View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_45 (Length: 400)
Name: NF10140A_low_45
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 397
Target Start/End: Complemental strand, 41447309 - 41446923
Alignment:
| Q |
11 |
tgagacctgaacaagaagacagacaagtctaaagaggcagtgtcaagaatacttttcatctctcttgagagaagaatacgcaaatgcctgaatatctcgt |
110 |
Q |
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| T |
41447309 |
tgagacctgaacaagatgacagacaagtctaaagaggcagtgtcaagaatacttttcatctctcttgagagaagaatacgcaaatgcctgaatatctcgt |
41447210 |
T |
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| Q |
111 |
ctccatgtgatcttgtcacttttatatctatcaactaataaaattgtcaatcagtcatcatataaatttatatacaccttgtactttcctacttatttgc |
210 |
Q |
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| T |
41447209 |
ctgcatgtgatcttgtcacttttatatctatcaactaataaaattgtcaatcagtcatcatataaatttatatacaccttgtactttcctacttatttgc |
41447110 |
T |
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| Q |
211 |
aaggaagacttggacagagaaagagtcaggagaaaattagtagcctagaaaactttatgtacaacattagttaagttaaaatcaattaggaatgtcgtag |
310 |
Q |
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| T |
41447109 |
aaggaagacttagacagagaaagagtcaggagaaaattagtagcctagataactttatgtacaacattagttaagttaaaatcaattaggaatgtcgtag |
41447010 |
T |
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| Q |
311 |
gggttagaaatttttggcatcagaattgacttatatgcaacaactttgtcaaatatagaaattattaagacttataatatattagtt |
397 |
Q |
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| T |
41447009 |
gggttagaaatttttggcatcagaattgacttatatgcaacaactttgtcaaatatagaaattattaagacttatgatatattagtt |
41446923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 28 - 397
Target Start/End: Complemental strand, 41434557 - 41434185
Alignment:
| Q |
28 |
gacagacaagtctaaagaggcagtgtcaagaatacttttcatct--ctcttgaga-gaagaatacgcaaatgcctgaatatctcgtctccatgtgatctt |
124 |
Q |
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| T |
41434557 |
gacagacaagtctaaaggggcagagtcaagaatacttcacgtctttctctcgagaagaagaatacgttaaagcctgaatatttcatctccatgtgatctt |
41434458 |
T |
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| Q |
125 |
gtcacttttatatctatcaactaataaaattgtcaatcagtcatcatataaatttatatacaccttgtactttcctacttatttgcaaggaagacttgga |
224 |
Q |
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||||||| ||||||||||| |||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| || |
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| T |
41434457 |
gtcacttgtatatctatcagctaataaaattgccaatcagtcttcatataaatttatatatgccttgtactttcctacttatttgcaaggaaaactttga |
41434358 |
T |
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| Q |
225 |
cagagaaagagtcaggagaaaattagtagcctagaaaactttatgtacaacattagttaagttaaaatcaattaggaatgtcgtaggggttagaaatttt |
324 |
Q |
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| T |
41434357 |
cagagaaagagtcaagagaaaattagtagcctagataattttatgtacaccattagttaagttaaaatcaattaggagtgtcataggggttagaaatttt |
41434258 |
T |
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| Q |
325 |
tggcatcagaattgacttatatgcaacaactttgtcaaatatagaaattattaagacttataatatattagtt |
397 |
Q |
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| T |
41434257 |
tggcatcagaattgacttctatgcaacaactttgtcaaatatagaaattatgtagacttatgatatgttagtt |
41434185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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