View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_490 (Length: 209)

Name: NF10140A_low_490
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_490
NF10140A_low_490
[»] scaffold0090 (1 HSPs)
scaffold0090 (16-190)||(18062-18236)
[»] scaffold0026 (2 HSPs)
scaffold0026 (35-189)||(11840-11994)
scaffold0026 (32-179)||(111595-111741)
[»] chr5 (12 HSPs)
chr5 (35-190)||(38144525-38144679)
chr5 (35-183)||(22751053-22751201)
chr5 (32-178)||(28370055-28370200)
chr5 (35-178)||(19512298-19512441)
chr5 (64-183)||(23528573-23528690)
chr5 (114-178)||(18407944-18408008)
chr5 (123-189)||(22438736-22438803)
chr5 (114-178)||(23111200-23111264)
chr5 (124-179)||(19236900-19236955)
chr5 (123-190)||(42961566-42961633)
chr5 (126-179)||(22461158-22461211)
chr5 (126-179)||(22467782-22467835)
[»] scaffold0025 (1 HSPs)
scaffold0025 (23-176)||(14398-14551)
[»] chr7 (24 HSPs)
chr7 (32-182)||(14422893-14423043)
chr7 (35-183)||(18873272-18873420)
chr7 (35-178)||(15168087-15168230)
chr7 (26-189)||(12709833-12709995)
chr7 (26-189)||(13122904-13123066)
chr7 (37-189)||(13743623-13743774)
chr7 (35-174)||(10895795-10895934)
chr7 (32-178)||(16009486-16009631)
chr7 (64-189)||(12590633-12590756)
chr7 (64-189)||(13007374-13007497)
chr7 (68-176)||(16677239-16677348)
chr7 (68-176)||(17651475-17651584)
chr7 (123-189)||(21230949-21231015)
chr7 (123-178)||(11382871-11382926)
chr7 (123-178)||(11389348-11389403)
chr7 (123-189)||(20311039-20311107)
chr7 (115-178)||(13679485-13679548)
chr7 (124-179)||(2971254-2971309)
chr7 (124-179)||(20906461-20906516)
chr7 (124-178)||(11311059-11311113)
chr7 (143-184)||(831628-831669)
chr7 (143-184)||(1196808-1196849)
chr7 (143-184)||(34958578-34958619)
chr7 (122-178)||(46625961-46626017)
[»] chr3 (18 HSPs)
chr3 (23-176)||(24192856-24193009)
chr3 (35-178)||(14762758-14762901)
chr3 (32-178)||(9534237-9534382)
chr3 (37-176)||(20247791-20247930)
chr3 (32-179)||(23370505-23370652)
chr3 (35-176)||(38310802-38310943)
chr3 (68-189)||(16801457-16801576)
chr3 (95-189)||(41455087-41455178)
chr3 (64-179)||(24933828-24933941)
chr3 (117-178)||(18929239-18929300)
chr3 (114-178)||(17240513-17240577)
chr3 (23-95)||(55499185-55499257)
chr3 (124-179)||(13302240-13302295)
chr3 (124-179)||(13323787-13323842)
chr3 (124-179)||(12033444-12033499)
chr3 (124-179)||(13312896-13312951)
chr3 (124-179)||(17131732-17131787)
chr3 (124-179)||(51301589-51301644)
[»] chr2 (15 HSPs)
chr2 (39-189)||(26583744-26583892)
chr2 (32-178)||(6483627-6483772)
chr2 (32-178)||(6487094-6487239)
chr2 (32-178)||(19661454-19661599)
chr2 (64-179)||(5706023-5706137)
chr2 (114-178)||(23265133-23265197)
chr2 (114-178)||(23280201-23280265)
chr2 (23-176)||(23878909-23879060)
chr2 (23-178)||(23101463-23101617)
chr2 (117-178)||(21908353-21908414)
chr2 (23-176)||(23089057-23089209)
chr2 (122-178)||(24661576-24661632)
chr2 (124-179)||(10577-10632)
chr2 (124-179)||(25180929-25180984)
chr2 (79-188)||(26885139-26885246)
[»] scaffold0924 (1 HSPs)
scaffold0924 (38-189)||(740-892)
[»] scaffold0029 (1 HSPs)
scaffold0029 (35-189)||(111793-111948)
[»] scaffold0058 (1 HSPs)
scaffold0058 (37-189)||(206-356)
[»] scaffold0247 (1 HSPs)
scaffold0247 (23-189)||(11242-11407)
[»] chr8 (14 HSPs)
chr8 (32-179)||(44477532-44477678)
chr8 (32-179)||(44492690-44492836)
chr8 (26-189)||(23866518-23866680)
chr8 (32-176)||(8727735-8727879)
chr8 (64-189)||(17054533-17054656)
chr8 (114-178)||(23482053-23482117)
chr8 (122-178)||(18614271-18614327)
chr8 (123-189)||(14056553-14056619)
chr8 (122-178)||(39364919-39364975)
chr8 (123-189)||(25111976-25112042)
chr8 (124-178)||(29643386-29643440)
chr8 (124-179)||(24320670-24320725)
chr8 (123-190)||(27940840-27940907)
chr8 (122-178)||(21931696-21931752)
[»] chr6 (23 HSPs)
chr6 (35-189)||(29614136-29614291)
chr6 (32-189)||(10986170-10986327)
chr6 (35-178)||(23057850-23057993)
chr6 (23-189)||(18800338-18800503)
chr6 (32-178)||(4477766-4477912)
chr6 (32-178)||(23839107-23839253)
chr6 (44-189)||(930085-930229)
chr6 (64-189)||(12168305-12168428)
chr6 (64-189)||(19287214-19287337)
chr6 (64-189)||(19785859-19785982)
chr6 (64-189)||(19878398-19878521)
chr6 (64-189)||(19884174-19884297)
chr6 (94-179)||(34639986-34640069)
chr6 (114-179)||(34646660-34646725)
chr6 (123-189)||(24512833-24512899)
chr6 (114-179)||(25469704-25469767)
chr6 (23-176)||(21565214-21565366)
chr6 (126-178)||(9187498-9187550)
chr6 (122-178)||(25348486-25348542)
chr6 (122-178)||(25397172-25397228)
chr6 (122-176)||(25598643-25598697)
chr6 (122-178)||(19471335-19471391)
chr6 (114-179)||(31252413-31252478)
[»] chr1 (12 HSPs)
chr1 (32-178)||(20437024-20437170)
chr1 (64-189)||(41111977-41112100)
chr1 (114-178)||(32651563-32651627)
chr1 (114-178)||(18712790-18712854)
chr1 (123-178)||(19663517-19663572)
chr1 (122-178)||(20805320-20805376)
chr1 (123-178)||(11158093-11158148)
chr1 (122-176)||(10811785-10811839)
chr1 (124-179)||(20851132-20851187)
chr1 (124-179)||(20857759-20857814)
chr1 (124-179)||(21706276-21706331)
chr1 (124-179)||(21710818-21710873)
[»] scaffold0553 (1 HSPs)
scaffold0553 (32-179)||(10195-10342)
[»] scaffold0544 (1 HSPs)
scaffold0544 (32-179)||(1525-1672)
[»] scaffold1773 (1 HSPs)
scaffold1773 (35-186)||(1090-1240)
[»] scaffold0006 (1 HSPs)
scaffold0006 (35-186)||(50091-50241)
[»] chr4 (11 HSPs)
chr4 (54-189)||(8045822-8045955)
chr4 (118-189)||(11848108-11848179)
chr4 (64-179)||(53483646-53483760)
chr4 (123-189)||(15408139-15408205)
chr4 (122-178)||(8834895-8834951)
chr4 (122-178)||(13888641-13888697)
chr4 (124-176)||(14486661-14486713)
chr4 (122-178)||(15245215-15245271)
chr4 (122-173)||(22724691-22724742)
chr4 (143-184)||(15747551-15747592)
chr4 (122-178)||(15308120-15308176)
[»] scaffold0154 (1 HSPs)
scaffold0154 (58-189)||(30792-30923)
[»] scaffold0117 (2 HSPs)
scaffold0117 (35-189)||(1887-2040)
scaffold0117 (35-189)||(8564-8717)
[»] scaffold0796 (2 HSPs)
scaffold0796 (64-184)||(1727-1845)
scaffold0796 (64-184)||(5750-5868)
[»] scaffold0456 (2 HSPs)
scaffold0456 (112-183)||(920-991)
scaffold0456 (112-183)||(8065-8136)
[»] scaffold0129 (1 HSPs)
scaffold0129 (66-185)||(45268-45386)
[»] scaffold0107 (1 HSPs)
scaffold0107 (123-189)||(40521-40587)
[»] scaffold0222 (1 HSPs)
scaffold0222 (114-178)||(16811-16875)
[»] scaffold0004 (1 HSPs)
scaffold0004 (114-178)||(116887-116951)
[»] scaffold0310 (1 HSPs)
scaffold0310 (123-189)||(17643-17710)
[»] scaffold0019 (1 HSPs)
scaffold0019 (123-189)||(135473-135539)
[»] scaffold0461 (1 HSPs)
scaffold0461 (114-178)||(8-72)
[»] scaffold0235 (1 HSPs)
scaffold0235 (125-189)||(22582-22646)
[»] scaffold0146 (1 HSPs)
scaffold0146 (114-178)||(13623-13687)
[»] scaffold0077 (1 HSPs)
scaffold0077 (23-176)||(3624-3776)
[»] scaffold0020 (1 HSPs)
scaffold0020 (114-178)||(101928-101992)
[»] scaffold0124 (1 HSPs)
scaffold0124 (123-178)||(34276-34331)
[»] scaffold0476 (1 HSPs)
scaffold0476 (23-176)||(3295-3448)
[»] scaffold0815 (1 HSPs)
scaffold0815 (127-189)||(1453-1515)
[»] scaffold0138 (1 HSPs)
scaffold0138 (122-178)||(12296-12352)
[»] scaffold2054 (1 HSPs)
scaffold2054 (126-189)||(717-780)
[»] scaffold0790 (1 HSPs)
scaffold0790 (157-192)||(5487-5522)
[»] scaffold0317 (1 HSPs)
scaffold0317 (115-178)||(1378-1441)
[»] scaffold0139 (1 HSPs)
scaffold0139 (123-178)||(14997-15052)
[»] scaffold0096 (1 HSPs)
scaffold0096 (122-182)||(39503-39563)
[»] scaffold0001 (1 HSPs)
scaffold0001 (124-188)||(493019-493082)
[»] scaffold0348 (1 HSPs)
scaffold0348 (124-179)||(9336-9391)
[»] scaffold0127 (1 HSPs)
scaffold0127 (124-179)||(10239-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (124-179)||(135438-135493)
[»] scaffold1318 (1 HSPs)
scaffold1318 (124-178)||(1913-1967)
[»] scaffold0609 (1 HSPs)
scaffold0609 (114-179)||(5857-5922)
[»] scaffold0261 (1 HSPs)
scaffold0261 (124-189)||(23559-23624)
[»] scaffold0335 (1 HSPs)
scaffold0335 (122-178)||(2628-2684)
[»] scaffold0003 (2 HSPs)
scaffold0003 (164-192)||(80293-80321)
scaffold0003 (164-192)||(100015-100043)


Alignment Details
