View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_511 (Length: 203)

Name: NF10140A_low_511
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_511
NF10140A_low_511
[»] chr3 (3 HSPs)
chr3 (58-159)||(26130578-26130679)
chr3 (61-159)||(23602813-23602911)
chr3 (70-145)||(8594821-8594896)
[»] chr4 (4 HSPs)
chr4 (58-159)||(22340129-22340230)
chr4 (59-159)||(29124010-29124110)
chr4 (61-145)||(15706134-15706217)
chr4 (58-145)||(4303773-4303860)
[»] chr7 (1 HSPs)
chr7 (100-159)||(22542872-22542931)
[»] chr1 (1 HSPs)
chr1 (58-145)||(49369337-49369424)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 26130578 - 26130679
Alignment:
Q  58 ttctagcctttctgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtgttttaatatattattcttagtttc 157  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  26130578 ttctagcctttctgtattgtaactaactgctttcagtcccttttggcacgccttgtgctttgagggactgtttgtgttttaatatatttttcttagtttc 26130677  T
Q  158 tt 159  Q
    ||    
T  26130678 tt 26130679  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 23602911 - 23602813
Alignment:
Q  61 tagcctttctgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtgttttaatatattattcttagtttctt 159  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  23602911 tagcctttccgtattgtaactaactgttttcagtcccttttggcacaccttgtgctttgaggaactgtttgtgttttaatatattattcttagtttctt 23602813  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 8594896 - 8594821
Alignment:
Q  70 tgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtg-ttttaatatatt 145  Q
    |||| ||||||||||| |||| || | |||||| ||| |||||||| ||||||||| ||||||| ||||||||||||    
T  8594896 tgtattgtaactaactatttttaggctcttttgacacaccttgtgc-ttgagggactgtttgtgtttttaatatatt 8594821  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 22340230 - 22340129
Alignment:
Q  58 ttctagcctttctgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtgttttaatatattattcttagtttc 157  Q
    |||||||||| ||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  22340230 ttctagccttactgtattgtaactaactgttttcagtcccttttgacacaccttgtgctttgagggactgtttgcgttttaatatattattcttagtttc 22340131  T
Q  158 tt 159  Q
    ||    
T  22340130 tt 22340129  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 29124010 - 29124110
Alignment:
Q  59 tctagcctttctgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtgttttaatatattattcttagtttct 158  Q
    ||||||||| ||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||| |||||    
T  29124010 tctagccttactgtattgtaactaactgttttcagttccttttggcacaccttatgctttgagggactgtttgtgttttaatatattattcttaatttct 29124109  T
Q  159 t 159  Q
    |    
T  29124110 t 29124110  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 15706134 - 15706217
Alignment:
Q  61 tagcctttctgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtgttttaatatatt 145  Q
    ||||||| ||||| ||||||||||| |||||||| ||||||||||| |||||| | |||||||||||| ||| ||||||||||||    
T  15706134 tagccttactgtattgtaactaactattttcagttccttttggcacaccttgtac-ttgagggaccgtatgtattttaatatatt 15706217  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 4303773 - 4303860
Alignment:
Q  58 ttctagcctttctgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtg-ttttaatatatt 145  Q
    |||||||||| |||||||||||||||||  |||||||  |||||||||   ||||||| ||||||||  || |||| ||||||||||||    
T  4303773 ttctagccttactgtactgtaactaacttatttcagtttcttttggcaaatcttgtgc-ttgagggattgtatgtgtttttaatatatt 4303860  T

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Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 22542931 - 22542872
Alignment:
Q  100 ttggcacgccttgtgctttgagggaccgtttgtgttttaatatattattcttagtttctt 159  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22542931 ttggcacaccttgtgctttgagggactgtttgtgttttaatatattattcttagtttctt 22542872  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 49369424 - 49369337
Alignment:
Q  58 ttctagcctttctgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtg-ttttaatatatt 145  Q
    |||||||||| ||||| ||||||||||| ||||||||  |||||||||| |||| ||| || |||||| || |||| ||||||||||||    
T  49369424 ttctagccttactgtattgtaactaactattttcagtttcttttggcacaccttatgc-ttaagggactgtatgtgtttttaatatatt 49369337  T

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