggctctgttccc----tcttcattttctttttatttcagtatttgatgtccatct 367  Q
    ||||| |||||||||||| |||||||||||||| |||| || | || ||| |    |||| ||||||||||||||||||||||| || |||||||    
T  50824452 agaggttactttgaagtacctcattttttattccgagtcggaccctcttctctctttctttattttctttttatttcagtatttaatttccatct 50824546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 177 - 367
Target Start/End: Complemental strand, 50851508 - 50851314
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||    
T  50851508 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 50851409  T
Q  277 agaggatactttgaagtaactcattttttattcggagttgggctctgttccc----tcttcattttctttttatttcagtatttgatgtccatct 367  Q
    ||||| |||||||||||| |||||||||||||| |||| || | || ||| |    |||| ||||||||||||||||||||||| || |||||||    
T  50851408 agaggttactttgaagtacctcattttttattccgagtcggaccctcttctctctttctttattttctttttatttcagtatttaatttccatct 50851314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 176 - 367
Target Start/End: Complemental strand, 14538671 - 14538479
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg-t 274  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||      
T  14538671 ctgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggca 14538572  T
Q  275 agagaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    | ||||| |||||||||||| |||||||||||||| |||| |||| || ||| ||||| ||||||||||||||||||| ||| || |||||||    
T  14538571 aaagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctttattttctttttatttcagtgtttaatttccatct 14538479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 176 - 367
Target Start/End: Complemental strand, 27341401 - 27341209
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |    
T  27341401 ctgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggca 27341302  T
Q  276 gagaggatactttgaagtaactca-ttttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    || ||| |||||||||||| |||| |||||||||| ||||  ||| || ||||||||| ||||||||| ||||||||||||| || |||||||    
T  27341301 gaaaggttactttgaagtacctcatttttttattccgagtcaggccctcttccctctttattttctttctatttcagtatttaatttccatct 27341209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 177 - 367
Target Start/End: Original strand, 2211239 - 2211429
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| |     
T  2211239 tgtcataccctaaattttgaccacttttctctattcttacctattttattcgtatttttaaagtcaggaattttcgtcgtttaagacgaaatttcggcaa 2211338  T
Q  277 agaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    ||||| || ||| || || |||||||||||||| ||||  ||| || ||| ||||| ||||||||||||||||||||||| || |||||||    
T  2211339 agagggtattttaaaatacctcattttttattccgagtcaggccctcttctctctttattttctttttatttcagtatttaatttccatct 2211429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 8154710 - 8154572
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |    
T  8154710 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 8154611  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
     ||||| |||||||||||| |||||||||||||| ||||    
T  8154610 aagaggttactttgaagtacctcattttttattccgagt 8154572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 41006555 - 41006693
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  41006555 ctgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 41006654  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  41006655 aggaggttactttgaagtacctcatttttgattccgagt 41006693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 41015335 - 41015473
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  41015335 ctgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 41015434  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  41015435 aggaggttactttgaagtacctcatttttgattccgagt 41015473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 176 - 319
Target Start/End: Complemental strand, 9525500 - 9525357
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |    
T  9525500 ctgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggca 9525401  T
Q  276 gagaggatactttgaagtaactcattttttattcggagttgggc 319  Q
    || ||| |||||| || || |||||||||||||| |||| ||||    
T  9525400 gaaaggttactttaaaatacctcattttttattccgagtcgggc 9525357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 177 - 319
Target Start/End: Complemental strand, 9555173 - 9555031
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||| ||    
T  9555173 tgtcataccccaaattttgatcacttttctctattcttacccattttactcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggcag 9555074  T
Q  277 agaggatactttgaagtaactcattttttattcggagttgggc 319  Q
    | ||| |||||| || || |||||||||||||| |||| ||||    
T  9555073 aaaggttactttaaaatacctcattttttattccgagtcgggc 9555031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 177 - 356
Target Start/End: Complemental strand, 28470282 - 28470103
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||  |     
T  28470282 tgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcagaaattttcgtcgtttcagacgaaatttcgaca- 28470184  T
Q  277 agaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcatttt-ctttttatttcagtattt 356  Q
    | ||  |||| ||||||| |||||||||||||| |||| || | || ||| ||||| |||||  |||||||||| ||||||    
T  28470183 aaagattactatgaagtacctcattttttattctgagtcggacccttttctctctttattttattttttatttcggtattt 28470103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 176 - 302
Target Start/End: Original strand, 17933654 - 17933780
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||| |  ||||||||||||||||        
T  17933654 ctgtcataccccaaattttgaccaattttctctatttttacccattttattcgtatttttaaagtcggaaattttcgttatttcagacgaaatttcttcg 17933753  T
Q  276 gagaggatactttgaagtaactcattt 302  Q
    |||||| |||||||||||| |||||||    
T  17933754 gagaggttactttgaagtacctcattt 17933780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 179 - 303
Target Start/End: Complemental strand, 43470615 - 43470492
Alignment:
Q  179 tcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagag 278  Q
    ||||||||||||||||||| |||||| |||||| |||||| |||||||||||||||||||| || |||||||  ||||||||||||||||||||| ||||    
T  43470615 tcataccccaaattttgactactttt-tctatttttaccctttttattcgtatttttaaagccgagaattttattcgtttcagacgaaatttcggcagag 43470517  T
Q  279 aggatactttgaagtaactcatttt 303  Q
    ||| |||||||||||| ||||||||    
T  43470516 aggttactttgaagtacctcatttt 43470492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 176 - 302
Target Start/End: Original strand, 17919198 - 17919324
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||  ||||||| |  |||||||||||||||||       
T  17919198 ctgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatttttaaagccgaaaattttcgttatttcagacgaaatttcgtcg 17919297  T
Q  276 gagaggatactttgaagtaactcattt 302  Q
    |||||| |||||| ||||| |||||||    
T  17919298 gagaggttactttaaagtacctcattt 17919324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 17628265 - 17628329
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtc 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17628265 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtc 17628329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 302
Target Start/End: Complemental strand, 16816269 - 16816145
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| ||||||| |  ||||||||||||||| |       
T  16816269 ctgtcataccc-aaattttgaccacttttctctatttttactcattttattcgtatttttaaagccggaaattttcgttatttcagacgaaattttgacg 16816171  T
Q  276 gagaggatactttgaagtaactcattt 302  Q
    |||||| |||||||||||| |||||||    
T  16816170 gagagg-tactttgaagtacctcattt 16816145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 177 - 303
Target Start/End: Original strand, 21186747 - 21186872
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||||||| ||| || ||| |||||||||||||| |||||||| || |||||||| | |||||| |||||||||||| ||    
T  21186747 tgtcataccccaaattttgaccacttttatctgtttttatccattttattcgtacttttaaagccgagaattttcgttgtttcaaacgaaatttcggcag 21186846  T
Q  277 agaggatactttgaagtaactcatttt 303  Q
     |||| || |||||| || ||||||||    
T  21186847 ggagg-tattttgaaatacctcatttt 21186872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 11520826 - 11520659
Alignment:
Q  10 ctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcaccatac 108  Q
