View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_452 (Length: 220)
Name: NF10140A_low_452
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_452 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 3400754 - 3400903
Alignment:
| Q |
17 |
gacatcaatgagatatctagttttgccaaagtgtcctcgacaatttgcttcactagttcaccttcattacttgggtaataataacagttacaaagacaaa |
116 |
Q |
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| T |
3400754 |
gacaacaatgagatatctagttttgccaaagtgtcctcaacaatttgcttcactagttcaccttcattacttgggtaataataacagttacaaagacaaa |
3400853 |
T |
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| Q |
117 |
gaatgagcattaatcaatcatgaaataatctcaaaagaaagtacgcttta |
166 |
Q |
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| T |
3400854 |
gaatgagcattaatcaatcatgacataatctcaaaagaaattacgcttta |
3400903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 31173794 - 31173688
Alignment:
| Q |
17 |
gacatcaatgagatatctagttttgccaaagtgtcctcgacaatttgcttcactagttcaccttcattacttgggtaataataacagttacaaagacaaa |
116 |
Q |
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| T |
31173794 |
gacaacaatgagatatctagtattttcaaaatggcctcaacaatttgcttcgctagttcccctttattccttgggtaataat---agttacaaagacaaa |
31173698 |
T |
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| Q |
117 |
gaatgagcat |
126 |
Q |
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|||||||||| |
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| T |
31173697 |
gaatgagcat |
31173688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 3264715 - 3264785
Alignment:
| Q |
30 |
tatctagttttgccaaagtgtcctcgacaatttgcttcactagttcaccttcattacttgggtaataataa |
100 |
Q |
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| T |
3264715 |
tatctagtttttccaaaacgtccgccacaatttgctgcattagttcaccttcattccttgggtgataataa |
3264785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 20836405 - 20836263
Alignment:
| Q |
17 |
gacatcaatgagatatctagttttgccaaagtgtcctcgacaatttgcttcactagttcaccttcattacttgggtaataataa-------cagttacaa |
109 |
Q |
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|||| ||||||||||||||||||| |||| ||||||| |||||| ||| |||||||||||||||||| || |||||||||||| ||||||||| |
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| T |
20836405 |
gacaacaatgagatatctagttttctcaaaatgtcctcaacaattagctccactagttcaccttcattcctagggtaataataataataaacagttacaa |
20836306 |
T |
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| Q |
110 |
agacaaagaatgagcattaatcaatcatgaaataatctcaaaa |
152 |
Q |
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| T |
20836305 |
agacaaagaatgagcattaatcaatcatgacataatctcaaaa |
20836263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 20810050 - 20809916
Alignment:
| Q |
17 |
gacatcaatgagatatctagttttgccaaagtgtcctcgacaatttgcttcactagttcaccttcattacttgggtaataataa-------cagttacaa |
109 |
Q |
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|||| ||||||||||| |||||||| |||| ||| ||| ||||| ||||||||||||||||||||| || ||||||||||| ||||||||| |
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| T |
20810050 |
gacaacaatgagatatttagttttgtcaaaatgtactcaacaatacccttcactagttcaccttcattcctacggtaataataataataaacagttacaa |
20809951 |
T |
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| Q |
110 |
agacaaagaatgagcattaatcaatcatgaaataa |
144 |
Q |
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||||||| |||||||||||||||||||||| |||| |
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| T |
20809950 |
agacaaaaaatgagcattaatcaatcatgacataa |
20809916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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