View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_474 (Length: 214)
Name: NF10140A_low_474
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_474 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 11468018 - 11468193
Alignment:
| Q |
21 |
atgactaaataaatatagatgnnnnnnngttttctagatgtaatataggtagaaaaatatatgttcacaaggcattaataaaattatctttcagctaaca |
120 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11468018 |
atgactaaataaatatagatgtttttttgttttctagatgtaatataggtagaaaaatatatgttcacaaggcattaataaaattatctttcagctaaca |
11468117 |
T |
|
| Q |
121 |
tatgcgtacatggaacacataacttacactatattctgtatagaaataattatataattttcaatctacgactgat |
196 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11468118 |
tatgcatacatggaacacataacttacactatattctgtatggaaataattatataattttcaatctacgactgat |
11468193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University