View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_47 (Length: 397)
Name: NF10140A_low_47
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 23 - 393
Target Start/End: Original strand, 31970727 - 31971097
Alignment:
| Q |
23 |
cccattagctcaatacaatatttagtgctcgtgttgaactccttcacacaggagaggattctttcccgtgagagtctctccagccaaataatggccttca |
122 |
Q |
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| T |
31970727 |
cccattagctcaatacaatatttagtgctcatgttgaactccatcacacaggagaggattctttcccgtgagagtctctccagccaaatactggccttca |
31970826 |
T |
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| Q |
123 |
aaataaatnnnnnnngagagagaagaattttaatggttgtgattaaaactggatgaaaaaccagtgaaaagtacactggatggaatccatttcccctaca |
222 |
Q |
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| T |
31970827 |
aaataaataaaaaaagagagagaagaattttaatggttgtgattaaaactggatgaaaaaccagtgaaaagtacactggatggaatccatttccccttca |
31970926 |
T |
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| Q |
223 |
cactatcttccttgcattttaaaaaatttgatttcctgtttcagttgtgtattccagcataatttattgttttgtctatttccctgttgcagaccttgtg |
322 |
Q |
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| T |
31970927 |
cactatcttccttgcattttaaaaaatttgatttcctgtttcagttgtgtattccagcataatttattgttttgtctatttccctgttgcagaccttgtg |
31971026 |
T |
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| Q |
323 |
aaattagttgagagaacagttaggtcagaatatgaacgttcaccaaataggcccatatatatttttggaga |
393 |
Q |
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| T |
31971027 |
aaattagttgagagaacagttaggtcagaatatgaacgttcaccaaataggcccatatatcttgttggaga |
31971097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 268 - 393
Target Start/End: Original strand, 31945508 - 31945632
Alignment:
| Q |
268 |
tgtgtattccagcataatttattgttttgtctatttccctgttgcagaccttgtgaaattagttgagagaacagttaggtcagaatatgaacgttcacca |
367 |
Q |
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| T |
31945508 |
tgtgtatgccagcataatttattgttc-gtttatttccctgttgcagaccttgtgaaattagttgagaaaacagttaggtcagaatataaacgttcacca |
31945606 |
T |
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| Q |
368 |
aataggcccatatatatttttggaga |
393 |
Q |
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| T |
31945607 |
aataggcccatatatcttattggaga |
31945632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 276 - 393
Target Start/End: Original strand, 31961325 - 31961442
Alignment:
| Q |
276 |
ccagcataatttattgttttgtctatttccctgttgcagaccttgtgaaattagttgagagaacagttaggtcagaatatgaacgttcaccaaataggcc |
375 |
Q |
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| T |
31961325 |
ccagcatgatttattgttctgtttatttccctattgcagaccttgtgaaattagttgagaaaacagttaggtcagaatatgaacgttcaccaaataggcc |
31961424 |
T |
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| Q |
376 |
catatatatttttggaga |
393 |
Q |
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||| ||| || ||||||| |
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| T |
31961425 |
catttatcttgttggaga |
31961442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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