View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_442 (Length: 223)
Name: NF10140A_low_442
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_442 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 2337190 - 2337378
Alignment:
| Q |
19 |
acatcaaaatctacaaaattggagagaaggcacgggaatggggagatatgacatactcttggatatacttcttagaatttgttgggtcaggaatccaatg |
118 |
Q |
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| T |
2337190 |
acatcaaaatctacaaaactggagagaaggcacgggaatgaggagatatgacatactcttggatatacttcttaggatttgttgggtcaggaatccaatg |
2337289 |
T |
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| Q |
119 |
aatctcactcatgtttggtgtctcaacgtaggacatagtaaattcccctatcttctcaagctttcctctcttacctgcccttagtataa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2337290 |
aatctcactcatgtttggtgtctcaacgtaggacatagtaaattctcctatcttctcaagctttcctctcttacctgcccttagaataa |
2337378 |
T |
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