View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_487 (Length: 209)

Name: NF10140A_low_487
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_487
NF10140A_low_487
[»] chr2 (5 HSPs)
chr2 (13-195)||(24308533-24308714)
chr2 (74-135)||(33788498-33788559)
chr2 (74-113)||(25504774-25504813)
chr2 (84-132)||(22885009-22885057)
chr2 (74-114)||(27740150-27740190)
[»] chr4 (1 HSPs)
chr4 (74-133)||(12296331-12296390)
[»] chr7 (3 HSPs)
chr7 (74-135)||(12546273-12546334)
chr7 (74-129)||(9107321-9107375)
chr7 (74-135)||(13311993-13312053)
[»] chr8 (1 HSPs)
chr8 (74-133)||(15906843-15906902)
[»] chr6 (1 HSPs)
chr6 (75-116)||(33968482-33968523)
[»] chr5 (1 HSPs)
chr5 (74-113)||(8731094-8731133)
[»] chr1 (3 HSPs)
chr1 (74-110)||(46603560-46603596)
chr1 (73-114)||(17033763-17033804)
chr1 (75-112)||(38548926-38548963)


Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 24308533 - 24308714
Alignment:
Q  13 acatcatcccctaaaacaaattctttcatgaaacaaccaccgnnnnnnncgatatacataaccactactcatcccaaaataacacccctctaaataaaac 112  Q
    |||||||| ||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24308533 acatcatcacctaaaacaaattctttcatgaaacaaccacc-aaaaaaacgatatacataaccactactcatcccaaaataacacccctctaaataaaac 24308631  T
Q  113 acttcatcctcatcacctaagctacggttatcatgtgatgaatttcaaatcacacatatatagttatagtatgcatatttttc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  24308632 acttcatcctcatcacctaagctacggttatcatgtgatgaatttcaaatcacacgtatatagttatagtatgcatttttttc 24308714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 33788498 - 33788559
Alignment:
Q  74 ccactactcatcccaaaataacacccctctaaataaaacacttcatcctcatcacctaagct 135  Q
    ||||||||| |||||||||||||||||||||||| ||||||  | |||||||||||||||||    
T  33788498 ccactactcgtcccaaaataacacccctctaaatgaaacaccccgtcctcatcacctaagct 33788559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 25504774 - 25504813
Alignment:
Q  74 ccactactcatcccaaaataacacccctctaaataaaaca 113  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  25504774 ccactactcatcccaaaataacacccctctaaatgaaaca 25504813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 22885009 - 22885057
Alignment:
Q  84 tcccaaaataacacccctctaaataaaacacttcatcctcatcacctaa 132  Q
    |||||||||||||||||||||||| ||||||  | ||||||||||||||    
T  22885009 tcccaaaataacacccctctaaatgaaacacaccgtcctcatcacctaa 22885057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 27740190 - 27740150
Alignment:
Q  74 ccactactcatcccaaaataacacccctctaaataaaacac 114  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  27740190 ccactactcatcccagaataacacccctctaaatgaaacac 27740150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 12296390 - 12296331
Alignment:
Q  74 ccactactcatcccaaaataacacccctctaaataaaacacttcatcctcatcacctaag 133  Q
    |||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  12296390 ccactactcatcccaaaataacacccctctaaatgaaacactccgtcctcatcacctaag 12296331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 12546273 - 12546334
Alignment:
Q  74 ccactactcatcccaaaataacacccctctaaataaaacacttcatcctcatcacctaagct 135  Q
    |||||||| ||||||||||||||||||||||||| ||||||| | || ||||||||||||||    
T  12546273 ccactacttatcccaaaataacacccctctaaatgaaacactccgtcgtcatcacctaagct 12546334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 9107375 - 9107321
Alignment:
Q  74 ccactactcatcccaaaataacacccctctaaataaaacacttcatcctcatcacc 129  Q
    |||||||||||||||||||||| ||||||||||| ||||||  |||||||||||||    
T  9107375 ccactactcatcccaaaataactcccctctaaatgaaacac-ccatcctcatcacc 9107321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 13312053 - 13311993
Alignment:
Q  74 ccactactcatcccaaaataacacccctctaaataaaacacttcatcctcatcacctaagct 135  Q
    ||||||| || |||||||||| || ||||||||| ||||||||| ||||| |||||||||||    
T  13312053 ccactacacaccccaaaataa-acacctctaaatgaaacacttcgtcctcgtcacctaagct 13311993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 15906902 - 15906843
Alignment:
Q  74 ccactactcatcccaaaataacacccctctaaataaaacacttcatcctcatcacctaag 133  Q
    ||||||||||||||||||||||||| |||||||||||||||    |||||||||||||||    
T  15906902 ccactactcatcccaaaataacacctctctaaataaaacacactgtcctcatcacctaag 15906843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 33968482 - 33968523
Alignment:
Q  75 cactactcatcccaaaataacacccctctaaataaaacactt 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  33968482 cactactcatcccaaaataacacccctctaaatgaaacactt 33968523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 8731133 - 8731094
Alignment:
Q  74 ccactactcatcccaaaataacacccctctaaataaaaca 113  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  8731133 ccactactcatcccaaaataacacccctctaaatgaaaca 8731094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 46603596 - 46603560
Alignment:
Q  74 ccactactcatcccaaaataacacccctctaaataaa 110  Q
    ||||||||| |||||||||||||||||||||||||||    
T  46603596 ccactactcttcccaaaataacacccctctaaataaa 46603560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 17033804 - 17033763
Alignment:
Q  73 accactactcatcccaaaataacacccctctaaataaaacac 114  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||    
T  17033804 accactactaatcccaaaataacacccctctgaatgaaacac 17033763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 38548926 - 38548963
Alignment:
Q  75 cactactcatcccaaaataacacccctctaaataaaac 112  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  38548926 cactactcatcccaaagtaacacccctctaaatcaaac 38548963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University