    |||||||||||||||| ||||||| |||| |||| |||||||||||| ||||||||||||||||||| |||  ||||||||||||| |||||||  | ||    
T  11520826 ctggtcaaggcatttgccacactctagtcgtcatatgattgtaccttgctatgagattgaagcaattataagcagacattcaaggtatatatcataacac 11520727  T
Q  109 acaccga---aggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagta 173  Q
    |||   |   |||  ||||||||||||| |||||| |||||| |||||||| |||||||  |||||||    
T  11520726 acagacatagaggacttttcaaggttataacgtggatgaggtaaaggtgggatatatttaggaaagta 11520659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 18349560 - 18349658
Alignment:
Q  181 ataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagaga 279  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||||| |||| ||| | | |||||| |||||||||||||| |||||    
T  18349560 ataccccaaattttgacaacttttctctatttttacacattttattcgtacttttaaaatcggaaatgtccgtcgttttagacgaaatttcggcagaga 18349658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 8197762 - 8197659
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | | |||||| |||| ||||||||| |    
T  8197762 ctgtcataccccaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacaaaatttcggca 8197663  T
Q  276 gaga 279  Q
    ||||    
T  8197662 gaga 8197659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 30541 - 30445
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg 273  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||| || ||| |||||||  ||| ||| | | |||||| ||||||||||||||    
T  30541 tgtcataccccaaattttgaccacttttctctatttttacacattttgtttgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcgg 30445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 18039011 - 18039105
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttc 271  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||||||| || | || |||   || | |||||||||||||||||    
T  18039011 tgtcataccccaaattttgaccacttttctcgctttttacccattttattcgtattttaaacgccgagaaggatcgttgtttcagacgaaatttc 18039105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 13272670 - 13272723
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| |||||||||||||||||||| |||||    
T  13272670 ttttaatcatttcagacaaaatttcggcagagaggatactttgaagtacctcat 13272723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 5632921 - 5633000
Alignment:
Q  14 tcaaggcatttgtcacact-cagtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaag 92  Q
    |||||| |||||||||||| ||||| | |||| ||| |||||| | || ||||||||||||||||||| | |||||||||    
T  5632921 tcaaggaatttgtcacactgcagtcgtaatgtaattataccttgcaattagattgaagcaattctaaacatacattcaag 5633000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 13509370 - 13509299
Alignment:
Q  296 ctcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    ||||||||| |||| || | |||| || ||||||||| ||||||||||||||||||  ||| ||||||||||    
T  13509370 ctcatttttgattccgaatcgggccctcttccctctttattttctttttatttcagcctttaatgtccatct 13509299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 4506032 - 4505979
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  4506032 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 4505979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 16288692 - 16288733
Alignment:
Q  262 acgaaatttcggtagagaggatactttgaagtaactcatttt 303  Q
    |||||||||||| ||||||| |||||||||||| ||||||||    
T  16288692 acgaaatttcggcagagaggttactttgaagtacctcatttt 16288733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 17657630 - 17657683
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  17657630 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 17657683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 27976552 - 27976605
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  27976552 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 27976605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 1477758 - 1477814
Alignment:
Q  246 attttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattt 302  Q
    ||||| ||| |||||||| ||||||||| || |||| |||||||||||| |||||||    
T  1477758 atttttatcatttcagacaaaatttcggcagggaggttactttgaagtacctcattt 1477814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 6959006 - 6958978
Alignment:
Q  176 ctgtcataccccaaattttgaccactttt 204  Q
    |||||||||||||||||||||||||||||    
T  6959006 ctgtcataccccaaattttgaccactttt 6958978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 17618174 - 17618130
Alignment:
Q  256 tttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||||||| ||||||||| || ||||||||||||||||| |||||    
T  17618174 tttcagacaaaatttcggcagggaggatactttgaagtacctcat 17618130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 177 - 367
Target Start/End: Original strand, 10993 - 11182
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| ||    
T  10993 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattgttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 11092  T
Q  277 agaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    ||||| |||||||||||| |||| |||| |||| || | |||| || ||| ||||| ||||||||||||||||||||||| || |||||||    
T  11093 agaggttactttgaagtacctca-ttttgattccgaatcgggccctcttctctctttattttctttttatttcagtatttaatttccatct 11182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 177 - 319
Target Start/End: Original strand, 17973565 - 17973707
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  17973565 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 17973664  T
Q  277 agaggatactttgaagtaactcattttttattcggagttgggc 319  Q
    ||||| |||||||||||| |||||||||||||| |||| ||||    
T  17973665 agaggttactttgaagtacctcattttttattccgagtcgggc 17973707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 39837628 - 39837490
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |    
T  39837628 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 39837529  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
     ||||| |||||||||||| |||||||||||||| ||||    
T  39837528 aagaggttactttgaagtacctcattttttattccgagt 39837490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 25579877 - 25579740
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  25579877 tgtcataccctaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 25579778  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  25579777 agaggttactttgaagtacctcattttttattccgagt 25579740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 30938282 - 30938419
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  30938282 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30938381  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
     |||| |||||||||||| ||||||||| |||| ||||    
T  30938382 ggaggttactttgaagtacctcatttttgattccgagt 30938419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 176 - 355
Target Start/End: Complemental strand, 26873670 - 26873490
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||  |    
T  26873670 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttgtaatgtcggaaattttcgtcgtttcagacgaaatttcgaca 26873571  T
Q  276 gagaggatactttgaagtaactcatttttt-attcggagttgggctctgttccctcttcattttctttttatttcagtatt 355  Q
     ||||| |||||| ||||| || ||||||| |||| |||| ||||  | ||| ||||| ||||||||||||||||||||||    
T  26873570 aagaggttactttaaagtaccttattttttgattccgagtagggccgtcttctctctttattttctttttatttcagtatt 26873490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 177 - 355
Target Start/End: Complemental strand, 26876119 - 26875940
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||  |     
T  26876119 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaatgtcggaaatttttgtcgtttcagacgaaatttcgacaa 26876020  T
Q  277 agaggatactttgaagtaactcatttttt-attcggagttgggctctgttccctcttcattttctttttatttcagtatt 355  Q
    ||||| |||||| || || |||||||||| |||| |||| ||||  | ||| ||||| ||||||||||||||||||||||    
T  26876019 agaggttactttaaaatacctcattttttgattccgagtagggccatcttctctctttattttctttttatttcagtatt 26875940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 177 - 306
Target Start/End: Complemental strand, 39845670 - 39845541
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |     
T  39845670 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 39845571  T
Q  277 agaggatactttgaagtaactcatttttta 306  Q
    ||||| |||||||||||| |||||||||||    