Target: scaffold0090 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 18062 - 18236
Alignment:
Q  16 tggacagcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaaccct-aaccctcaatttattttccaaaagctattgc 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| ||||||||||||||||||| |||||||  ||    
T  18062 tggacatcacattacaaacagaattaacatgaccattaccatttcccgttagaatcatcattaaaccttaaccctcaatttattttcctaaagctaa-gc 18160  T
Q  115 aattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaat 190  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18161 aattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaat 18236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 11994 - 11840
Alignment:
Q  35 agaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcag 132  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||| |||| ||||||||||||||||||||    
T  11994 agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaactctcaatttattttccaaaa-ctat-gcaattaggtcaattttcag 11897  T
Q  133 aaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11896 aaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 11840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 32 - 179
Target Start/End: Original strand, 111595 - 111741
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  111595 aacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattttc 111692  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  111693 agaaattatagattatgattattgagagatagtctcacccttaccttag 111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 35 - 190
Target Start/End: Complemental strand, 38144679 - 38144525
Alignment:
Q  35 agaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcaga 133  Q
    ||||||||||||| || ||||  ||||| |||||||||||||||| |||||||||||||||||||||||||||  |  ||||||||||||||||||||||    
T  38144679 agaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaa--ttatgcaattaggtcaattttcaga 38144582  T
Q  134 aattatagattatgattatggagagatagtctcacccttaccttagttttgcagaat 190  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38144581 aattatagattatgattattgagagatagtctcacccttaccttagttttgcagaat 38144525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 22751053 - 22751201
Alignment:
Q  35 agaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcag 132  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||||||||    
T  22751053 agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcag 22751150  T
Q  133 aaattatagattatgattatggagagatagtctcacccttaccttagtttt 183  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  22751151 aaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 22751201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 28370200 - 28370055
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  28370200 aacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattttc 28370103  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  28370102 agaaattatagattatgattattgagagatagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 178
Target Start/End: Original strand, 19512298 - 19512441
Alignment:
Q  35 agaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcaga 133  Q
    ||||||||||||| || ||||  ||||| ||| |||||||||||| |||||||||||||||||| |||||||| |||| |||||||||||||||||||||    
T  19512298 agaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttatcttccaaaaactat-gcaattaggtcaattttcaga 19512396  T
Q  134 aattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  19512397 aattatagattatgattattgagagatagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 23528573 - 23528690
Alignment:
Q  64 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatag 162  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  23528573 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 23528669  T
Q  163 tctcacccttaccttagtttt 183  Q
    |||||||||||||||||||||    
T  23528670 tctcacccttaccttagtttt 23528690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 18408008 - 18407944
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 22438803 - 22438736
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttaccttag-ttttgcagaa 189  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttaccttagattttgcagaa 22438736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 23111264 - 23111200
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 19236900 - 19236955
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 19236955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 42961566 - 42961633
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaat 190  Q
    |||||||||||||| ||| ||||| || || ||  | ||| |||||||||||||||||||||||||||    
T  42961566 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaat 42961633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 22461158 - 22461211
Alignment:
Q  126 ttttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 22467782 - 22467835
Alignment:
Q  126 ttttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 14551 - 14398
Alignment:
Q  23 cacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattag 120  Q
    |||||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||    
T  14551 cacattacaa-cagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactat-gcaattag 14454  T
Q  121 gtcaattttcagaaattatagattatgattatggagagatagtctcacccttacct 176  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14453 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 14422893 - 14423043
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||||||||| || ||||  ||||| |||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  14422893 aacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactat-gcaattaggtcaattttc 14422991  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttaccttagttt 182  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14422992 agaaattatagattatgattattgagagatagtctcacccttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 18873272 - 18873420
Alignment:
Q  35 agaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcag 132  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||||||||    
T  18873272 agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcag 18873369  T
Q  133 aaattatagattatgattatggagagatagtctcacccttaccttagtttt 183  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  18873370 aaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 18873420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 35 - 178
Target Start/End: Original strand, 15168087 - 15168230
Alignment:
Q  35 agaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcag 132  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||||||||    
T  15168087 agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcag 15168184  T
Q  133 aaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  15168185 aaattatagattatgattatcgagagatagtctcacccttacctta 15168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 12709995 - 12709833
Alignment:
Q  26 attacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtc 123  Q
    |||||||| ||||||||||||| ||||||| ||||| | ||| |||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||    
T  12709995 attacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtc 12709898  T
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    ||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12709897 aattt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 12709833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 13123066 - 13122904
Alignment:
Q  26 attacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtc 123  Q
    |||||||| ||||||||||||| ||||||| ||||| | ||| |||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||    
T  13123066 attacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtc 13122969  T
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    ||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13122968 aattt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 13122904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 37 - 189
Target Start/End: Original strand, 13743623 - 13743774
