View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_483 (Length: 210)
Name: NF10140A_low_483
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_483 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 885531 - 885693
Alignment:
| Q |
21 |
ttatgtacattaacaaaatgtaagatgaactagattttccccttttattaggccttgaaatgcataatccatatattccacatatagtaatagaaatact |
120 |
Q |
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| T |
885531 |
ttatgtacattaacaaaatgaaagatgaactagattttccccttttattaggccttgaaatgcataatccatatattccacatatagtaatagaaatact |
885630 |
T |
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| Q |
121 |
agttaacaaaaggtagaagcaattaatgcattcctacaaactctccctctccaactcattcat |
183 |
Q |
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| T |
885631 |
agttaacaaaaggtagaagcaattaatgcattcctacaaactctccctctccaactcattcat |
885693 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 1849107 - 1849159
Alignment:
| Q |
37 |
aatgtaagatgaactagattttc-cccttttattaggccttgaaatgcataat |
88 |
Q |
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| T |
1849107 |
aatgaaagatgaactagtttttttcccttatattaggccttgaaatgcataat |
1849159 |
T |
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