T  39845570 agaggttactttgaagtacctcatttttta 39845541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 17664706 - 17664568
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |  |    
T  17664706 ctgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcatcgtttcagacgaaattttgaca 17664607  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
     ||| | |||||||||||| |||||||||||||| ||||    
T  17664606 aagaagttactttgaagtacctcattttttattccgagt 17664568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 1407138 - 1407001
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |     
T  1407138 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgtgaattttcgccgtttcagacgaaattttggcaa 1407039  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  1407038 agaggttactttgaagtacctcattttttattccgagt 1407001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 177 - 309
Target Start/End: Complemental strand, 4839847 - 4839715
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |     
T  4839847 tgtcataccccaaattttgaccgcttttctctattcttacctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 4839748  T
Q  277 agaggatactttgaagtaactcattttttattc 309  Q
    ||| | |||||||||||| ||||||||| ||||    
T  4839747 agaagttactttgaagtacctcatttttgattc 4839715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 17683861 - 17683724
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |  |     
T  17683861 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcgtcgtttcagacgaaattttgacaa 17683762  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
    ||| | |||||||||||| |||||||||||||| ||||    
T  17683761 agaagttactttgaagtacctcattttttattccgagt 17683724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 16052707 - 16052873
Alignment:
Q  11 tggtcaaggcatttgtcacact-cagtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcaccataca 109  Q
    ||||||||||||||| |||||| || || ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||   ||||||| || |||    
T  16052707 tggtcaaggcatttgccacacttcaatcgtcatgtgattgtaccttgctatgagattgaagcaattcgaaacagacattcaagaaatatatcatcacaca 16052806  T
Q  110 caccga---aggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagta 173  Q
    ||   |   |||| ||||||||||||| |||||  ||||| ||||||| | |||| || ||||||||    
T  16052807 cataaatagaggccttttcaaggttataacgtgactgaggataaggtgagatatagtttagaaagta 16052873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 22894959 - 22895054
Alignment:
Q  8 ggctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatca 102  Q
    |||| ||||||||||||| ||||||| |||  || | |||||||||||| ||||||||||||||| |||||||| ||||||||| ||| |||||||    
T  22894959 ggctagtcaaggcatttgccacactccagttgtcgtatgattgtacctttctatgagattgaagccattctaaacagacattcagggtatatatca 22895054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 279
Target Start/End: Original strand, 4582203 - 4582306
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    ||||||||||  |||||||||||||||||||||||| |||| |||||| ||| || |||||||  ||| ||| | | || ||| |||||||||||||| |    
T  4582203 ctgtcataccttaaattttgaccacttttctctatttttacacattttgttcatacttttaaaaccggaaatgtccgtcattttagacgaaatttcggca 4582302  T
Q  276 gaga 279  Q
    ||||    
T  4582303 gaga 4582306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 6670710 - 6670772
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 238  Q
    ||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||    
T  6670710 ctgtcataccccaaattttgaccactttt-tctatttttaccaaattttattcgtatttttaaa 6670772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 28901768 - 28901869
Alignment:
Q  11 tggtcaaggcatttgtcacac-tcagtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcaccataca 109  Q
    ||||||||| ||||||||| | |  ||| ||||||||||||| ||| ||| ||||||||||| ||||||||||||| || ||||| ||||||| || |||    
T  28901768 tggtcaaggaatttgtcactcgtttgtcgtcatgtgattgtatcttgctacgagattgaagc-attctaaatagacttttaaggtatatatcatcacaca 28901866  T
Q  110 cac 112  Q
    |||    
T  28901867 cac 28901869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 6663042 - 6663099
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttt 234  Q
    |||||||||||||||||| ||||||||| |||||| |||||  ||||||||||||||||    
T  6663042 tgtcataccccaaattttaaccactttt-tctatttttaccaaattttattcgtatttt 6663099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 6743444 - 6743501
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttt 234  Q
    |||||||||||||||||| ||||||||| |||||| |||||  ||||||||||||||||    
T  6743444 tgtcataccccaaattttaaccactttt-tctatttttaccaaattttattcgtatttt 6743501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 23090611 - 23090667
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 303  Q
    |||| ||| ||| ||||||||||| |  |||||||||||||||||||| ||||||||    
T  23090611 ttttaatcattttagacgaaatttggacagagaggatactttgaagtacctcatttt 23090667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 25700273 - 25700329
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 303  Q
    |||| ||| ||||| |||||||||||| || |||| |||||||||||| ||||||||    
T  25700273 ttttaatcatttcaaacgaaatttcggaagggaggttactttgaagtacctcatttt 25700329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 121228 - 121365
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  121228 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggtag 121327  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
    ||||| ||||||||||||| |||||||| |||| ||||    
T  121328 agaggttactttgaagtaaatcatttttgattccgagt 121365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 7e-59; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 176 - 367
Target Start/End: Complemental strand, 20372979 - 20372788
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |    
T  20372979 ctgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgaca 20372880  T
Q  276 gagaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    |||||| |||||||||||| |||||||||||||| |||| |  | || ||| ||| | ||||||| ||||||||| ||||| || |||||||    
T  20372879 gagaggttactttgaagtacctcattttttattccgagtcgaaccctcttctctcattattttctctttatttcattatttaatttccatct 20372788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 177 - 356
Target Start/End: Complemental strand, 29186343 - 29186164
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |     
T  29186343 tgtcataccccaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 29186244  T
Q  277 agaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtattt 356  Q
    ||||| |||||||||||  |||||||||||||| |||| || | || ||| ||||| ||||| |||||||||||||||||    
T  29186243 agaggttactttgaagtgcctcattttttattccgagtcggacccttttctctctttattttatttttatttcagtattt 29186164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 177 - 367
Target Start/End: Complemental strand, 20398700 - 20398510
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||    
T  20398700 tgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacag 20398601  T
Q  277 agaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    ||||| |||||||||||| |||||||||||||| |||| |  | || ||| ||| | ||||||| ||||||||| ||||| || |||||||    
T  20398600 agaggttactttgaagtacctcattttttattccgagtcgaaccctcttctctcattattttctctttatttcattatttaatttccatct 20398510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 176 - 350
Target Start/End: Complemental strand, 23350142 - 23349968
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |    
T  23350142 ctgtcataccccaaattttgaccatttttctctatttttacccattttattcgtatttttaaagtcgggaattctcgtcatttcagacgaaatttcggca 23350043  T
Q  276 gagaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttca 350  Q
     ||||| |||||||||||| |||||||||||||| |||| |||| || ||| ||||| ||||||| |||||||||    
T  23350042 aagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctttattttctctttatttca 23349968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 24956912 - 24956774
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  24956912 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 24956813  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  24956812 aggaggttactttgaagtacctcatttttgattccgagt 24956774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 24965375 - 24965237
