View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_504 (Length: 206)
Name: NF10140A_low_504
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_504 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 14539796 - 14539611
Alignment:
| Q |
11 |
atggacatcaaatgcattaaacatagatataacaaaatgnnnnnnnnnngacggaagatttaactaaatgttatcatggggtctgtgtaacttgttgttg |
110 |
Q |
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| T |
14539796 |
atggacagcaaatgcattaaacatagatataacaaaatgttttttttt-gacggaagatttaactaaatgttatcatggggtctgtataacttgttgttg |
14539698 |
T |
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| Q |
111 |
cacgtgcacattcatatcttcggtttgaggatagcactctgtgacagaagtctccttgacaaaaccttaggcttctcatatattctt |
197 |
Q |
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| T |
14539697 |
cacgtgcacattcatatcttcggtttgaggatagcactctgtgacagaagtctccttgacaaaaccttaggcttctcatattttctt |
14539611 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 14544580 - 14544517
Alignment:
| Q |
134 |
tttgaggatagcactctgtgacagaagtctccttgacaaaaccttaggcttctcatatattctt |
197 |
Q |
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| T |
14544580 |
tttgcggatagcactctgtgacagaagcctccttgacaaaaccttaggcttctcatattttctt |
14544517 |
T |
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