View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_494 (Length: 208)

Name: NF10140A_low_494
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_494
NF10140A_low_494
[»] chr8 (6 HSPs)
chr8 (12-208)||(42215375-42215571)
chr8 (84-135)||(22790506-22790556)
chr8 (14-121)||(11841264-11841373)
chr8 (23-76)||(14482139-14482192)
chr8 (91-132)||(31751707-31751748)
chr8 (97-137)||(4389817-4389857)
[»] chr4 (9 HSPs)
chr4 (91-140)||(39178386-39178435)
chr4 (90-132)||(47399412-47399454)
chr4 (97-130)||(1965834-1965867)
chr4 (23-68)||(24929438-24929483)
chr4 (83-128)||(42461172-42461217)
chr4 (14-63)||(53422312-53422361)
chr4 (84-132)||(4212811-4212858)
chr4 (35-104)||(4471078-4471149)
chr4 (84-132)||(19039659-19039707)
[»] chr5 (11 HSPs)
chr5 (34-132)||(6593178-6593279)
chr5 (97-138)||(7907752-7907793)
chr5 (97-132)||(38105020-38105055)
chr5 (16-62)||(29117003-29117049)
chr5 (23-76)||(19177416-19177469)
chr5 (23-64)||(28586846-28586887)
chr5 (91-132)||(34590379-34590420)
chr5 (23-76)||(36646177-36646230)
chr5 (23-76)||(37063154-37063207)
chr5 (23-63)||(14295456-14295496)
chr5 (23-63)||(28578842-28578882)
[»] chr7 (7 HSPs)
chr7 (84-139)||(34672893-34672948)
chr7 (89-132)||(35331022-35331065)
chr7 (90-132)||(425971-426013)
chr7 (16-130)||(30133932-30134046)
chr7 (23-76)||(35536044-35536097)
chr7 (16-76)||(3610813-3610873)
chr7 (23-63)||(12835017-12835057)
[»] chr2 (6 HSPs)
chr2 (23-65)||(33192141-33192183)
chr2 (98-132)||(12140444-12140478)
chr2 (89-131)||(12313321-12313363)
chr2 (12-45)||(28251939-28251972)
chr2 (108-140)||(11863792-11863824)
chr2 (12-76)||(13866826-13866890)
[»] chr3 (6 HSPs)
chr3 (22-132)||(34958207-34958319)
chr3 (95-132)||(34034040-34034076)
chr3 (92-132)||(3776781-3776821)
chr3 (13-65)||(34954031-34954083)
chr3 (98-130)||(46434750-46434782)
chr3 (23-63)||(49586996-49587036)
[»] chr1 (8 HSPs)
chr1 (90-131)||(10280521-10280562)
chr1 (14-76)||(4699683-4699745)
chr1 (12-78)||(33527216-33527282)
chr1 (109-142)||(51190716-51190749)
chr1 (97-133)||(18327266-18327302)
chr1 (84-132)||(35058900-35058948)
chr1 (24-76)||(43029482-43029534)
chr1 (90-130)||(48064189-48064229)
[»] chr6 (5 HSPs)
chr6 (97-137)||(24626159-24626198)
chr6 (16-63)||(9027527-9027574)
chr6 (14-130)||(10657132-10657250)
chr6 (90-132)||(7946023-7946065)
chr6 (97-131)||(26550370-26550404)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 5e-98; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 42215375 - 42215571
Alignment:
Q  12 tagattatactaaaacagtttgactttattttatctcatgttgtagaaatagttcatccataagcgcatataataattgcttattctataagctgtaaaa 111  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42215375 tagattatacaaaaacagtttgactttattttatctcatgttgtagaaatagttcatccataagcgcatataataattgcttattctataagctgtaaaa 42215474  T
Q  112 taagttgtttatccaaacaggtccttattgaaatcaacttgcaagttgcaactacctttaacaaattccaatcgaactaattctaacacatatcgat 208  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42215475 taagctgtttatccaaacagatccttattgaaatcaacttgcaagttgcatctacctttaacaaattccaatcgaactaattctaacacatatcgat 42215571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 22790556 - 22790506
Alignment:
Q  84 ataattgcttattctataagctgtaaaataagttgtttatccaaacaggtcc 135  Q
    |||| ||||||  |||||||||||||| ||||||||||||||||||||||||    
T  22790556 ataagtgcttacactataagctgtaaa-taagttgtttatccaaacaggtcc 22790506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 11841264 - 11841373
Alignment:
Q  14 gattatactaaaacagtttgactttattttatctcatgttgtagaaatagttcatccataagcgcatataa--taattgcttattctataagctgtaaaa 111  Q
    |||||||  |||||| ||||||| |||||||||   |||| || ||||||||  | |||||| || |||||  |||||| |||||||||||| || ||||    
T  11841264 gattatatgaaaacaatttgactctattttatcatgtgttatataaatagtttgttcataagtgcttataagttaattgtttattctataaggtggaaaa 11841363  T
Q  112 taagttgttt 121  Q
    ||||||||||    
T  11841364 taagttgttt 11841373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 14482192 - 14482139
Alignment:
