View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_498 (Length: 207)
Name: NF10140A_low_498
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_498 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 11689374 - 11689202
Alignment:
| Q |
19 |
gtatggagttgctattattttctaccatgaagtgtaaacattatactcacccgatatcaacaacggtcgatgcaggtaacaagaagtgttgacactgaat |
118 |
Q |
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| T |
11689374 |
gtatggagttgctagtatgttttatcattaagtgtaaacattatactcactcgacatctacaatggtcgatgtaggtaacaagaagtgttgacactgagt |
11689275 |
T |
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| Q |
119 |
atggaaagctaagtccacaggaacagaagactatggacgccattgtccgggctaggtgactctgatgtagttt |
191 |
Q |
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| T |
11689274 |
atggaaaactaagtccacaggaacagaagactatggatgccattgtccgggctaggtgactctgatgtagttt |
11689202 |
T |
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Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 7473963 - 7474039
Alignment:
| Q |
89 |
tgcaggtaacaagaagtgttgacactgaatatggaaagctaagtccacaggaacagaagactatggacgccattgtc |
165 |
Q |
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| T |
7473963 |
tgcaggtaacaagaagtattgacactgaacatggaaggctcagtccacaggagcagaagactgtggatgccattgtc |
7474039 |
T |
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