Alignment:
Q  37 aattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaa 134  Q
    ||||||||||| ||||||| ||||| | ||| |||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |    
T  13743623 aattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattt-cagga 13743719  T
Q  135 attatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13743720 attataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 13743774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 10895934 - 10895795
Alignment:
Q  35 agaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcaga 133  Q
    ||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||| |||||||| |||||||| |||| ||||||||||||||||||| |    
T  10895934 agaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactat-gcaattaggtcaattttcaaa 10895836  T
Q  134 aattatagattatgattatggagagatagtctcacccttac 174  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  10895835 aattatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 16009486 - 16009631
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaaccct-aaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||||||||| || ||||  ||||| |||||||||||||||| ||| ||||| |||||||| |||||||| |   |||||||||||||||||||    
T  16009486 aacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccttaacccacaatttatcttccaaaacca--tgcaattaggtcaattttc 16009583  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  16009584 agaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 12590756 - 12590633
Alignment:
Q  64 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatag 162  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  12590756 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 12590660  T
Q  163 tctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||||||||||||    
T  12590659 tctcacccttaccttagttttgcagaa 12590633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 13007374 - 13007497
Alignment:
Q  64 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatag 162  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  13007374 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 13007470  T
Q  163 tctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||||||||||||    
T  13007471 tctcacccttaccttagttttgcagaa 13007497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 16677239 - 16677348
Alignment:
Q  68 aatcatcatcaa-ccctaaccctcaattt-attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatagtct 165  Q
    |||||||||||| |||||||||| ||||| || |||||||| |||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  16677239 aatcatcatcaaaccctaacccttaattttatcttccaaaaactat-gcaattaggtcaatttttagaaattatagattatgattattgagagatagtct 16677337  T
Q  166 cacccttacct 176  Q
    |||||||||||    
T  16677338 cacccttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 17651475 - 17651584
Alignment:
Q  68 aatcatcatcaa-ccctaaccctcaattt-attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatagtct 165  Q
    |||||||||||| |||||||||| ||||| || |||||||| |||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  17651475 aatcatcatcaaaccctaacccttaattttatcttccaaaaactat-gcaattaggtcaatttttagaaattatagattatgattattgagagatagtct 17651573  T
Q  166 cacccttacct 176  Q
    |||||||||||    
T  17651574 cacccttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 21231015 - 21230949
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||    
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaa 21230949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 11382926 - 11382871
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 11389403 - 11389348
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 20311107 - 20311039
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttaccttag--ttttgcagaa 189  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||  ||||||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttaccttagatttttgcagaa 20311039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 13679485 - 13679548
Alignment:
Q  115 aattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||| |||||||||| |||||||| || ||||| || || ||||||||||||||||||||||    
T  13679485 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 2971254 - 2971309
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttaccttag 2971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 20906516 - 20906461
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20906461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 11311059 - 11311113
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||| ||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacctta 11311113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 831669 - 831628
Alignment:
Q  143 ttatgattatggagagatagtctcacccttaccttagttttg 184  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagttttg 831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 1196849 - 1196808
Alignment:
Q  143 ttatgattatggagagatagtctcacccttaccttagttttg 184  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagttttg 1196808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 34958578 - 34958619
Alignment:
Q  143 ttatgattatggagagatagtctcacccttaccttagttttg 184  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagttttg 34958619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 46625961 - 46626017
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||||| ||||||||| ||||| || || ||||| |||||||||||||| ||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcacccttatctta 46626017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 24192856 - 24193009
Alignment:
Q  23 cacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattag 120  Q
    |||||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||    
T  24192856 cacattacaa-cagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactat-gcaattag 24192953  T
Q  121 gtcaattttcagaaattatagattatgattatggagagatagtctcacccttacct 176  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24192954 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 35 - 178
Target Start/End: Complemental strand, 14762901 - 14762758
Alignment:
Q  35 agaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcag 132  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||||||||    
T  14762901 agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcag 14762804  T
Q  133 aaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  14762803 aaattatagattatgattatcgagagatagtctcacccttacctta 14762758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 9534237 - 9534382
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||||||||| || ||||  ||||  |||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  9534237 aacagaattaacatgatcaatacccattccactcagaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattttc 9534334  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  9534335 agaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 37 - 176
Target Start/End: Complemental strand, 20247930 - 20247791
Alignment:
Q  37 aattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaa 134  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  20247930 aattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcagaa 20247833  T
Q  135 attatagattatgattatggagagatagtctcacccttacct 176  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  20247832 attatagattatgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 179
Target Start/End: Complemental strand, 23370652 - 23370505
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||| |||||||| |||||||| |||| ||||||||||||||||||    
T  23370652 aacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactat-gcaattaggtcaattttc 23370554  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  23370553 agaaattatagattatgattattgagagatagtcccacccttaccttag 23370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 35 - 176
Target Start/End: Complemental strand, 38310943 - 38310802
Alignment:
Q  35 agaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcag 132  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||| |||||||||||||| |||||    
T  38310943 agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctat-gcaattaggtcaatattcag 38310846  T
Q  133 aaattatagattatgattatggagagatagtctcacccttacct 176  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  38310845 aaattatagattatgattatcgagagatagtctcacccttacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 16801576 - 16801457
Alignment:
Q  68 aatcatcatcaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatagtctca 167  Q
    |||||||||||||||||||| |||||||  | | |||||||||  ||||| |||||||||||||||||||||| || |||||||| ||||||||||||||    
T  16801576 aatcatcatcaaccctaaccttcaattttatcttcaaaagctaa-gcaatcaggtcaattttcagaaattatatat-atgattattgagagatagtctca 16801479  T
Q  168 cccttaccttagttttgcagaa 189  Q
    ||||||||||||||||||||||    
T  16801478 cccttaccttagttttgcagaa 16801457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 41455178 - 41455087
Alignment:
Q  95 tattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41455178 tattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 41455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 24933941 - 24933828
Alignment:
Q  64 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatag 162  Q
    |||||||||||||||| ||||||   |||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  24933941 tcagaatcatcatcaaaccctaattttcatattattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 24933845  T
Q  163 tctcacccttaccttag 179  Q
    |||||||||||||||||    
T  24933844 tctcacccttaccttag 24933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 18929239 - 18929300
Alignment:
Q  117 ttaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 17240577 - 17240513
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 55499257 - 55499185
Alignment:
Q  23 cacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatc-aaccctaaccctcaattt 95  Q
    |||||||||| || ||||||||||| |||||||  ||||| |||||||||||||| ||||||||||||||||||    
T  55499257 cacattacaa-cataattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaattt 55499185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 13302295 - 13302240
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13302240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 13323842 - 13323787
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13323787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 12033499 - 12033444
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 12033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 13312951 - 13312896
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    |||||||| |||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttag 13312896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 17131732 - 17131787
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 17131787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 51301589 - 51301644
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||| | ||||||||||| |  ||||| |||||||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 51301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 39 - 189
Target Start/End: Original strand, 26583744 - 26583892
Alignment:
Q  39 ttaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaatt 137  Q
    ||||||||| ||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||    
T  26583744 ttaacatgatcattaccctttcccctcagaatcatcatcaagccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattt-cagaaatt 26583840  T
Q  138 atagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26583841 atagattatgattattgagagatagtctcacccttaccttagttttgcagaa 26583892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 6483627 - 6483772
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  6483627 aacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattttc 6483724  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  6483725 agaaattatagattatgattattgagagatagtctcacccttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 6487094 - 6487239
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  6487094 aacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattttc 6487191  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  6487192 agaaattatagattatgattattgagagatagtctcacccttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 19661599 - 19661454
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||||||||| || ||||  ||||| |||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  19661599 aacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctat-gcaattaggtcaattttc 19661502  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||    
T  19661501 agaaattatagattatgattatcgagagaaagtctcacccttacctta 19661454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 5706137 - 5706023
Alignment:
Q  64 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatag 162  Q
    |||||||||||||||| ||||||   |||  ||||||| ||||| ||||| ||||||||||||||| ||| ||||||||||||||||||  |||||||||    
T  5706137 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactatt-caattaggtcaattt-caggaattatagattatgattaatgagagatag 5706040  T
Q  163 tctcacccttaccttag 179  Q
    |||||||||||||||||    
T  5706039 tctcacccttaccttag 5706023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 23265133 - 23265197
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23265133 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 23280201 - 23280265
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23280201 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 23878909 - 23879060
Alignment:
Q  23 cacattacaaacagaattaacatgaccattaccat-ttcccgtcagaatcatcatcaaccctaaccctcaatttattttccaaaagctattgcaattagg 121  Q
    |||||||||| || ||||||||||| |||||||   ||||| |||||||||||| |||||||||||||||||||| |  ||  ||| |   |||||||||    
T  23878909 cacattacaa-cataattaacatgatcattaccccattcccctcagaatcatcaacaaccctaaccctcaatttaat--cctcaaggttaagcaattagg 23879005  T
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacct 176  Q
    ||||||||  ||||||||| || || ||||  |||||||||||||||||||||||    
T  23879006 tcaatttttcgaaattatatataattattaatgagagatagtctcacccttacct 23879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 23101617 - 23101463
Alignment:
Q  23 cacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatc-aaccctaaccctcaatttattttccaaaagctattgcaattagg 121  Q
    |||||||||| || ||||||||||| |||||||  ||||| |||||||||||||| |||||||||||||||||  || |||  ||| |    ||||||||    
T  23101617 cacattacaa-cataattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaatt--ttatcctcaaggttaaacaattagg 23101521  T
Q  122 tcaattttcagaaattatagattat-gattatggagagatagtctcacccttacctta 178  Q
    ||||||||| ||||||| | |||||  ||||  |||||||||||||||||||||||||    
T  23101520 tcaattttccgaaattacatattatctattaatgagagatagtctcacccttacctta 23101463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 21908353 - 21908414
Alignment:
Q  117 ttaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 23089209 - 23089057
Alignment:
Q  23 cacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatc-aaccctaaccctcaatttattttccaaaagctattgcaattagg 121  Q
    |||||||||| || ||||||||||| |||||||  ||||| | |||||||||||| |||||||||||||||||  || |||  ||| |   |||||||||    
T  23089209 cacattacaa-cataattaacatgatcattacccattccccttagaatcatcatcaaaccctaaccctcaatt--ttatcctcaaggttaagcaattagg 23089113  T
Q  122 tcaattttcagaaattatagattat-gattatggagagatagtctcacccttacct 176  Q
    ||||||||| ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  23089112 tcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacct 23089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 24661576 - 24661632
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 24661632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 10577 - 10632
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 25180984 - 25180929
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 25180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 26885139 - 26885246
Alignment:
Q  79 accctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||  |||||||| || ||||| | ||||| || |||| | ||||||||||||||||| |||| |||||| || ||||| || |||||||||||||    
T  26885139 accctaattctcaattttttctccaagaactattcca-ttagattaattttcagaaattatacatta-gattattgaaagataatcccacccttacctta 26885236  T
Q  179 gttttgcaga 188  Q
    |  |||||||    
T  26885237 gaattgcaga 26885246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 38 - 189
Target Start/End: Complemental strand, 892 - 740
Alignment:
Q  38 attaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaa 135  Q
    |||| ||||| ||||||| ||||||| ||| |||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  892 attatcatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaaactat-gcaattaggtcaattttcagaaa 794  T
Q  136 ttatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  793 ttatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 111793 - 111948
Alignment:
Q  35 agaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaatttt-ca 131  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||||| ||    
T  111793 agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctat-gcaattaggtcaatttttca 111890  T
Q  132 gaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  111891 gaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 111948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 37 - 189
Target Start/End: Original strand, 206 - 356
Alignment:
Q  37 aattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaa 135  Q
    ||||||||||| |||||||  ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  206 aattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattt-cagaaa 302  T
Q  136 ttatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  303 ttatagattatggttattgagagatagtctcacccttaccttagttttgcagaa 356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 11242 - 11407
Alignment:
Q  23 cacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatt-tattttccaaaagctattgcaattag 120  Q
    |||||||||| |||||||||||||| ||||||   |||||  ||||||||||||||| ||||||||||||||| |||||||||||| |||  ||||||||    
T  11242 cacattacaa-cagaattaacatgatcattactcattccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaa-ctaa-gcaattag 11338  T
Q  121 gtcaattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11339 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 11407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 32 - 179
Target Start/End: Original strand, 44477532 - 44477678
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  44477532 aacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattttc 44477629  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44477630 agaaattatagattatgattattgagagatagtctcacccttaccttag 44477678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 32 - 179
Target Start/End: Original strand, 44492690 - 44492836
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  44492690 aacagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattttc 44492787  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44492788 agaaattatagattatgattattgagagatagtctcacccttaccttag 44492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 23866518 - 23866680
Alignment:
Q  26 attacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtc 123  Q
    |||||||| ||||||||||||| ||||||| ||||| | ||| |||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||    
T  23866518 attacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtc 23866615  T
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    ||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23866616 aattt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 23866680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 32 - 176
Target Start/End: Complemental strand, 8727879 - 8727735
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||||||||| || ||||  | ||| ||||||||||| |||| |||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  8727879 aacagaattaacatgatcaatacccatacccctcagaatcatcgtcaaaccctaaccctcaatttatcttccaaaaactat-gcaattaggtcaattttc 8727781  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttacct 176  Q
    |||||||||||||||||||||| ||| |||| ||||||||||||||    
T  8727780 agaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 17054533 - 17054656
Alignment:
Q  64 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatag 162  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  17054533 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-caggaattatagattatgattattgagagatag 17054629  T
Q  163 tctcacccttaccttagttttgcagaa 189  Q
    ||||||||||||||| |||||||||||    
T  17054630 tctcacccttaccttggttttgcagaa 17054656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 23482117 - 23482053
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 18614271 - 18614327
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  18614271 tcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 14056619 - 14056553
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||| ||| | | ||| ||||| |||||||||||||||||||||||||| |||||||||    
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgcagaa 14056553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 39364919 - 39364975
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 39364975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 25111976 - 25112042
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||| ||| | | ||| ||||| |||||||||||||||||||||||||| |||| ||||    
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgtagaa 25112042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 29643440 - 29643386
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||||||||||| | ||||||||||| || ||||| ||||||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 24320725 - 24320670
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 24320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 27940907 - 27940840
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaat 190  Q
    |||||||||||||| ||| ||||| || || ||  | ||| |||||||||||||||||||||||||||    
T  27940907 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaat 27940840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 21931696 - 21931752
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||||||||| ||||| ||||| || || ||||| ||| |||||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 21931752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 7e-48; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 29614291 - 29614136
Alignment:
Q  35 agaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcag 132  Q
    ||||||||||||| ||||||| ||||||| ||| |||||||||||| ||||||||||||||||||||| | |||  ||| |||| |||||||||||||||    
T  29614291 agaattaacatgatcattacccatttcccttcataatcatcatcaaaccctaaccctcaatttatttttccaaaattat-gcaactaggtcaattttcag 29614193  T
Q  133 aaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29614192 aaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 29614136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 32 - 189
Target Start/End: Complemental strand, 10986327 - 10986170
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||||||||| || ||||  ||||| |||||||||||||||| |||||||||||||||||| |||||||| |||| |||||||||||||||||     
T  10986327 aacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactat-gcaattaggtcaattttt 10986229  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||  ||||||||    
T  10986228 agaaattatagattatgattattgaaagatagtctcacccttaccttagaattgcagaa 10986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 35 - 178
Target Start/End: Original strand, 23057850 - 23057993
Alignment:
Q  35 agaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcag 132  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||||||||    
T  23057850 agaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcag 23057947  T
Q  133 aaattatagattatgattatggagagatagtctcacccttacctta 178  Q
     ||||||||||||||||||| |||||||||||||||||||||||||    