Q  23 aaaacagtttgactttattttatctcatgttgtagaaatagttcatccataagc 76  Q
    |||||| ||||||||||||||||||  |||| ||||||||||| || |||||||    
T  14482192 aaaacaatttgactttattttatcttttgttatagaaatagtttatacataagc 14482139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 31751707 - 31751748
Alignment:
Q  91 cttattctataagctgtaaaataagttgtttatccaaacagg 132  Q
    ||||| |||||||||| ||| |||||||||||||||||||||    
T  31751707 cttatactataagctgcaaattaagttgtttatccaaacagg 31751748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 4389857 - 4389817
Alignment:
Q  97 ctataagctgtaaaataagttgtttatccaaacaggtcctt 137  Q
    |||||||||| |||||||||| |||||||||||||| ||||    
T  4389857 ctataagctgcaaaataagttatttatccaaacagggcctt 4389817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 39178386 - 39178435
Alignment:
Q  91 cttattctataagctgtaaaataagttgtttatccaaacaggtccttatt 140  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  39178386 cttatactataagctgtaaaataagttgtttatccaaacaggaccttatt 39178435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 47399454 - 47399412
Alignment:
Q  90 gcttattctataagctgtaaaataagttgtttatccaaacagg 132  Q
    |||||| |||||||||| ||| |||||||||||||||||||||    
T  47399454 gcttatcctataagctgcaaactaagttgtttatccaaacagg 47399412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 1965867 - 1965834
Alignment:
Q  97 ctataagctgtaaaataagttgtttatccaaaca 130  Q
    ||||||||||| ||||||||||||||||||||||    
T  1965867 ctataagctgtcaaataagttgtttatccaaaca 1965834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 24929483 - 24929438
Alignment:
Q  23 aaaacagtttgactttattttatctcatgttgtagaaatagttcat 68  Q
    ||||||||| |||||||||||||||  |||| ||||||||||||||    
T  24929483 aaaacagttagactttattttatcttttgttatagaaatagttcat 24929438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 42461217 - 42461172
Alignment:
Q  83 aataattgcttattctataagctgtaaaataagttgtttatccaaa 128  Q
    ||||| ||||||| |||||||||| ||| |||||||||||||||||    
T  42461217 aataagtgcttatcctataagctgaaaattaagttgtttatccaaa 42461172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 53422361 - 53422312
Alignment:
Q  14 gattatactaaaacagtttgactttattttatctcatgttgtagaaatag 63  Q
    |||||||| ||||| |||||| ||||||||||||  ||||||||||||||    
T  53422361 gattatacaaaaactgtttgaatttattttatcttgtgttgtagaaatag 53422312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 4212858 - 4212811
Alignment:
Q  84 ataattgcttattctataagctgtaaaataagttgtttatccaaacagg 132  Q
    ||||| |||| | |||||||||| |||||||||||||||||||||||||    
T  4212858 ataatcgcttgtgctataagctg-aaaataagttgtttatccaaacagg 4212811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 4471149 - 4471078
Alignment:
Q  35 ctttattttatctcatgttgtagaaatagttcatccataagcgc--atataataattgcttattctataagc 104  Q
    |||||||||||||  |||| || |||||||| || ||||||| |  ||||||||||||||||| ||||||||    
T  4471149 ctttattttatcttttgttataaaaatagtttatgcataagcacttatataataattgcttatgctataagc 4471078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 19039707 - 19039659
Alignment:
Q  84 ataattgcttattctataagctgtaaaataagttgtttatccaaacagg 132  Q
    |||||||| |||  ||||||||| ||| |||||||||||||||||||||    
T  19039707 ataattgcctatattataagctgcaaattaagttgtttatccaaacagg 19039659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 6593279 - 6593178
Alignment:
Q  34 actttattttatctcatgttgtagaaatagttcatccataagcgcatataa---taattgcttattctataagctgtaaaataagttgtttatccaaaca 130  Q
    ||||||||||||||  |||| ||||||| ||| || ||||||||| ||| |   ||| || |||| |||||||||||||| |||||||||||||||||||    
T  6593279 actttattttatcttttgttatagaaattgtttatacataagcgcgtatcaagataaatgattatgctataagctgtaaattaagttgtttatccaaaca 6593180  T
Q  131 gg 132  Q
    ||    
T  6593179 gg 6593178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 7907793 - 7907752
Alignment:
Q  97 ctataagctgtaaaataagttgtttatccaaacaggtcctta 138  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  7907793 ctataagttgtaaaataagttgtttatccaaacagggcctta 7907752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 38105020 - 38105055
