View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_446 (Length: 223)
Name: NF10140A_low_446
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_446 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 32 - 212
Target Start/End: Complemental strand, 43561339 - 43561159
Alignment:
| Q |
32 |
cgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccttttcttccgcttttgtgcatactggtatctttataaattgttggagctattagcgc |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43561339 |
cgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccatttcttctgcttttgtgcatactggtatctttataaattgttggagctattagctc |
43561240 |
T |
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| Q |
132 |
acaacactccattctcggttgttgatgaaagtctagcatttgagatttcacaattgattggatatctcaaatggttttttg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
43561239 |
acaacactccattctcggttgttgatgaaagtctagcatttgagattttacaattgattggaaatctcaaatggttttttg |
43561159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 17729818 - 17730001
Alignment:
| Q |
29 |
aggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccttttcttccgcttttgtgcatactggtatctttataaattgttggagctattag |
128 |
Q |
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|||||| |||||||||||||||| |||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17729818 |
aggcgttttcgttgtggatttgttttgcgaaatgattgtttaacccgtttcttctgtttttgtgcatactggtatctttataaattgctggagctattag |
17729917 |
T |
|
| Q |
129 |
cgcacaacactccattctcggttgttgatgaaagtctagcatttgagatttcacaattgattggatatctcaaatggttttttg |
212 |
Q |
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| T |
17729918 |
ctcacaatactccattctcggttgttgatgaaagcctagcatttgagattttacaattgattggaaatctcaaatgattttttg |
17730001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 43569419 - 43569380
Alignment:
| Q |
173 |
gagatttcacaattgattggatatctcaaatggttttttg |
212 |
Q |
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| T |
43569419 |
gagattttacaattgattggaaatctcaaatggttttttg |
43569380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 1622473 - 1622290
Alignment:
| Q |
21 |
atcacgagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccttttcttccgcttttgtgcatactggtatctttataaattgttgga |
120 |
Q |
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||||||| | ||||||||||||||||||||||| |||||||||| ||||||| ||||||| | |||| |||||| ||||||||||||||||||||| | |
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| T |
1622473 |
atcacgacaagcgtcttcgttgtggatttgtcta-caaaatgattacttaacccgtttcttc-gattttttgcatattggtatctttataaattgttgca |
1622376 |
T |
|
| Q |
121 |
gctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagatttcacaattgattggatatctcaaatggt |
206 |
Q |
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||||||| ||||| ||||||||||||| |||| ||||| |||||| |||||||||| ||||||||||||| |||||||||||| |
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| T |
1622375 |
attattagctcacaatactccattctcggatgttattgaaaatctagcgtttgagattttacaattgattggaaatctcaaatggt |
1622290 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 1602019 - 1601831
Alignment:
| Q |
21 |
atcacgagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccttttcttccgcttttgtgcatactggtatctttataaattgttgga |
120 |
Q |
| |
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||||||| |||| ||||| |||||||||||||| |||||||||| ||||| ||||||| | |||| |||||| |||||||||||||||||| | || |
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| T |
1602019 |
atcacgacaggcatcttcattgtggatttgtcta-caaaatgattacttaacttgtttcttc-gattttctgcatattggtatctttataaattgcttga |
1601922 |
T |
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| Q |
121 |
gctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagatttcacaattgattggatatctcaaatggtttttt |
211 |
Q |
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||||||||| ||| | |||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||| |||||||||||| |||| |
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| T |
1601921 |
gctattagctcacgatactccattctcggttgttattgaaaatctagcgtttgagattttacaattgattggaaatctcaaatggtgtttt |
1601831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 1601168 - 1601349
Alignment:
| Q |
31 |
gcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccttttcttccgcttttgtgcatactggtatctttataaattgttggagctattagcg |
130 |
Q |
| |
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|||| ||| ||||||||||||||||| ||||||||||||||||| ||||||| | |||| ||||||| ||||||| |||||||| ||||||||||||| |
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| T |
1601168 |
gcgtattcattgtggatttgtcttgcgaaatgattgtttaacccgtttcttctgtttttctgcatacaggtatctctataaatttctggagctattagct |
1601267 |
T |
|
| Q |
131 |
cacaacactccattctcggttgttgatgaaagtctagcatttgagatttcacaattgattggatatctcaaatggttttttg |
212 |
Q |
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||| | |||||||| || | | || ||||| | ||| |||||||||| |||||||| |||| |||||||| ||| ||||| |
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| T |
1601268 |
cacgatactccattatcaggttttattgaaaatatagagtttgagattttacaattgaatggaaatctcaaacggtgttttg |
1601349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 1621651 - 1621827
Alignment:
| Q |
31 |
gcgtcttcgttgtggatttgtcttgcaaaatgattgtttaaccc-ttttcttccgcttttgtgcatactggtatctttataaattgttggagctattagc |
129 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||||||| |||| || | |||| ||||||| |||||| |||||||| | ||||||||||| |
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| T |
1621651 |
gcgtcttcattgtggatttgtcttgcggaatgattgtttaacccatttttttttgtttttctgcatacaagtatctctataaatt-tctgagctattagc |
1621749 |
T |
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| Q |
130 |
gcacaacactccattctcggttgttgatgaaagtctagcatttgagatttcacaattgattggatatctcaaatggttttttg |
212 |
Q |
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||||| || |||| |||||| ||||| |||| |||||||||| ||||||||||||| |||||| ||||| ||||| |
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| T |
1621750 |
tcacaatac-----tctcagttgttattgaaaatctaaagtttgagattttacaattgattggaaatctcagatggtgttttg |
1621827 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 29543911 - 29543754
Alignment:
| Q |
31 |
gcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccttttcttccgcttttgtgcatactggtatctttataaattgttggagctattagcg |
130 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||| | || | ||||| | || ||||| |||||| |||||||||| | |
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| T |
29543911 |
gcgtcttcgttgtggatttgtcttgtggaatgattgtttaacatatttctttagtttgtcagcatattattaccttta--aattgtaggagctattacct |
29543814 |
T |
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| Q |
131 |
cacaacactccattctcggttgttgatgaaagtctagcatttgagatttcacaattgatt |
190 |
Q |
| |
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|| || |||||||||| ||||||||||||| |||| | |||||||||| ||| |||||| |
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| T |
29543813 |
cataatactccattctatgttgttgatgaaaatctatcttttgagattttacatttgatt |
29543754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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