View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_476 (Length: 212)
Name: NF10140A_low_476
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_476 |
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| [»] scaffold0334 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 11177328 - 11177506
Alignment:
| Q |
18 |
aatatatggattatatggcacacgtactcagcaataacaattgttatatgctcagccccgcaacaacaattcaatttaattaaataaaagaaagaaaagg |
117 |
Q |
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| T |
11177328 |
aatatatggattatatggcacacgtactcagcaataacaattgttatatactcagcccagcaacaacaattcaatttaattaaataaaagaaagaaaagg |
11177427 |
T |
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| Q |
118 |
gacgtagcagcagctttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaatgatgt |
196 |
Q |
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| T |
11177428 |
gacgtagcagcagctttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaataatgt |
11177506 |
T |
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Target: scaffold0334 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 16656 - 16460
Alignment:
| Q |
18 |
aatatatggattatatggcacacgtactcagcaataacaattgttatatgctcagccccgcaacaa------------------caattcaatttaatta |
99 |
Q |
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| T |
16656 |
aatatatggattatatggcacacgtactcaacaataacaattgttatatgctcagtcccgcaacaatggaacagccaacaacaacaattcaatttaatta |
16557 |
T |
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| Q |
100 |
aataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaatgatgt |
196 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16556 |
aataaaagaaagaaaagggacgtagcagcaactttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaataatgt |
16460 |
T |
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