View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_503 (Length: 206)
Name: NF10140A_low_503
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_503 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 22291959 - 22292126
Alignment:
| Q |
15 |
tgatatgaagggtgaggcttctggtgaattcttgaggtcaaatacaacaacaaaattagtggatccgattcaatcaactattaccctgttctcatcagag |
114 |
Q |
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| T |
22291959 |
tgatgtgaagggtgaggcttctggtgaattcttgaagtcaaatacaacaacaaaattagtggatccgattcaatcaactattaccctgttctcatcagag |
22292058 |
T |
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| Q |
115 |
acccaaatgtgattgtgttgtgaatctaattgcaaatttacataattaatgaatggaattgaagaaac |
182 |
Q |
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| T |
22292059 |
ccccaaatgtgattgtgttgtgaatctaattgcaaatttacaaaattaatgaatgcaattgaagaaac |
22292126 |
T |
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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 15434052 - 15434152
Alignment:
| Q |
82 |
attcaatcaactattaccctgttctcatcagagacccaaatgtgattgtgttgtgaatctaattgcaaatttacataattaatgaatggaattgaagaaa |
181 |
Q |
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| T |
15434052 |
attcaatcaactattagcctgttctcatcagagacccaaatctgattctgttgtgaatctaattgcaaatttacaaaattaatgaatggaattgaagaaa |
15434151 |
T |
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| Q |
182 |
c |
182 |
Q |
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| T |
15434152 |
c |
15434152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 17682554 - 17682459
Alignment:
| Q |
88 |
tcaactattaccctgttctcatcagagacccaaatgtgattgtgttgtgaatctaattgcaaattta-cataattaatgaatggaattgaagaaac |
182 |
Q |
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|||||||| ||||| ||||| |||||||||||||| ||| ||||||||||| ||||||||||||||| | | |||||||||||||||||||||| |
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| T |
17682554 |
tcaactatgaccctattctcgtcagagacccaaatctgactgtgttgtgaacctaattgcaaatttattaccaataatgaatggaattgaagaaac |
17682459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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