View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_462 (Length: 219)
Name: NF10140A_low_462
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_462 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 28728871 - 28729000
Alignment:
| Q |
1 |
cagagatggagaaagaaaaatgtccaggaggaaatgtactatgaaatggattgtacttaaactagcatcttctataatcctaggatatctaattcacaca |
100 |
Q |
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| T |
28728871 |
cagagatggcgaaagaaaaatgaccaggaggaaatgtactatgaaatggattgtacttaaactagcctcttctataatcctagtatatctaattcacaca |
28728970 |
T |
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| Q |
101 |
cgtattttggccctgcagatgaaaaacaga |
130 |
Q |
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| T |
28728971 |
cgtattttggccctgcagacgaaaaacaga |
28729000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 28730008 - 28730053
Alignment:
| Q |
174 |
caaaagtcataagcctgtgaaaacagatacttccccaaagactaaa |
219 |
Q |
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| T |
28730008 |
caaaattcataagcctgtgaaaacagatacttccccaaagactaaa |
28730053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 28730058 - 28730092
Alignment:
| Q |
135 |
tcatacacaaattgtaagaaaccatgaattgatac |
169 |
Q |
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| T |
28730058 |
tcatacacaaattgtaagaaaccatgaattgatac |
28730092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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