Alignment:
Q  97 ctataagctgtaaaataagttgtttatccaaacagg 132  Q
    |||||||||| |||||||||||||||||||||||||    
T  38105020 ctataagctgcaaaataagttgtttatccaaacagg 38105055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 29117003 - 29117049
Alignment:
Q  16 ttatactaaaacagtttgactttattttatctcatgttgtagaaata 62  Q
    |||||| |||||||||||||||||||||||||  |||| ||||||||    
T  29117003 ttatacgaaaacagtttgactttattttatcttttgttatagaaata 29117049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 19177469 - 19177416
Alignment:
Q  23 aaaacagtttgactttattttatctcatgttgtagaaatagttcatccataagc 76  Q
    ||||||||| ||||| |||||||||  |||||||||||||||| || |||||||    
T  19177469 aaaacagttagacttaattttatcttctgttgtagaaatagtttatacataagc 19177416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 28586846 - 28586887
Alignment:
Q  23 aaaacagtttgactttattttatctcatgttgtagaaatagt 64  Q
    |||||||||||||||||||||||||  |||| ||||||||||    
T  28586846 aaaacagtttgactttattttatcttttgttatagaaatagt 28586887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 34590379 - 34590420
Alignment:
Q  91 cttattctataagctgtaaaataagttgtttatccaaacagg 132  Q
    ||||| |||||||||| ||||||||| |||||||||||||||    
T  34590379 cttatcctataagctgcaaaataagtcgtttatccaaacagg 34590420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 36646230 - 36646177
Alignment:
Q  23 aaaacagtttgactttattttatctcatgttgtagaaatagttcatccataagc 76  Q
    ||||||||||||||||| ||||||| ||||| || |||||||| || |||||||    
T  36646230 aaaacagtttgactttagtttatcttatgttataaaaatagtttatgcataagc 36646177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 37063154 - 37063207
Alignment:
Q  23 aaaacagtttgactttattttatctcatgttgtagaaatagttcatccataagc 76  Q
    |||| ||||||||||||||||||||  |||| ||||||||||| || |||||||    
T  37063154 aaaatagtttgactttattttatcttttgttatagaaatagtttatacataagc 37063207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 14295496 - 14295456
Alignment:
Q  23 aaaacagtttgactttattttatctcatgttgtagaaatag 63  Q
    |||||||||||||||||||||||||  |||| |||||||||    
T  14295496 aaaacagtttgactttattttatcttttgttatagaaatag 14295456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 28578882 - 28578842
Alignment:
Q  23 aaaacagtttgactttattttatctcatgttgtagaaatag 63  Q
    ||||||| ||||||||||||||||| ||||| |||||||||    
T  28578882 aaaacagcttgactttattttatcttatgttatagaaatag 28578842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 34672893 - 34672948
Alignment:
Q  84 ataattgcttattctataagctgtaaaataagttgtttatccaaacaggtccttat 139  Q
    |||| ||||||| |||||||||| ||| |||| |||||||||||||||||||||||    
T  34672893 ataagtgcttatgctataagctgaaaattaagctgtttatccaaacaggtccttat 34672948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 35331065 - 35331022
Alignment:
Q  89 tgcttattctataagctgtaaaataagttgtttatccaaacagg 132  Q
    ||||||| |||||||||||||| |||||||||| ||||||||||    
T  35331065 tgcttatgctataagctgtaaattaagttgtttttccaaacagg 35331022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 425971 - 426013
Alignment:
Q  90 gcttattctataagctgtaaaataagttgtttatccaaacagg 132  Q
    |||||| |||||||||| |||||||||| ||||||||||||||    
T  425971 gcttatgctataagctgcaaaataagttatttatccaaacagg 426013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 30134046 - 30133932
Alignment:
Q  16 ttatactaaaacagtttgactttattttatctcatgttgtagaaatagttcatccataagcgcatataataattgcttattctataagctgtaaaataag 115  Q
    |||||| ||||||  |||||||||||||||||  ||||||| |||||| | || ||||| | | ||| ||||  |||||| ||||||||  | || | ||    
T  30134046 ttatacgaaaacaagttgactttattttatcttttgttgtaaaaatagcttatacataaacacttatgataagcgcttatgctataagcatttaattgag 30133947  T
Q  116 ttgtttatccaaaca 130  Q
    |||||||||||||||    
T  30133946 ttgtttatccaaaca 30133932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 35536097 - 35536044
Alignment:
Q  23 aaaacagtttgactttattttatctcatgttgtagaaatagttcatccataagc 76  Q