T  23057948 gaattatagattatgattatcgagagatagtctcacccttacctta 23057993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 18800338 - 18800503
Alignment:
Q  23 cacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatt-tattttccaaaagctattgcaattag 120  Q
    |||||||||| |||||||||||||| ||||||   |||||  ||||||||||||||| ||||||||||||||| |||||||||||| |||  ||||||||    
T  18800338 cacattacaa-cagaattaacatgatcattactcattccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaa-ctaa-gcaattag 18800434  T
Q  121 gtcaattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  18800435 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttacattagttttgcagaa 18800503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 4477766 - 4477912
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||| ||||| || ||||  ||||| |||||||||||||||| ||||||||| |||||||| |||||||| |||| ||||||||||||||||||    
T  4477766 aacagaattagcatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactat-gcaattaggtcaattttc 4477864  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  4477865 agaaattatagattatgattattgagagatagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 23839107 - 23839253
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||||||||| || ||||  ||||| | |||||||||||||| |||||||||||||||||| |||||||  |||| ||||||||||||||||||    
T  23839107 aacagaattaacatgatcaatacccattccccttagaatcatcatcaaaccctaaccctcaatttatcttccaaacactat-gcaattaggtcaattttc 23839205  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  23839206 agaaattatagattatgattattgagagatagtctcacccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 930229 - 930085
Alignment:
Q  44 atgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattataga 142  Q
    |||| |||||||  ||||| |||||| ||||||||| ||||||||||||||||||||| ||||| ||||  |||||||||||||||||||||| ||||||    
T  930229 atgatcattacccattcccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaa-ctata-caattaggtcaattttcagaaactataga 930132  T
Q  143 ttatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  930131 ttatgattattgagagatagtctcacccttaccttagttttgcagaa 930085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 12168305 - 12168428
Alignment:
Q  64 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatag 162  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  12168305 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 12168401  T
Q  163 tctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||||||||||||    
T  12168402 tctcacccttaccttagttttgcagaa 12168428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 19287214 - 19287337
Alignment:
Q  64 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatag 162  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  19287214 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 19287310  T
Q  163 tctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||||||||||||    
T  19287311 tctcacccttaccttagttttgcagaa 19287337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 19785982 - 19785859
Alignment:
Q  64 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatag 162  Q
    |||||||||||||||| |||||||  ||| |||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||    
T  19785982 tcagaatcatcatcaaaccctaactttcattttattttccaaaa-ctatt-caactaggtcaattt-cagaaattatagattatgattattgagagatag 19785886  T
Q  163 tctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||||||||||||    
T  19785885 tctcacccttaccttagttttgcagaa 19785859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 19878398 - 19878521
Alignment:
Q  64 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatag 162  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  19878398 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 19878494  T
Q  163 tctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||||||||||||    
T  19878495 tctcacccttaccttagttttgcagaa 19878521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 19884174 - 19884297
Alignment:
Q  64 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatag 162  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  19884174 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 19884270  T
Q  163 tctcacccttaccttagttttgcagaa 189  Q
    ||||||||| |||||||||||||||||    
T  19884271 tctcaccctaaccttagttttgcagaa 19884297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 34640069 - 34639986
Alignment:
Q  94 ttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34640069 ttattttccaaaa-ctatt-caattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34639986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 34646725 - 34646660
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34646725 caattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 24512899 - 24512833
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||| ||||||| |||||||||    
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgcagaa 24512833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 25469767 - 25469704
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  25469767 caattaggtcaattt-cagaa-ttatagattatgattattgagagatagtctcacccttaccttag 25469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 21565366 - 21565214
Alignment:
Q  23 cacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatc-aaccctaaccctcaatttattttccaaaagctattgcaattagg 121  Q
    |||||||||| || ||||||||||| |||||||  ||||| | |||||||||||| |||||||||||||||||  || |||  ||| |   |||||||||    
T  21565366 cacattacaa-cataattaacatgatcattacccattccccttagaatcatcatcaaaccctaaccctcaatt--ttatcctcaaggttaagcaattagg 21565270  T
Q  122 tcaattttcagaaattatagattat-gattatggagagatagtctcacccttacct 176  Q
    ||||||||| ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  21565269 tcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacct 21565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 9187498 - 9187550
Alignment:
Q  126 ttttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 25348486 - 25348542
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 25348542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 25397172 - 25397228
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 25397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 25598643 - 25598697
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacct 176  Q
    |||||||||||||| |||| |||||||| || ||||| |||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacct 25598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 19471391 - 19471335
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||| ||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacctta 19471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 31252413 - 31252478
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||| | ||||||||||||||||| ||||| || ||  | ||||| |||||||||||||||||    
T  31252413 caattagattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttag 31252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 20437170 - 20437024
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||| ||||||||||| || ||||  ||||| |||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  20437170 aacataattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactat-gcaattaggtcaattttc 20437072  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  20437071 agaaattatagattatgattattgagagatagtctcacccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 41111977 - 41112100
Alignment:
Q  64 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatag 162  Q
    |||||||||||||||| |||||||  |||  ||||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  41111977 tcagaatcatcatcaaaccctaactttcatcttatttttcaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 41112073  T
Q  163 tctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||||||||||||    
T  41112074 tctcacccttaccttagttttgcagaa 41112100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 32651563 - 32651627
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 18712790 - 18712854
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 19663572 - 19663517
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 20805320 - 20805376
