View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_464 (Length: 218)

Name: NF10140A_low_464
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_464
NF10140A_low_464
[»] chr4 (3 HSPs)
chr4 (19-202)||(59305-59488)
chr4 (123-175)||(47970000-47970052)
chr4 (130-183)||(27987511-27987564)
[»] chr2 (4 HSPs)
chr2 (93-175)||(41538948-41539030)
chr2 (97-174)||(1968104-1968181)
chr2 (29-112)||(34337984-34338067)
chr2 (103-182)||(10677364-10677442)
[»] chr5 (3 HSPs)
chr5 (65-175)||(31682830-31682939)
chr5 (82-175)||(7553464-7553557)
chr5 (69-173)||(42930631-42930733)
[»] chr1 (1 HSPs)
chr1 (65-119)||(18186787-18186841)
[»] chr3 (1 HSPs)
chr3 (138-183)||(28455894-28455939)
[»] scaffold0432 (1 HSPs)
scaffold0432 (126-170)||(1765-1809)
[»] chr7 (1 HSPs)
chr7 (44-112)||(3119735-3119803)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 59488 - 59305
Alignment:
Q  19 aatatcctttgtgcgcaactgcggagactagtcccttcaaggtaactgagatctatttatgaggttgatcttttccaacaaatatttttccatatgcacc 118  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  59488 aatatcctttgtgcgcaactgcggagactaatcccttcaaggtaactgagatccatttatgaggttgatcttttccaacaaatatttttccatatgcacc 59389  T
Q  119 ggccagagatcgaaccctggaccaaatggttaagggactcaagtatctaccacttgttccacactttcctttaaaatttgatgt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  59388 ggccagagatcgaaccctggaccaaatggttaagggactcaagtatctaccacttgttccacactttcctttaaaatttgatgt 59305  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 47970052 - 47970000
Alignment:
Q  123 agagatcgaaccctggaccaaatggttaagggactcaagtatctaccacttgt 175  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||||||||||||    
T  47970052 agagatcgaactctggaccaaatggttgagggactcaactatctaccacttgt 47970000  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 27987511 - 27987564
Alignment:
Q  130 gaaccctggaccaaatggttaagggactcaagtatctaccacttgttccacact 183  Q
    |||| ||||| ||||||||||||  |||||| |||||||||||||| |||||||    
T  27987511 gaactctggaacaaatggttaagaaactcaactatctaccacttgtgccacact 27987564  T

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Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 41539030 - 41538948
Alignment:
Q  93 ccaacaaatatttttccatatgcaccggccagagatcgaaccctggaccaaatggttaagggactcaagtatctaccacttgt 175  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||| ||| |||||||||| |||||||    
T  41539030 ccaacaaatatttttccctacgcaccggccagggatcgaaccctggaccgaatggttaagagacccaagtatctagcacttgt 41538948  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 1968181 - 1968104
Alignment:
Q  97 caaatatttttccatatgcaccggccagagatcgaaccctggaccaaatggttaagggactcaagtatctaccacttg 174  Q
    ||||| |||||||||||||||||||||| ||||||||||  |||||||||||||| |||| |||||||||||||||||    
T  1968181 caaatgtttttccatatgcaccggccagggatcgaaccccagaccaaatggttaatggacccaagtatctaccacttg 1968104  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 34337984 - 34338067
Alignment:
Q  29 gtgcgcaactgcggagactagtcccttcaaggtaactgagatctatttatgaggttgatcttttccaacaaatatttttccata 112  Q
    ||||||||||| ||||||||  ||| ||||||||||||||||| ||||| | |||||| || | ||||||||| ||||||||||    
T  34337984 gtgcgcaactgtggagactaaccccctcaaggtaactgagatccatttaaggggttgacctatcccaacaaatgtttttccata 34338067  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 10677364 - 10677442
Alignment:
Q  103 tttttccatatgcaccggccagagatcgaaccctggaccaaatggttaagggactcaagtatctaccacttgttccacac 182  Q
    |||||||||| |||  || ||| ||| ||||| ||||||||||||||||||| |||||| ||||||||||||| ||||||    
T  10677364 tttttccatacgcattgggcagggatggaaccatggaccaaatggttaaggg-ctcaagcatctaccacttgtgccacac 10677442  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 175
Target Start/End: Complemental strand, 31682939 - 31682830
Alignment:
Q  65 tgagatctatttatgaggttgatcttttccaacaaatatttttccatatgcaccggccagagatcgaaccctggaccaaatggttaagggactcaagtat 164  Q
    ||||||| ||||| |||||| | || ||||||||||| |||||| ||| |||| || |||| ||| |||||| ||||||||||||||||   || |||||    
T  31682939 tgagatccatttaagaggttcacctcttccaacaaatgtttttc-atacgcacaggtcagaaatcaaaccctagaccaaatggttaaggtgttcgagtat 31682841  T
Q  165 ctaccacttgt 175  Q
    |||||||||||    
T  31682840 ctaccacttgt 31682830  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 7553464 - 7553557
Alignment:
Q  82 gttgatcttttccaacaaatatttttccatatgcaccggccagagatcgaaccctggaccaaatggttaagggactcaagtatctaccacttgt 175  Q
    ||||| ||||| |||||||| ||||||||||| |||||  || | ||| |||  |||| |||||||||||||||  |||||||||| |||||||    
T  7553464 gttgacctttttcaacaaatgtttttccatatacaccgatcaaaaatcaaacaatggatcaaatggttaagggatccaagtatctatcacttgt 7553557  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 42930733 - 42930631
Alignment:
Q  69 atctatttatgaggttgatcttttccaacaaatatttttccatatgcaccggccagagatcgaaccctggaccaaatggttaagggactcaagtatctac 168  Q
    ||||||||| |||| ||||||||  |||||||| ||||| |||| ||| || | ||  |||||| |||| | |||||||||||| ||||||| ||||||     
T  42930733 atctatttaagaggatgatcttt--caacaaatgttttttcatacgcatcgactaggaatcgaatcctgaatcaaatggttaagagactcaaatatctat 42930636  T
Q  169 cactt 173  Q
    |||||    
T  42930635 cactt 42930631  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 18186787 - 18186841
Alignment:
Q  65 tgagatctatttatgaggttgatcttttccaacaaatatttttccatatgcaccg 119  Q
    |||||| ||||||  || ||||| ||||||||||||||||||| |||||||||||    
T  18186787 tgagatttatttaaaagattgattttttccaacaaatatttttgcatatgcaccg 18186841  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 28455894 - 28455939
Alignment:
Q  138 gaccaaatggttaagggactcaagtatctaccacttgttccacact 183  Q
    ||||||||| |||||||| ||||||||||| ||||||| |||||||    
T  28455894 gaccaaatgattaagggattcaagtatctatcacttgtgccacact 28455939  T

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Target: scaffold0432 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 1765 - 1809
Alignment:
Q  126 gatcgaaccctggaccaaatggttaagggactcaagtatctacca 170  Q
    ||||||||||| |||||||||||||||| |  |||||||||||||    
T  1765 gatcgaaccctagaccaaatggttaaggcatacaagtatctacca 1809  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 3119735 - 3119803
Alignment:
Q  44 gactagtcccttcaaggtaactgagatctatttatgaggttgatcttttccaacaaatatttttccata 112  Q
    ||||| |||| ||||||||||| ||||| ||||| | |||||| || || |||||||| ||||||||||    
T  3119735 gactaatcccctcaaggtaactaagatccatttaaggggttgacctctttcaacaaatgtttttccata 3119803  T

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