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  24965375 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 24965276  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  24965275 aggaggttactttgaagtacctcatttttgattccgagt 24965237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 43598111 - 43597974
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || |     
T  43598111 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaa 43598012  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  43598011 agaggttactttgaagtacctcattttttattccgagt 43597974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 43603603 - 43603466
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || |     
T  43603603 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaa 43603504  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  43603503 agaggttactttgaagtacctcattttttattccgagt 43603466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 43609095 - 43608958
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || |     
T  43609095 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaa 43608996  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  43608995 agaggttactttgaagtacctcattttttattccgagt 43608958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 174 - 314
Target Start/End: Complemental strand, 1728227 - 1728087
Alignment:
Q  174 tgctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg 273  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |     
T  1728227 tgctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttga 1728128  T
Q  274 tagagaggatactttgaagtaactcattttttattcggagt 314  Q
     | ||||| |||||||||||| |||||||||||||| ||||    
T  1728127 caaagaggttactttgaagtacctcattttttattccgagt 1728087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 177 - 365
Target Start/End: Original strand, 31410890 - 31411078
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||  ||||||||| |||||| | |||||||||||  |     
T  31410890 tgtcataccccaaattttgaccacatttctctattctaacccattttattcgtatttttaaagttaggaattttcgtcgtttaaaacgaaatttcgacaa 31410989  T
Q  277 agaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccat 365  Q
    ||||| |||||||||||| ||||||||||||||  ||| |||| || ||| ||||| || |||||||||||||||||||| || |||||    
T  31410990 agaggttactttgaagtacctcattttttattctcagtcgggccctcttctctctttatcttctttttatttcagtatttaatttccat 31411078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 28852549 - 28852687
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |    
T  28852549 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggca 28852648  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
     ||||| |||||||||||| |||||||||||||| ||||    
T  28852649 aagaggttactttgaagtacctcattttttattccgagt 28852687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 28843940 - 28844077
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |     
T  28843940 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 28844039  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  28844040 agaggttactttgaagtacctcattttttattccgagt 28844077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 177 - 304
Target Start/End: Original strand, 31421789 - 31421916
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||  |     
T  31421789 tgtcatacccaaaattttgaccacttttctctattcttacccattttattcgtatttttgaagtcggaaattttcgtcgtttcagacaaaatttcgacaa 31421888  T
Q  277 agaggatactttgaagtaactcattttt 304  Q
    ||| | |||||||||||| |||||||||    
T  31421889 agatgttactttgaagtacctcattttt 31421916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 19223555 - 19223666
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| || |||||||||| ||||| |||  ||    
T  19223555 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattgtcgtcgtttcagatgaaatctcgacag 19223654  T
Q  277 agaggatacttt 288  Q
    ||||| ||||||    
T  19223655 agaggttacttt 19223666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 24841453 - 24841367
Alignment:
Q  7 gggctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaag 92  Q
    ||||||||||||| ||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||    
T  24841453 gggctggtcaagggatttgtcacactttagtcatcatgtgattggaccttactatgagattgaagcaattctaaacaaacattcaag 24841367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 17027225 - 17027056
Alignment:
Q  7 gggctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcacca 105  Q
    |||||| |||| |||||||||| |||| |||| |||||||||||| |||| |||||| ||| |||||||| |||| ||||| ||||||| | ||||| ||    
T  17027225 gggctgatcaatgcatttgtcatactccagtcgtcatgtgattgttccttcctatgacatttaagcaattataaacagacactcaaggtatttatcatca 17027126  T
Q  106 tacacac--cgaaggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagta 173  Q
     ||||||    ||||| |||| |||||||| || || |||||||||||||||| || |||||||||||||    
T  17027125 cacacacatataaggccttttaaaggttataacatgattgaggttaaggtgggatacatttgagaaagta 17027056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 22754641 - 22754483
Alignment:
Q  11 tggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatca----cca 105  Q
    ||||||| ||||||| ||||||| |||| ||||||||||||||||| |||| ||||||||| ||||||||| || |||||||||| || ||||     ||    
T  22754641 tggtcaaagcatttgccacactccagtcgtcatgtgattgtaccttgctataagattgaagaaattctaaacaggcattcaaggtatacatcatttcaca 22754542  T
Q  106 tacacaccgaaggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttg 165  Q
     ||| || || | || |||||||||||| |||||| ||||||||||||||| || |||||    
T  22754541 cacatacagaggaca-tttcaaggttataacgtggctgaggttaaggtgggataaatttg 22754483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 11274779 - 11274871
Alignment:
Q  11 tggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatca 102  Q
    |||||||||| |||||||||||| |||  |||||||||| ||||||||||||| |||||||| |||| ||| | ||||||||||| |||||||    
T  11274779 tggtcaaggcgtttgtcacactctagttgtcatgtgattttaccttactatgaaattgaagcgattccaaacaaacattcaaggtatatatca 11274871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 273
Target Start/End: Complemental strand, 41099838 - 41099745
Alignment:
Q  180 cataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg 273  Q
    ||||||||||||||||||||||||| |||||| |||| |||||  |||||| |||||||  ||| ||| | | |||||| ||||||||||||||    
T  41099838 cataccccaaattttgaccacttttatctatttttacacatttcgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcgg 41099745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 19331247 - 19331160
Alignment:
Q  19 gcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcacca 105  Q
    ||||||||||||||| || | |||||||||| |||||| || |||||||||||||||| || | ||||||||||| |  |||||||||    
T  19331247 gcatttgtcacactccagccgtcatgtgattctaccttgctttgagattgaagcaattatatagagacattcaagatacatatcacca 19331160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 23028053 - 23028007
Alignment:
Q  256 tttcagacgaaatttcggtagagaggatactttgaagtaactcattt 302  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||||    
T  23028053 tttcagacgaaatttcggcagagaggttactttgaagtacctcattt 23028007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 23037923 - 23037969
Alignment:
Q  255 gtttcagacgaaatttcggtagagaggatactttgaagtaactcatt 301  Q
    ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  23037923 gtttcagacgaaatttcggcagagaggttactttgaagtacctcatt 23037969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 21929236 - 21929285
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttatt 226  Q
    ||||||||||||||||||||| | |||||||  || ||||||||||||||    
T  21929236 tgtcataccccaaattttgacaatttttctcgctttttacccattttatt 21929285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 21988673 - 21988620
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  21988673 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 21988620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 21997317 - 21997264
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  21997317 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 21997264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 23606421 - 23606368