    |||||| |||||||||||||||||| ||||| ||||||||| | || |||||||    
T  35536097 aaaacaatttgactttattttatcttatgttatagaaatagcttatacataagc 35536044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 3610813 - 3610873
Alignment:
Q  16 ttatactaaaacagtttgactttattttatctcatgttgtagaaatagttcatccataagc 76  Q
    |||||| ||||||||||| ||| |||||||||  |||||||||||||| | || |||||||    
T  3610813 ttataccaaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagc 3610873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 12835017 - 12835057
Alignment:
Q  23 aaaacagtttgactttattttatctcatgttgtagaaatag 63  Q
    |||||| ||||||||||||||||||  ||||||||||||||    
T  12835017 aaaacaatttgactttattttatcttttgttgtagaaatag 12835057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 33192183 - 33192141
Alignment:
Q  23 aaaacagtttgactttattttatctcatgttgtagaaatagtt 65  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  33192183 aaaacagtttgactttattttatcttatgttatagaaatagtt 33192141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 12140478 - 12140444
Alignment:
Q  98 tataagctgtaaaataagttgtttatccaaacagg 132  Q
    ||||||||| |||||||||||||||||||||||||    
T  12140478 tataagctgcaaaataagttgtttatccaaacagg 12140444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 12313321 - 12313363
Alignment:
Q  89 tgcttattctataagctgtaaaataagttgtttatccaaacag 131  Q
    ||||||| |||||||||| |||||||| |||||||||||||||    
T  12313321 tgcttatactataagctgcaaaataagatgtttatccaaacag 12313363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 28251939 - 28251972
Alignment:
Q  12 tagattatactaaaacagtttgactttattttat 45  Q
    |||||||||| |||||||||||||||||||||||    
T  28251939 tagattatacaaaaacagtttgactttattttat 28251972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 11863824 - 11863792
Alignment:
Q  108 aaaataagttgtttatccaaacaggtccttatt 140  Q
    ||||||||||||||||||| |||||||||||||    
T  11863824 aaaataagttgtttatccagacaggtccttatt 11863792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 13866890 - 13866826
Alignment:
Q  12 tagattatactaaaacagtttgactttattttatctcatgttgtagaaatagttcatccataagc 76  Q
    |||||||||  ||||||||||||||| |||||||||  || | ||||||||||| || |||||||    
T  13866890 tagattatataaaaacagtttgacttaattttatcttttgctatagaaatagtttatacataagc 13866826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 34958319 - 34958207
Alignment:
Q  22 taaaacagtttgactttattttatctcatgttgtagaaatagttcatccataagcgc--atataataattgcttattctataagctgtaaaataagttgt 119  Q
    |||||||| |||||||||||||||||  |||| ||||||||||| || |||||| ||  |||| ||    |||||| |||||||||| | |||||| |||    
T  34958319 taaaacagcttgactttattttatcttgtgttatagaaatagtttattcataagtgcttatatgatgcacgcttatgctataagctgcagaataagctgt 34958220  T
Q  120 ttatccaaacagg 132  Q
    ||| |||||||||    
T  34958219 ttaaccaaacagg 34958207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 34034076 - 34034040
Alignment:
Q  95 ttctataagctgtaaaataagttgtttatccaaacagg 132  Q
    |||||||||||| |||||||||||||||||||||||||    
T  34034076 ttctataagctg-aaaataagttgtttatccaaacagg 34034040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 3776781 - 3776821
Alignment:
Q  92 ttattctataagctgtaaaataagttgtttatccaaacagg 132  Q
    |||| |||||||| ||||| |||||||||||||||||||||    
T  3776781 ttatactataagcagtaaattaagttgtttatccaaacagg 3776821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 34954083 - 34954031
Alignment:
Q  13 agattatactaaaacagtttgactttattttatctcatgttgtagaaatagtt 65  Q
    ||||||||  ||||||| |||||||||||||||||  |||| |||||||||||    
T  34954083 agattatatgaaaacagcttgactttattttatcttgtgttatagaaatagtt 34954031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 46434750 - 46434782
Alignment:
Q  98 tataagctgtaaaataagttgtttatccaaaca 130  Q
    ||||||||| |||||||||||||||||||||||    
T  46434750 tataagctgcaaaataagttgtttatccaaaca 46434782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 49586996 - 49587036
Alignment:
Q  23 aaaacagtttgactttattttatctcatgttgtagaaatag 63  Q
