View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_477 (Length: 212)

Name: NF10140A_low_477
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_477
NF10140A_low_477
[»] chr3 (1 HSPs)
chr3 (20-198)||(22192924-22193102)
[»] chr5 (1 HSPs)
chr5 (147-199)||(27133443-27133495)
[»] chr4 (1 HSPs)
chr4 (147-199)||(26410624-26410675)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 22193102 - 22192924
Alignment:
Q  20 tatttacacaaatttgtaagattgattttaaaatttgaaagaactaatagtatatagtaggcatgctgataaagtttaacttcactcggttatataccta 119  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22193102 tatttacacaaatttgttagattgattttaaaatctgaaagaactaatagtatatagtaggcatgcagataaagtttaacttcactcggttatataccta 22193003  T
Q  120 attcgtccatttagacaacaatatgataataacaaaccttcctttgaacagattgatatcatgaatgtcctcattgatg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22193002 attcgtccatttagacaacaatatgataataacaaaccttcctttgaacagattgatatcatgaatgccctcattgatg 22192924  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 27133443 - 27133495
Alignment:
Q  147 aataacaaaccttcctttgaacagattgatatcatgaatgtcctcattgatgt 199  Q
    ||||||||||||||| ||||| ||||| || ||||||||||||||||||||||    
T  27133443 aataacaaaccttcccttgaatagattaatctcatgaatgtcctcattgatgt 27133495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 26410675 - 26410624
Alignment:
Q  147 aataacaaaccttcctttgaacagattgatatcatgaatgtcctcattgatgt 199  Q
    ||||||||||||||| ||||| ||||| || ||||||||||||||||||||||    
T  26410675 aataacaaaccttcccttgaa-agattaatctcatgaatgtcctcattgatgt 26410624  T

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