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23606421 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23606368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 23635076 - 23635129
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23635076 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23635129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 23829075 - 23829022
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23829075 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23829022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 23837816 - 23837763
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23837816 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23837763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 31550511 - 31550458
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| ||||| |||||||||||||| |||||    
T  31550511 ttttaatcatttcagacaaaatttcggcagagatgatactttgaagtacctcat 31550458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 21852635 - 21852579
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 303  Q
    |||| ||| ||||| |||||||||||| || |||| |||||||||||| ||||||||    
T  21852635 ttttaatcatttcaaacgaaatttcggcagggaggttactttgaagtacctcatttt 21852579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 21869159 - 21869103
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 303  Q
    |||| ||| ||||| |||||||||||| || |||| |||||||||||| ||||||||    
T  21869159 ttttaatcatttcaaacgaaatttcggcagggaggttactttgaagtacctcatttt 21869103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 23125370 - 23125454
Alignment:
Q  11 tggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggt 94  Q
    ||||||||| | ||| ||||||| |||  |||||||||||||| || || |||||||||| |||||||||| | ||| |||||||    
T  23125370 tggtcaaggaacttgccacactccagttgtcatgtgattgtactttgctgtgagattgaaacaattctaaacatacactcaaggt 23125454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 177 - 366
Target Start/End: Original strand, 4390 - 4580
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||  ||    
T  4390 tgtcataccccaaattttgacattttttctctattcttacccattttattcatatttttaaagtcggtaattttcatcgtttcagacgaaatttcgacag 4489  T
Q  277 agaggatactttgaagtaactca-ttttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatc 366  Q
    ||||| |||||||||||| |||| |||||||||| |||| |||| || ||| ||||| ||||||||||||||||||||||| || ||||||    
T  4490 agaggttactttgaagtacctcatttttttattccgagtcgggccctcttctctctttattttctttttatttcagtatttaatttccatc 4580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 177 - 367
Target Start/End: Original strand, 33035 - 33225
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |     
T  33035 tgtcataccccaaattttgaccacttttctctattcttacccattttatacgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaa 33134  T
Q  277 agaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    ||||| |||||| ||||| |||||||||||||| |||| || | || |||  |||| ||||||| ||||||||| | ||| || |||||||    
T  33135 agaggttactttaaagtacctcattttttattccgagtcggaccctcttctttctttattttctctttatttcattgtttaatttccatct 33225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 205 - 367
Target Start/End: Original strand, 35037884 - 35038046
Alignment:
Q  205 ctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| || |||||||||    
T  35037884 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgatagagaggttactttgaaatacctcattttt 35037983  T
Q  305 tattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    ||||| ||||  ||| || ||||||||| ||||||||||||||||||||||| || |||||||    
T  35037984 tattccgagtcaggccctcttccctctttattttctttttatttcagtatttaatttccatct 35038046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 15944623 - 15944485
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  15944623 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 15944524  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  15944523 aggaggttactttgaagtacctcatttttgattccgagt 15944485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 35138592 - 35138730
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  35138592 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 35138691  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  35138692 aggaggttactttgaagtacctcatttttgattccgagt 35138730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 35146928 - 35147066
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  35146928 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 35147027  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  35147028 aggaggttactttgaagtacctcatttttgattccgagt 35147066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 41233910 - 41233772
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  41233910 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 41233811  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  41233810 aggaggttactttgaagtacctcatttttgattccgagt 41233772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 14582925 - 14583062
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  14582925 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 14583024  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
     |||| |||||||||||| ||||||||| |||| ||||    
T  14583025 ggaggttactttgaagtacctcatttttgattccgagt 14583062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 15953137 - 15953000
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  15953137 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 15953038  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
     |||| |||||||||||| ||||||||| |||| ||||    
T  15953037 ggaggttactttgaagtacctcatttttgattccgagt 15953000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 38168422 - 38168285
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  38168422 tgtcatactccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 38168323  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
     |||| |||||||||||| ||||||||| |||| ||||    
T  38168322 ggaggttactttgaagtacctcatttttgattccgagt 38168285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 20621517 - 20621655
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||  |    
T  20621517 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtgtttttgaagtcgggaattttcgtcgtttcagacaaaatttcgaca 20621616  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
     ||| | |||||||||||| |||||||||||||| ||||    
T  20621617 aagatgttactttgaagtacctcattttttattctgagt 20621655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 42565995 - 42565857
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |    
T  42565995 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggca 42565896  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
     ||||| |||||||||||| |||||||||||||| ||||    
T  42565895 aagaggttactttgaagtacctcattttttattccgagt 42565857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 42574618 - 42574481
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |     
T  42574618 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 42574519  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  42574518 agaggttactttgaagtacctcattttttattccgagt 42574481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 17687463 - 17687361
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  17687463 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 17687364  T
Q  277 aga 279  Q
    |||    
T  17687363 aga 17687361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 177 - 305
Target Start/End: Complemental strand, 20372378 - 20372251
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |     
T  20372378 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgaca- 20372280  T
Q  277 agaggatactttgaagtaactcatttttt 305  Q
    | ||| |||||||||||| ||||||||||    
T  20372279 aaaggttactttgaagtacctcatttttt 20372251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 25483601 - 25483712
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||  ||    
T  25483601 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25483700  T
Q  277 agaggatacttt 288  Q
    ||||| ||||||    
T  25483701 agaggttacttt 25483712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 25491207 - 25491318
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||  ||    