    |||||||||||||||||||||||||  |||| |||||||||    
T  49586996 aaaacagtttgactttattttatcttttgttatagaaatag 49587036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 10280562 - 10280521
Alignment:
Q  90 gcttattctataagctgtaaaataagttgtttatccaaacag 131  Q
    |||||| |||||||||||||| ||||||||||||||||||||    
T  10280562 gcttatgctataagctgtaaactaagttgtttatccaaacag 10280521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 4699683 - 4699745
Alignment:
Q  14 gattatactaaaacagtttgactttattttatctcatgttgtagaaatagttcatccataagc 76  Q
    |||||||| |||| ||||||||||||||| ||||  |||||||||||||| | || |||||||    
T  4699683 gattatacaaaaatagtttgactttatttaatcttgtgttgtagaaatagcttattcataagc 4699745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 33527216 - 33527282
Alignment:
Q  12 tagattatactaaaacagtttgactttattttatctcatgttgtagaaatagttcatccataagcgc 78  Q
    |||||||||  |||||||||||||| ||||||||||  |||| ||||||||| | || |||||||||    
T  33527216 tagattatatgaaaacagtttgactgtattttatcttttgttttagaaatagcttattcataagcgc 33527282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 51190749 - 51190716
Alignment:
Q  109 aaataagttgtttatccaaacaggtccttattga 142  Q
    |||||||||||||||||||||||| |||||||||    
T  51190749 aaataagttgtttatccaaacaggaccttattga 51190716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 18327266 - 18327302
Alignment:
Q  97 ctataagctgtaaaataagttgtttatccaaacaggt 133  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  18327266 ctataagctgcaaaataaattgtttatccaaacaggt 18327302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 35058900 - 35058948
Alignment:
Q  84 ataattgcttattctataagctgtaaaataagttgtttatccaaacagg 132  Q
    |||| ||||||| ||||||| || |||||||| ||||||||||||||||    
T  35058900 ataagtgcttatgctataagttgcaaaataagctgtttatccaaacagg 35058948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 43029482 - 43029534
Alignment:
Q  24 aaacagtttgactttattttatctcatgttgtagaaatagttcatccataagc 76  Q
    ||||||||||| ||||||||||||  |||||||||||||| | || |||||||    
T  43029482 aaacagtttgaatttattttatcttttgttgtagaaataggttatacataagc 43029534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 48064229 - 48064189
Alignment:
Q  90 gcttattctataagctgtaaaataagttgtttatccaaaca 130  Q
    |||||| |||||||||| ||| |||||||||||||||||||    
T  48064229 gcttatgctataagctgcaaattaagttgtttatccaaaca 48064189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 24626198 - 24626159
Alignment:
Q  97 ctataagctgtaaaataagttgtttatccaaacaggtcctt 137  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  24626198 ctataagctgtaaa-taagttgtttatccaaacaggtcctt 24626159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 9027574 - 9027527
Alignment:
Q  16 ttatactaaaacagtttgactttattttatctcatgttgtagaaatag 63  Q
    ||||| ||||||||||||||||||||||||||  | ||||||||||||    
T  9027574 ttatattaaaacagtttgactttattttatcttctattgtagaaatag 9027527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 10657250 - 10657132
Alignment:
Q  14 gattatactaaaacagtttgactttattttatctcatgttgtagaaatagttcatccataagcgcatata--ataattgcttattctataagctgtaaaa 111  Q
    |||||| | ||| |||||||||||||||||||||| | || ||||| ||| | || | |||| || ||||  || |||| |||| ||||| |||| ||||    
T  10657250 gattatgcgaaagcagtttgactttattttatctcgtcttatagaagtagcttattcgtaagtgcttatatgattattgtttatgctatatgctgcaaaa 10657151  T
Q  112 taagttgtttatccaaaca 130  Q
    |||||||||||||| ||||    
T  10657150 taagttgtttatccgaaca 10657132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 7946023 - 7946065
Alignment:
Q  90 gcttattctataagctgtaaaataagttgtttatccaaacagg 132  Q
    |||||| |||||||||  |||||||||||||||||||||||||    
T  7946023 gcttatgctataagctacaaaataagttgtttatccaaacagg 7946065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 26550370 - 26550404
Alignment:
Q  97 ctataagctgtaaaataagttgtttatccaaacag 131  Q
    ||||||||||||||||| |||||||||||||||||    
T  26550370 ctataagctgtaaaatatgttgtttatccaaacag 26550404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University