View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_471 (Length: 216)

Name: NF10140A_low_471
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_471
NF10140A_low_471
[»] chr6 (1 HSPs)
chr6 (40-185)||(31100332-31100477)
[»] chr2 (1 HSPs)
chr2 (40-185)||(31997868-31998013)
[»] chr5 (2 HSPs)
chr5 (40-185)||(7819237-7819382)
chr5 (89-185)||(19358063-19358159)
[»] chr1 (3 HSPs)
chr1 (53-180)||(7445824-7445951)
chr1 (39-185)||(35601300-35601438)
chr1 (47-90)||(50234565-50234608)
[»] chr3 (1 HSPs)
chr3 (47-90)||(46954199-46954242)


Alignment Details
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 40 - 185
Target Start/End: Complemental strand, 31100477 - 31100332
Alignment:
Q  40 cattaatcattgcctccgtgaaggaaaccaatgcgccgacttcatggcaaagcttggggccaactccaacgacgacctctttatccatgttactccacca 139  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| || || || | ||| |||| |||||| ||     
T  31100477 cattcatcattgcctccgtgaaggaaatcaatgcgccgacttcatggcgaagcatggggccaactccaatgaagatctttctattcatgctactcctccg 31100378  T
Q  140 tctgacctcctccctttgattagaagcgacgccatgggaactttct 185  Q
     | ||| | ||||||||||||||||||||||||||| |||||||||    
T  31100377 accgacttactccctttgattagaagcgacgccatgagaactttct 31100332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 40 - 185
Target Start/End: Original strand, 31997868 - 31998013
Alignment:
Q  40 cattaatcattgcctccgtgaaggaaaccaatgcgccgacttcatggcaaagcttggggccaactccaacgacgacctctttatccatgttactccacca 139  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||| || || || | ||| |||| |||||| ||     
T  31997868 cattcatcattgcctccgtgaaggaaatcaatgcgccgacttcatggcgaagcctagggccaactccaatgaagatctttctattcatgctactcctccg 31997967  T
Q  140 tctgacctcctccctttgattagaagcgacgccatgggaactttct 185  Q
     | |||||||||||||||||||||||||||||||||| ||| ||||    
T  31997968 accgacctcctccctttgattagaagcgacgccatggaaaccttct 31998013  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 185
Target Start/End: Original strand, 7819237 - 7819382
Alignment:
Q  40 cattaatcattgcctccgtgaaggaaaccaatgcgccgacttcatggcaaagcttggggccaactccaacgacgacctctttatccatgttactccacca 139  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || || || |  || |||| |||||| ||     
T  7819237 cattcatcattgcctccgtgaaggaaatcaatgcgccgacttcatggcgaagcttggggccaactccaatgaagatctttccattcatgctactcctccg 7819336  T
Q  140 tctgacctcctccctttgattagaagcgacgccatgggaactttct 185  Q
     | ||||| ||||||||||||||||| |||||| ||||||| ||||    
T  7819337 accgacctactccctttgattagaagtgacgccctgggaaccttct 7819382  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 19358159 - 19358063
Alignment:
Q  89 aagcttggggccaactccaacgacgacctctttatccatgttactccaccatctgacctcctccctttgattagaagcgacgccatgggaactttct 185  Q
    |||||||||||||||| ||| || || || | ||| |||| |||| | ||  | |||||||||||||||||||||||||||||||||||||| ||||    
T  19358159 aagcttggggccaacttcaatgaagatctttctattcatgctactgctccgaccgacctcctccctttgattagaagcgacgccatgggaaccttct 19358063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 7445951 - 7445824
Alignment:
Q  53 ctccgtgaaggaaaccaatgcgccgacttcatggcaaagcttggggccaactccaacgacgacctctttatccatgttactccaccatctgacctcctcc 152  Q
    |||||||||||||| || |||||||| |||||||| |||||||||||||||  ||| || || || | | | |||| |||||| ||    ||||| || |    
T  7445951 ctccgtgaaggaaatcagtgcgccgatttcatggcgaagcttggggccaacaacaatgaagatctttcttttcatgctactcctccgagcgaccttcttc 7445852  T
Q  153 ctttgattagaagcgacgccatgggaac 180  Q
    |||||||||||| |||||||||||||||    
T  7445851 ctttgattagaaacgacgccatgggaac 7445824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 185
Target Start/End: Original strand, 35601300 - 35601438
Alignment:
Q  39 ccattaatcattgcctccgtgaaggaaaccaatgcgccgacttcatggcaaagcttggggccaactccaacgacgacctctttatccatgttactccacc 138  Q
    ||||| ||||||| |||||||||||||| |||||  | |||| |||||||||| ||||||||||||||||  ||    |||     |||| |||||| ||    
T  35601300 ccattcatcattgtctccgtgaaggaaatcaatgtactgactacatggcaaagattggggccaactccaatcact---tct-----catgctactcctcc 35601391  T
Q  139 -atctgacctcctccctttgattagaagcgacgccatgggaactttct 185  Q
     ||| || |||||||||||||||||||||||||| |||||||||||||    
T  35601392 gatc-gatctcctccctttgattagaagcgacgcaatgggaactttct 35601438  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 50234608 - 50234565
Alignment:
Q  47 cattgcctccgtgaaggaaaccaatgcgccgacttcatggcaaa 90  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  50234608 cattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaa 50234565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 46954242 - 46954199
Alignment:
Q  47 cattgcctccgtgaaggaaaccaatgcgccgacttcatggcaaa 90  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  46954242 cattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaa 46954199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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