T  25491207 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25491306  T
Q  277 agaggatacttt 288  Q
    ||||| ||||||    
T  25491307 agaggttacttt 25491318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 177 - 272
Target Start/End: Original strand, 44372705 - 44372800
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcg 272  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  44372705 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcg 44372800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 177 - 272
Target Start/End: Original strand, 44388616 - 44388711
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcg 272  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  44388616 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcg 44388711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 177 - 302
Target Start/End: Original strand, 35303737 - 35303862
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||| | ||||||||  | |||||| |||||||| |||||| |||| |  ||| |||| ||||||||||||||||||||| ||    
T  35303737 tgtcataccccaaattttgactatttttctctgattttaccccttttattcttattttaaaagccaagaaatttcgtcgtttcagacgaaatttcggcag 35303836  T
Q  277 agaggatactttgaagtaactcattt 302  Q
    ||||| || ||||||||| |||||||    
T  35303837 agaggttaatttgaagtacctcattt 35303862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 27606709 - 27606606
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||| |||||||||||| ||||||||||||| ||| | |||||||||||| |||||||| ||||||||||  |||| |||||||||||||||| ||    
T  27606709 tgtcatactccaaattttgactacttttctctatttttatcaattttattcgtacttttaaagacgggaatttt-gtcgtctcagacgaaatttcggcag 27606611  T
Q  277 agagg 281  Q
    |||||    
T  27606610 agagg 27606606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 24285696 - 24285798
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||||||||| |||| |||| |||||| |||||| |||||||   || ||||| | |||||| |||||||||||||||||    
T  24285696 tgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaactggaaatttccgtcgtttaagacgaaatttcggtag 24285795  T
Q  277 aga 279  Q
    |||    
T  24285796 aga 24285798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 42249520 - 42249418
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||  |||||| ||||||| |||  ||| | | |||||| |||||||||||||| ||    
T  42249520 tgtcataccccaaattttgaccacttttctctatttttacacatttcgttcgtacttttaaaatcgaaaatgtccgtcgttttagacgaaatttcggcag 42249421  T
Q  277 aga 279  Q
    |||    
T  42249420 aga 42249418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 26903396 - 26903296
Alignment:
Q  179 tcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagag 278  Q
    |||||||| |||||||||||||||||||||||| |||| |||||| |||||| |||||||  ||  ||| | |||||||| |||||||||||||| ||||    
T  26903396 tcataccctaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccgaaaatgtccatcgttttagacgaaatttcggcagag 26903297  T
Q  279 a 279  Q
    |    
T  26903296 a 26903296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 34070669 - 34070567
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||| |||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | | |||||| |||| ||||||||| ||    
T  34070669 tgtcataccccaaattttgatcacttttctctatttttacacattttgttcgtacttttaaaaccggtaatgtccgtcgttttagacaaaatttcggcag 34070570  T
Q  277 aga 279  Q
    |||    
T  34070569 aga 34070567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 279
Target Start/End: Original strand, 24292371 - 24292475
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcg-ggaattttcatcgtttcagacgaaatttcggt 274  Q
    ||||||||||||||||||||||||||||||| |||| |||| |||||| |||||| |||||||  ||   ||| | | |||||| |||||||||||||||    
T  24292371 ctgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaaccgaaaaatgtccgtcgtttaagacgaaatttcggt 24292470  T
Q  275 agaga 279  Q
    |||||    
T  24292471 agaga 24292475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 22389179 - 22389265
Alignment:
Q  8 ggctggtcaaggcatttgtcacactcagtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggt 94  Q
    |||||||||||| ||||| ||||| ||||| |||||||| |||||||| |||||| ||||||| |||| |||| | |||||||||||    
T  22389179 ggctggtcaaggtatttgccacacccagtcgtcatgtgactgtaccttgctatgaaattgaagtaattataaacaaacattcaaggt 22389265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 39730178 - 39730111
Alignment:
Q  9 gctggtcaaggcatttgtcacactca-gtcatcatgtgattgtaccttactatgagattgaagcaatt 75  Q
    ||||||||||| ||||| |||||||| |||||| ||||||||||| ||||||||||||||| ||||||    
T  39730178 gctggtcaaggtatttgccacactcaagtcatcgtgtgattgtacattactatgagattgatgcaatt 39730111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 18989389 - 18989312
Alignment:
Q  226 tcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 303  Q
    |||| ||||||||| ||||||||||  |||  |||||||||||| ||||||||||| |||||| ||||| ||||||||    
T  18989389 tcgtctttttaaagccgggaatttttgtcgcatcagacgaaattacggtagagaggttactttcaagtacctcatttt 18989312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 21322875 - 21322814
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 238  Q
    |||||||||||||||||||||||||||| ||||||  ||||  ||||||||||||||||||||    
T  21322875 tgtcataccccaaattttgaccactttt-tctatttgtaccaaattttattcgtatttttaaa 21322814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 20917520 - 20917570
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattc 227  Q
    |||||||| | |||||||||||||||||||||||| |||  ||||||||||    
T  20917520 tgtcatactctaaattttgaccacttttctctatttttattcattttattc 20917570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 27683434 - 27683381
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  27683434 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 27683381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 176 - 356
Target Start/End: Complemental strand, 995 - 815
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||| |    
T  995 ctgtcataccccaaattttgaccagctttctctattcttacccattttattcgtatttttaaagctgggaattttcgtcgtttcagacgaaatttcggca 896  T
Q  276 gagaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtattt 356  Q
    || ||| ||||||||| || ||||||||| |||| |||| |||| || ||| ||||| ||||||||||||||| |||||||    
T  895 gaaaggttactttgaaatacctcatttttgattccgagtcgggccctcttctctctttattttctttttattttagtattt 815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 177 - 305
Target Start/End: Original strand, 15813 - 15941
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||    
T  15813 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 15912  T
Q  277 agaggatactttgaagtaactcatttttt 305  Q
    ||||| |||||||||||| ||||||||||    
T  15913 agaggttactttgaagtacctcatttttt 15941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 177 - 356
Target Start/End: Complemental strand, 32137819 - 32137640
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |     
T  32137819 tgtcttaccccaaattttgatcacttttctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 32137720  T
Q  277 agaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtattt 356  Q
    | | | |||||||||||| |||||||||||||| |||| |||| || ||| ||||| ||||||| |||||||||||||||    
T  32137719 ataagttactttgaagtacctcattttttattccgagtcgggccctcttctctctttattttctctttatttcagtattt 32137640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 177 - 367
Target Start/End: Complemental strand, 41746758 - 41746567
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg-ta 275  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||  |    
T  41746758 tgtcatatcccaaattttgaccacttttatctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcaa 41746659  T
Q  276 gagaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
     ||||| |||||||||||| |||||||||||||| |||| |||| || ||| ||||| ||||||||||||||| ||| ||| || |||||||    
T  41746658 aagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctttattttctttttatttgagtgtttaatttccatct 41746567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 3432956 - 3432818
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |    
T  3432956 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 3432857  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
     ||||| |||||||||||| |||||||||||||| ||||    
