View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_484 (Length: 210)

Name: NF10140A_low_484
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_484
NF10140A_low_484
[»] chr6 (9 HSPs)
chr6 (20-194)||(28097221-28097395)
chr6 (32-147)||(29827263-29827378)
chr6 (119-185)||(28186633-28186699)
chr6 (122-185)||(28326717-28326780)
chr6 (122-185)||(28504353-28504416)
chr6 (35-165)||(27697379-27697509)
chr6 (119-185)||(28296617-28296683)
chr6 (119-185)||(28515390-28515456)
chr6 (35-147)||(29842785-29842897)
[»] chr2 (1 HSPs)
chr2 (35-194)||(3280889-3281048)
[»] chr5 (1 HSPs)
chr5 (20-185)||(16692106-16692271)
[»] scaffold0019 (1 HSPs)
scaffold0019 (20-183)||(57072-57235)
[»] chr8 (1 HSPs)
chr8 (20-156)||(31906322-31906458)
[»] chr4 (1 HSPs)
chr4 (64-185)||(5089772-5089893)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 28097221 - 28097395
Alignment:
Q  20 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097221 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 28097320  T
Q  120 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagaataat 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28097321 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataat 28097395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 29827378 - 29827263
Alignment:
Q  32 tcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttcta 131  Q
    |||||||||||||||||||||||||| |    |||||| ||||| ||||||| | ||||||| |||||||||| ||| || | ||| |||||||||||||    
T  29827378 tcatcttcctccaaagcatcaaaacttattttaagtatattttggatctctttattaggaatcctttcatatctatctaatatagatttccattcttcta 29827279  T
Q  132 tatgctttccatacaa 147  Q
    ||| ||||||| ||||    
T  29827278 tattctttccaaacaa 29827263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 28186699 - 28186633
Alignment:
Q  119 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 185  Q
    ||||||||| |||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28186699 ttccattctcctatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28186633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 28326780 - 28326717
Alignment:
Q  122 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 185  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28326780 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28326717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 28504416 - 28504353
Alignment:
Q  122 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 185  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28504416 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28504353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 27697379 - 27697509
Alignment:
Q  35 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 134  Q
    ||||| |||||||||||| | ||||| | |||||| ||||| ||||||| | | ||||| || ||||| | ||| || | | | |||||||||||||| |    
T  27697379 tcttcttccaaagcatcatagctcactctaagtatcttttggatctctttattgggaatcctgtcatacccatctaatatatacttccattcttctatgt 27697478  T
Q  135 gctttccatacaagttggaacctaatatttc 165  Q
     ||||||| ||||||| ||||| | ||||||    
T  27697479 tctttccaaacaagttagaacccactatttc 27697509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 28296617 - 28296683
Alignment:
Q  119 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 185  Q
    |||||||||  ||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28296617 ttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28296683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 28515456 - 28515390
Alignment:
Q  119 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 185  Q
    |||||||||  ||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28515456 ttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28515390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 29842785 - 29842897
Alignment:
Q  35 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 134  Q
    |||||||||||||||||||| || |    |||||| || || ||||||| | ||||||| |||||||| | ||| ||   ||| ||||||||||||||||    
T  29842785 tcttcctccaaagcatcaaagcttattttaagtatattgtggatctctttattaggaatcctttcatacctatctaatgtagatttccattcttctatat 29842884  T
Q  135 gctttccatacaa 147  Q
     ||||||| ||||    
T  29842885 tctttccaaacaa 29842897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 35 - 194
Target Start/End: Complemental strand, 3281048 - 3280889
Alignment:
Q  35 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 134  Q
    ||||||||||||||||||||||||||   |||||| || |||||||||| | ||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  3281048 tcttcctccaaagcatcaaaactcactttaagtatcttctgaatctctttattaggaatcctttcatatcgatccaacaaagaattccactcttttatat 3280949  T
Q  135 gctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagaataat 194  Q
     ||||||| |||||||||||||||||| ||| || |||||||||||||||| || |||||    
T  3280948 tctttccaaacaagttggaacctaatacttctaatgccaatggaaggccagaagcataat 3280889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 16692271 - 16692106
Alignment:
Q  20 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 119  Q
    ||||||||| | |||||||||||||||  ||||||||| ||   ||||||||| |||||   || || |||||| | |||||||||||| ||   ||| |    
T  16692271 aaaacactcttttcatcttcctccaaactatcaaaacttactttaagtattttgtgaattcgtttaccaggaatccattcatatcgatcaaatgtagatt 16692172  T
Q  120 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 185  Q
    ||||||||||||||| ||||||| ||||||| || |||| || ||| || || |||||||||||||    
T  16692171 tccattcttctatattctttccaaacaagttagatcctactacttctaaagctaatggaaggccag 16692106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 57072 - 57235
Alignment:
Q  20 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 119  Q
    |||||| || ||||||||||||||||||||||||| || ||   |||||| | ||| |||| || | | ||||| ||||||||  |||  ||   ||| |    
T  57072 aaaacattcttctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttttaatgggaatcctttcatactgatttaatgcagatt 57171  T
Q  120 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggcc 183  Q
    |||||||| |||||| ||||||| ||||||| ||||| | || ||| |||||||||||||||||    
T  57172 tccattctcctatattctttccaaacaagttcgaacccactacttctaaggccaatggaaggcc 57235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 31906458 - 31906322
Alignment:
Q  20 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 119  Q
    ||||||||  |||||||||||||||||||||||||||| ||    ||||| ||||| ||||||| | | |||||  ||||||||||||  ||   ||| |    
T  31906458 aaaacacttttctcatcttcctccaaagcatcaaaacttactttgagtatattttggatctctttatttggaatgatttcatatcgatgtaatgcagatt 31906359  T
Q  120 tccattcttctatatgctttccatacaagttggaacc 156  Q
     |||||||| ||||| ||||||| | || ||||||||    
T  31906358 cccattcttgtatattctttccaaataaattggaacc 31906322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 5089772 - 5089893
Alignment:
Q  64 aagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttccatacaagttggaacctaatatt 163  Q
    |||||| ||||| || |||| | ||||||| ||||||||   ||| |  ||||| ||||||| |||||||| ||||||| |||| |||||||| |  | |    
T  5089772 aagtatcttttggatttctttattaggaatcctttcatactcatctagtaaagatttccatttttctatatcctttccaaacaaattggaacccacaact 5089871  T
Q  164 tccaaggccaatggaaggccag 185  Q
    || || ||||||||||||||||    
T  5089872 tctaaagccaatggaaggccag 5089893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University