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 20805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 11158093 - 11158148
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 11158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 10811839 - 10811785
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacct 176  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacct 10811785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 20851187 - 20851132
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 20857814 - 20857759
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20857759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 21706276 - 21706331
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 21710818 - 21710873
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21710873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 179
Target Start/End: Complemental strand, 10342 - 10195
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||| |||||||| |||||||| |||| ||||||||||||||||||    
T  10342 aacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactat-gcaattaggtcaattttc 10244  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  10243 agaaattatagattatgattattgagagatagtcccacccttaccttag 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 179
Target Start/End: Complemental strand, 1672 - 1525
Alignment:
Q  32 aacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttc 130  Q
    |||||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||| |||||||| |||||||| |||| ||||||||||||||||||    
T  1672 aacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactat-gcaattaggtcaattttc 1574  T
Q  131 agaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  1573 agaaattatagattatgattattgagagatagtcccacccttaccttag 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 1090 - 1240
Alignment:
Q  35 agaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcag 132  Q
    ||||||||||||| ||||||| ||||||| ||| |||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |||    
T  1090 agaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattt-cag 1186  T
Q  133 aaattatagattatgattatggagagatagtctcacccttaccttagttttgca 186  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1187 gaattatagattatgattattgagagatagtctcacccttaccttagttttgca 1240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 50091 - 50241
Alignment:
Q  35 agaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcag 132  Q
    ||||||||||||| ||||||| ||||||| ||| |||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |||    
T  50091 agaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattt-cag 50187  T
Q  133 aaattatagattatgattatggagagatagtctcacccttaccttagttttgca 186  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50188 gaattatagattatgattattgagagatagtctcacccttaccttagttttgca 50241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 8045955 - 8045822
Alignment:
Q  54 ccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattat 152  Q
    ||||||||| |||||||  || |||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  8045955 ccatttcccttcagaattctcgtcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattt-cagaaattatagattatgattat 8045859  T
Q  153 ggagagatagtctcacccttaccttagttttgcagaa 189  Q
     ||||||||||||||||||||||||||||||||||||    
T  8045858 cgagagatagtctcacccttaccttagttttgcagaa 8045822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 11848108 - 11848179
Alignment:
Q  118 taggtcaattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11848108 taggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 11848179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 53483646 - 53483760
Alignment:
Q  64 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatag 162  Q
    |||||||||||||||| ||||||   |||  ||||||| ||||| ||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  53483646 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactatt-caattaggtcaattt-caggaattatagattatgattattgagagatag 53483743  T
Q  163 tctcacccttaccttag 179  Q
    |||||||||||||||||    
T  53483744 tctcacccttaccttag 53483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 15408139 - 15408205
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| | |||||||    
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatctgcagaa 15408205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 8834895 - 8834951
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 8834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 13888641 - 13888697
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacctta 13888697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 14486661 - 14486713
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttacct 176  Q
    ||||||||||||||||| |||||||| || ||  |||||||||||||||||||    
T  14486661 aattttcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 15245215 - 15245271
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||||||||||||||| |||| ||| || ||||| ||| |||||||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacctta 15245271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcaccctta 173  Q
    |||||||||||||||| || | ||| ||||| ||||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 15747592 - 15747551
Alignment:
Q  143 ttatgattatggagagatagtctcacccttaccttagttttg 184  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagttttg 15747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 15308120 - 15308176
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||||||||||||||| |||| ||| || ||||| ||| |||||||||| ||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaactta 15308176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 30792 - 30923
Alignment:
Q  58 ttcccgtcagaatcatcatcaa-ccctaaccctcaattt-attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatgga 155  Q
    ||||| ||| |||||||||||| |||||| ||||||||| |  |||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||    
T  30792 ttcccctcaaaatcatcatcaaaccctaatcctcaattttaccttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattga 30889  T
Q  156 gagatagtctcacccttaccttagttttgcagaa 189  Q
    ||||||||||||||||||||||||||||||||||    
T  30890 gagatagtctcacccttaccttagttttgcagaa 30923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 2040 - 1887
Alignment:
Q  35 agaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaatttt-cag 132  Q
    ||||||||||| | |||||||  ||||  ||| |||||||||||| ||||||||||||| ||||||||||||| ||||  |||||||||||||||| |||    
T  2040 agaattaacataatcattacccattcca-tcaaaatcatcatcaaaccctaaccctcaaattattttccaaaa-ctata-caattaggtcaatttttcag 1944  T
Q  133 aaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  1943 aaattatagattatgattattgagatatagtctcacccttaccttagttttgcagaa 1887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 8717 - 8564
Alignment:
Q  35 agaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaatttt-cag 132  Q
    ||||||||||| | |||||||  ||||  ||| |||||||||||| ||||||||||||| ||||||||||||| ||||  |||||||||||||||| |||    
T  8717 agaattaacataatcattacccattcca-tcataatcatcatcaaaccctaaccctcaaattattttccaaaa-ctata-caattaggtcaatttttcag 8621  T
Q  133 aaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  8620 aaattatagattatgattattgagatatagtctcacccttaccttagttttgcagaa 8564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 64 - 184
Target Start/End: Complemental strand, 1845 - 1727
Alignment:
Q  64 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatag 162  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  1845 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctatt-caattaggtcaattt-caggaattatagattatgattattgagagatag 1749  T
Q  163 tctcacccttaccttagttttg 184  Q
    ||||||||||||||||||||||    
T  1748 tctcacccttaccttagttttg 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 64 - 184
Target Start/End: Complemental strand, 5868 - 5750
Alignment:
Q  64 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatag 162  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  5868 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctatt-caattaggtcaattt-caggaattatagattatgattattgagagatag 5772  T
Q  163 tctcacccttaccttagttttg 184  Q
    ||||||||||||||||||||||    
T  5771 tctcacccttaccttagttttg 5750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 920 - 991
Alignment:
Q  112 tgcaattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttaccttagtttt 183  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  920 tgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 8065 - 8136
Alignment:
Q  112 tgcaattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttaccttagtttt 183  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  8065 tgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 8136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 66 - 185
Target Start/End: Complemental strand, 45386 - 45268
Alignment:
Q  66 agaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatggagagatagtc 164  Q
    |||||||||||||| ||||||   |||  ||||||| ||||| ||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  45386 agaatcatcatcaaaccctaattttcatattatttttcaaaaactatt-caattaggtcaattt-caggaattatagattatgattattgagagatagtc 45289  T
Q  165 tcacccttaccttagttttgc 185  Q
    ||||||||||||||| |||||    
T  45288 tcacccttaccttagatttgc 45268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 40587 - 40521
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||    
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaa 40521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 16811 - 16875
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 116887 - 116951
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 17643 - 17710
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttaccttag-ttttgcagaa 189  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| ||||||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttaccttagattttgcagaa 17710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 135473 - 135539
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| ||| |||||    
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagattttcagaa 135539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 72 - 8
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 22646 - 22582
Alignment:
Q  125 attttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||||||| | |||||||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgcagaa 22582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 13623 - 13687
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 3776 - 3624
Alignment:
Q  23 cacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatc-aaccctaaccctcaatttattttccaaaagctattgcaattagg 121  Q
    |||||||||| || ||||||||||| |||||||  | ||| |||||||||||||| |||||||||||||||||  || |||  ||| |   |||||||||    
T  3776 cacattacaa-cataattaacatgatcattacccatccccctcagaatcatcatcaaaccctaaccctcaatt--ttatcctcaaggttaagcaattagg 3680  T
Q  122 tcaattttcagaaattatagattat-gattatggagagatagtctcacccttacct 176  Q
    ||||||||| ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  3679 tcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 3624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 101992 - 101928
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||| ||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 34331 - 34276
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 3448 - 3295
Alignment:
Q  23 cacattacaaacagaattaacatgac-cattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattag 120  Q
    |||||||||| || |||||||||||  |||||||  ||||| |||||||||||||||| ||||||||||||||||  | |||  ||| |   ||||||||    
T  3448 cacattacaa-caaaattaacatgattcattacccattcccctcagaatcatcatcaaaccctaaccctcaattt--tatccccaaggttaagcaattag 3352  T
Q  121 gtcaattttcagaaattatagattatg-attatggagagatagtctcacccttacct 176  Q
    |||||||||| ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  3351 gtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 3295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 1453 - 1515
Alignment:
Q  127 tttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    |||||||||||||| |||| ||| || ||||| ||||||||||||||||||| ||||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttaccttaattttgcagaa 1515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 12296 - 12352
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 717 - 780
Alignment:
Q  126 ttttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    ||||||||||||||| |||| ||| || || ||||| || ||||||||||||||||||||||||    
T  717 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagttttgcagaa 780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 5487 - 5522
Alignment:
Q  157 agatagtctcacccttaccttagttttgcagaataa 192  Q
    ||||||||||||||||||||||||||||||||||||    
T  5487 agatagtctcacccttaccttagttttgcagaataa 5522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 1378 - 1441
Alignment:
Q  115 aattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||| |||||||||| |||||||| || ||||| || || ||||||||||||||||||||||    
T  1378 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 15052 - 14997
Alignment:
Q  123 caattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    |||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 14997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 39563 - 39503
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttt 182  Q
    ||||||||| ||||||||| |||||||| || ||||| ||| |||||||||||||| ||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacctttgttt 39503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 493082 - 493019
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcaga 188  Q
    ||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||  |||||||    
T  493082 aattttcagaaattatacatta-gattattgaaagataatctcacccttaccttagaattgcaga 493019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 9336 - 9391
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 9391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 10239 - 10294
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||| | ||||||||||| |  ||||| |||||||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 10294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 135438 - 135493
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||||||||||||| ||||||| ||| || ||||| |||||| ||||||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttaccttag 135493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 1967 - 1913
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||||||||||||| ||||||| ||| || ||||| || |||||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 1913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 5922 - 5857
Alignment:
Q  114 caattaggtcaattttcagaaattatagattatgattatggagagatagtctcacccttaccttag 179  Q
    ||||||| | ||||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  5922 caattagattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttag 5857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 23624 - 23559
Alignment:
Q  124 aattttcagaaattatagattatgattatggagagatagtctcacccttaccttagttttgcagaa 189  Q
    ||||||||||||||||| |||||||| ||  | ||||| || ||||||||||||||  ||||||||    
T  23624 aattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgcagaa 23559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 2684 - 2628
Alignment:
Q  122 tcaattttcagaaattatagattatgattatggagagatagtctcacccttacctta 178  Q
    ||||||||||||| ||||| ||||| || || ||||| ||| |||||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 2628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 80321 - 80293
Alignment:
Q  164 ctcacccttaccttagttttgcagaataa 192  Q
    |||||||||||||||||||||||||||||    
T  80321 ctcacccttaccttagttttgcagaataa 80293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 100043 - 100015
Alignment:
Q  164 ctcacccttaccttagttttgcagaataa 192  Q
    |||||||||||||||||||||||||||||    
T  100043 ctcacccttaccttagttttgcagaataa 100015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University