T  3432856 aagaggttactttgaagtacctcattttttattccgagt 3432818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 31548522 - 31548660
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  31548522 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 31548621  T
Q  276 gagaggatactttgaagtaactcattttttattcggagt 314  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  31548622 aggaggttactttgaagtacctcatttttgattccgagt 31548660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 31539954 - 31540091
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  31539954 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 31540053  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
     |||| |||||||||||| ||||||||| |||| ||||    
T  31540054 ggaggttactttgaagtacctcatttttgattccgagt 31540091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 35104129 - 35103992
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| || |     
T  35104129 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagttgggaattttcgtcgtttcagacgaaattttggcaa 35104030  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
     |||| |||||||||||| ||||||||| |||| ||||    
T  35104029 ggaggttactttgaagtacctcatttttgattccgagt 35103992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 302
Target Start/End: Complemental strand, 29221554 - 29221429
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||    |||||||||||||||||| |    
T  29221554 ctgtcataccccaaattttgactacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgctatttcagacgaaatttcggca 29221455  T
Q  276 gagaggatactttgaagtaactcattt 302  Q
    |||||| || |||||| || |||||||    
T  29221454 gagagg-tattttgaaatacctcattt 29221429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 23223220 - 23223131
Alignment:
Q  14 tcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatca 102  Q
    |||||||||||| ||||||| | || ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||    
T  23223220 tcaaggcatttgccacactccaatcgtcatgtgattgtaccttgctatgagattaaagcaattctaaatagacattcaaggtatatatca 23223131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 177 - 302
Target Start/End: Complemental strand, 44320257 - 44320132
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||||||| || | || |||   || ||||||||||||||||||| | ||    
T  44320257 tgtcataccccaaattttgaccacttttctcgctttttacccattttattcgtattttaaacgccgagaaggatcgtcgtttcagacgaaatttcagcag 44320158  T
Q  277 agaggatactttgaagtaactcattt 302  Q
     |||| |||||  ||||| |||||||    
T  44320157 ggaggttacttgaaagtacctcattt 44320132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 21498963 - 21498861
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||  |||||| |||||||  ||| ||| | | |||||| |||||||||||||| ||    
T  21498963 tgtcataccccaaattttgaccacttttctctatttttacacatttcgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggcag 21498864  T
Q  277 aga 279  Q
    |||    
T  21498863 aga 21498861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 51058450 - 51058359
Alignment:
Q  179 tcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttc 271  Q
    |||||||||||||||||| ||||||||| | |||| |  ||||||||||||||||||||||  |||||||||| | |||||| ||||||||||    
T  51058450 tcataccccaaattttgatcacttttctttgttct-attcattttattcgtatttttaaagctgggaattttcgttgtttcaaacgaaatttc 51058359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 28457556 - 28457673
Alignment:
Q  179 tcataccccaaattttgaccacttttctc-tattcttacccatttta-ttcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||||| | || |||||||||||| || ||||||| || | |  |||   || ||||||||||||||||||||  ||    
T  28457556 tcataccccaaattttgaccacttttctcgtttttttacccattttattttgtattttaaacgccaagaaggatcgtcgtttcagacgaaatttcgacag 28457655  T
Q  277 agaggatactttgaagta 294  Q
    ||||| ||||||||||||    
T  28457656 agaggttactttgaagta 28457673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 367
Target Start/End: Original strand, 13450142 - 13450213
Alignment:
Q  296 ctcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    ||||||||| |||| |||| ||||||| ||| ||||| ||||||||||||||||||||||| || |||||||    
T  13450142 ctcatttttgattccgagtcgggctctcttctctctttattttctttttatttcagtatttaatttccatct 13450213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 8241487 - 8241438
Alignment:
Q  253 tcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattt 302  Q
    ||||||||||||||||||||||||||||| |||||| ||||| |||||||    
T  8241487 tcgtttcagacgaaatttcggtagagaggttactttaaagtacctcattt 8241438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 31313097 - 31313020
Alignment:
Q  17 aggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaagg 93  Q
    ||||||||| ||||||| | || | |||| |||||||||| |||||||||| || |||||||||||||||| ||||||    
T  31313097 aggcatttgccacactccaatcgtgatgttattgtaccttgctatgagattaaaccaattctaaatagacaatcaagg 31313020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 8579341 - 8579413
Alignment:
Q  228 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    ||||||| ||||||| |  |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  8579341 gtattttaaaagtcgcgttttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 8579413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 27754837 - 27754786
Alignment:
Q  41 atgtgattgtaccttactatgagattgaagcaattctaaatagacattcaag 92  Q
    |||||||||||| ||||||||| |||||| |||||||||| ||| |||||||    
T  27754837 atgtgattgtacgttactatgatattgaaacaattctaaacagaaattcaag 27754786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 20314092 - 20314058
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctatt 211  Q
    |||||||||||||||||||||||||||| ||||||    
T  20314092 tgtcataccccaaattttgaccacttttttctatt 20314058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 31313107 - 31313161
Alignment:
Q  41 atgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtc 95  Q
    |||| |||||||||   ||||||||| ||||||||||||||||||| ||||||||    
T  31313107 atgttattgtacctggttatgagattaaagcaattctaaatagacaatcaaggtc 31313161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 12465751 - 12465698
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  12465751 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 12465698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 52100017 - 52100078
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaa 238  Q
    ||||||| || |||||||||||| |||||||| || |||| |||||| |||||| |||||||    
T  52100017 tgtcatatcctaaattttgaccatttttctctgtttttacacattttgttcgtacttttaaa 52100078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 14397342 - 14397286
Alignment:
Q  10 ctggtcaaggcatttgtcacact-cagtcatcatgtgattgtaccttactatgagat 65  Q
    |||||||||| ||||| |||||| | ||| ||||||||||||||||| |||||||||    
T  14397342 ctggtcaaggtatttgccacactaccgtcgtcatgtgattgtaccttgctatgagat 14397286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 149 - 12
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |     
T  149 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 50  T
Q  277 agaggatactttgaagtaactcattttttattcggagt 314  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  49 agaggttactttgaagtacctcattttttattccgagt 12  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 268
Target Start/End: Complemental strand, 40898 - 40807
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaat 268  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  40898 tgtcataccccaaattttgaccacttttctctattcttatccattttattcgtatttttaaagtcgagcattttcatcgtttcagacgaaat 40807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 177 - 303
Target Start/End: Complemental strand, 7255 - 7129
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||| ||||||||||||||||||||| || |||||||||||||| ||| |||||||| || |||||||| | ||||||||||||||||||| ||    
T  7255 tgtcataccctaaattttgaccacttttctctgtttttacccattttatttgtacttttaaagccgagaattttcgttgtttcagacgaaatttcgggag 7156  T
Q  277 agaggatactttgaagtaactcatttt 303  Q
      ||| |||||||||||| ||||||||    
T  7155 gaaggttactttgaagtacctcatttt 7129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 177 - 302
Target Start/End: Original strand, 139 - 264
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| | | ||||||| |  |||||||||||||||||        
