View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_469 (Length: 216)
Name: NF10140A_low_469
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_469 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 52890871 - 52890656
Alignment:
| Q |
1 |
cgaaagtcctaatcccgtggactctattcggctaggtgtggcatgtggtaatactaggctagaagtggagttaatgttgaagagacaaaaggatatacaa |
100 |
Q |
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| T |
52890871 |
cgaaagtcctagtcccgtggactctattcggctaggtgtggcatgtggtaataccaggctagaagtggagttaatgttgaagagacaaaaggatatacaa |
52890772 |
T |
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| Q |
101 |
ggtgaagcttttggagaatgtcagaatatagtgaccccactgggggaaagtttttcaaatgatctaatgggtatgggacatgtggcaaannnnnnnacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
52890771 |
ggtgaagcttttggagaatgtcagaatatagtgaccccactgggggaaagtttttcaaatgatctaatgggtatatgacatgtggcaaaggaggggacaa |
52890672 |
T |
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| Q |
201 |
tggatgacgcgacgtt |
216 |
Q |
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| T |
52890671 |
tggatgacgtgacgtt |
52890656 |
T |
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