T  139 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcgacga 238  T
Q  277 agaggatactttgaagtaactcattt 302  Q
    ||||  |||||||||||| |||||||    
T  239 agagtttactttgaagtacctcattt 264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 177 - 302
Target Start/End: Complemental strand, 20547 - 20422
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 276  Q
    |||||||||||||||||||||||||||||| |  | |||| |||||| |||||| |||||||| || |||||||| | ||||||||||||||||||| ||    
T  20547 tgtcataccccaaattttgaccacttttctatggttttacacattttgttcgtacttttaaagccgagaattttcgttgtttcagacgaaatttcggcag 20448  T
Q  277 agaggatactttgaagtaactcattt 302  Q
    ||||| ||||||| |||| |||||||    
T  20447 agaggttactttggagtacctcattt 20422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 438 - 335
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    ||||||||||||||||||||||||||||||| |||| |||| |||||| |||||| |||||||  ||| ||| | |||||||| |||||||||||||| |    
T  438 ctgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaaccggaaatgtccatcgttttagacgaaatttcggca 339  T
Q  276 gaga 279  Q
    ||||    
T  338 gaga 335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 438 - 345
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaattt 270  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | |||||||| |||||||||||    
T  438 tgtcataccccaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccatcgttttagacgaaattt 345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 7694 - 7622
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||||||||| |||||||    
T  7694 tgtcataccccaaattttgaccacttttctctattcttacccatttttttgcattttttaaagtcaggaattt 7622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 367
Target Start/End: Complemental strand, 7621 - 7530
Alignment:
Q  276 gagaggatactttgaagtaactcattttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    |||||| |||||||||||| ||||||||||||||  ||| |  |||| ||| ||||| ||||||| ||||||||| ||| | || |||||||    
T  7621 gagaggttactttgaagtacctcattttttattcctagtcgaactctcttctctctttattttctctttatttcattatctaatttccatct 7530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 192526 - 192622
Alignment:
Q  175 gctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttc 271  Q
    ||||||||||||||||||||||||||||||||||||| ||||  ||||| |||||| |||||||  ||| ||| | | |||||| ||||||||||||    
T  192526 gctgtcataccccaaattttgaccacttttctctatttttacagattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttc 192622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 65604 - 65501
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    ||||||||||||||||||||  |||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | | |||||| |||||||||||||| |    
T  65604 ctgtcataccccaaattttgtacacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggca 65505  T
Q  276 gaga 279  Q
    ||||    
T  65504 gaga 65501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 81852 - 81749
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | | |||||| ||||||||||| || |    
T  81852 ctgtcataccctaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaattttggca 81753  T
Q  276 gaga 279  Q
    ||||    
T  81752 gaga 81749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 279
Target Start/End: Original strand, 415 - 518
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 275  Q
    ||||||||||| ||||||||||||||||||| || | |||| |||||| |||||| |||||||  ||| ||| | | |||||| |||||||||||||| |    
T  415 ctgtcataccctaaattttgaccacttttctttaattttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggca 514  T
Q  276 gaga 279  Q
    ||||    
T  515 gaga 518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 15837 - 15760
Alignment:
Q  226 tcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 303  Q
    |||| ||||||||| | ||||||||| ||| ||||||||||||| ||||||| ||| |||||||||||| ||||||||    
T  15837 tcgtctttttaaagccaggaattttcgtcgcttcagacgaaattacggtagataggttactttgaagtacctcatttt 15760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1487 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 801 - 762
Alignment:
Q  184 ccccaaattttgaccacttttctctattcttacccatttt 223  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  801 ccccaaattttgaccacttttctctattcttacccatttt 762  T

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Target: scaffold0514 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 10974 - 10912
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 238  Q
    ||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||    
T  10974 ctgtcataccccaaattttgaccactttt-tctatttttaccaaattttattcgtatttttaaa 10912  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 356
Target Start/End: Complemental strand, 65701 - 65589
Alignment:
Q  245 aattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt-attcggagttgggctctgttccctcttcattttctttt 343  Q
    ||||||| | ||||| ||||||||||||  | ||| | |||||||||||| |||||||||| |||| |||| || | || ||| ||||| ||||| ||||    
T  65701 aattttcgttgtttcggacgaaatttcgacaaagatgttactttgaagtacctcatttttttattccgagtcggacccttttctctctttattttatttt 65602  T
Q  344 tatttcagtattt 356  Q
    |||||||||||||    
T  65601 tatttcagtattt 65589  T

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Target: scaffold0027; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 65744 - 65710
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctat 210  Q
    ||||||||||| |||||||||||||||||||||||    
T  65744 ctgtcataccctaaattttgaccacttttctctat 65710  T

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Target: scaffold0990 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 3127 - 3075
Alignment:
Q  60 tgagattgaagcaattctaaatagacattcaaggtctatatcaccatacacac 112  Q
    |||||||||||||||| |||||||||||| ||||| ||||||| || ||||||    
T  3127 tgagattgaagcaattataaatagacattgaaggtatatatcatcacacacac 3075  T

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Target: scaffold0315 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 10651 - 10595
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 303  Q
    ||||| ||| ||||||||||||||||| | ||||| |||||||||||| ||||||||    
T  10651 ttttcgtcgcttcagacgaaatttcggcaaagaggttactttgaagtacctcatttt 10595  T

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Target: scaffold0323 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 17669 - 17602
Alignment:
Q  300 ttttttattcggagttgggctctgttccctcttcattttctttttatttcagtatttgatgtccatct 367  Q
    |||||||||| |||| |||| || ||| ||||| ||||||||||||||||| ||||| || |||||||    
T  17669 ttttttattccgagtcgggccctcttctctctttattttctttttatttcattatttaatttccatct 17602  T

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Target: scaffold0484 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 11507 - 11457
Alignment:
Q  177 tgtcataccccaaattttgaccacttttct-ctattcttacccattttatt 226  Q
    |||| |||||||||||||||||| |||| | ||||||||||||||||||||    
T  11507 tgtcgtaccccaaattttgaccattttttttctattcttacccattttatt 11457  T

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Target: scaffold0455 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 6109 - 6056
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  6109 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 6056  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 59736 - 59789
Alignment:
Q  247 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 300  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  59736 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 59789  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 303
Target Start/End: Original strand, 61288 - 61418
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctcta-ttcttaccca-ttttattcgta---tttttaaagtcgggaattttcatcgtttcagacgaaatttc 271  Q
    |||||||||||||||||||||||| |||||||| || |||| || |||||||||||   ||||| ||| |   |||||||||  ||||| || |||||||    
T  61288 tgtcataccccaaattttgaccac-tttctctattttttactcatttttattcgtatttttttttaagccaaaaattttcattatttcaaacaaaatttc 61386  T
Q  272 ggtagagaggatactttgaagtaactcatttt 303  Q
     | | ||||| |||||||||||| ||||||||    
T  61387 agcatagaggttactttgaagtacctcatttt 61418  T

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