View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_512 (Length: 203)
Name: NF10140A_low_512
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_512 |
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| [»] scaffold0039 (1 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 8186754 - 8186587
Alignment:
| Q |
19 |
atcaataccccagcaatcaaatacctccacttcaagaatactttgtaggggcatctcatttcgctttgatattgatccggttctttgacattcatcgcaa |
118 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8186754 |
atcaataccccaacaatcaaatacctccacttcaagaatactttgtaagggcatctcatttcgctttgatattgatccggttctttgacattcatcgcaa |
8186655 |
T |
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| Q |
119 |
aacttgcaatgagtgtaggcatctttgaaaagtgtcggccaatagaaaccggattgaagcacttttgt |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8186654 |
aacttgcaatgagtgtaggcatctttgaaaagtgtcggccaatagaaaccggattgaagcacttttgt |
8186587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 14293979 - 14294146
Alignment:
| Q |
19 |
atcaataccccagcaatcaaatacctccacttcaagaatactttgtaggggcatctcatttcgctttgatattgatccggttctttgacattcatcgcaa |
118 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14293979 |
atcaataccccaacaatcaaatacctccacttcaagaatactttgtaagggcatctcatttcgctttgatattgatccggttctttgacattcatcgcaa |
14294078 |
T |
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| Q |
119 |
aacttgcaatgagtgtaggcatctttgaaaagtgtcggccaatagaaaccggattgaagcacttttgt |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14294079 |
aacttgcaatgagtgtaggcatctttgaaaagtgtcggccaatagaaaccggattgaagcacttttgt |
14294146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 10856142 - 10855976
Alignment:
| Q |
19 |
atcaataccccagcaatcaaatacctccacttcaagaatactttgtaggggcatctcatttcgctttgatattgatccggttctttgacattcatcgcaa |
118 |
Q |
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|
|||||||||||| |||||||| || |||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| ||| |
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| T |
10856142 |
atcaataccccaacaatcaaacacttccacttcaagaatactttgtataggcatttcattccgctttgacattgatccggttctttgacattcatcacaa |
10856043 |
T |
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| Q |
119 |
aacttgcaatgagtgtaggcatctttgaaaagtgtcggccaatagaaaccggattgaagcacttttg |
185 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||| |
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| T |
10856042 |
aacttgcaatgagtgtaagcatctttgaaaagtgttggccaatagaaaccggattggagtacttttg |
10855976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 10853170 - 10853336
Alignment:
| Q |
19 |
atcaataccccagcaatcaaatacctccacttcaagaatactttgtaggggcatctcatttcgctttgatattgatccggttctttgacattcatcgcaa |
118 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||||||||||| || ||||| ||||| |||||||| |||||||||||||||| ||||||||| ||| |
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| T |
10853170 |
atcaataccccaacaatcaaacacttccacttcaagaatactttatataggcatttcattccgctttgacattgatccggttctttaacattcatcacaa |
10853269 |
T |
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| Q |
119 |
aacttgcaatgagtgtaggcatctttgaaaagtgtcggccaatagaaaccggattgaagcacttttg |
185 |
Q |
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||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| || ||||||| |
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| T |
10853270 |
aacttgcaatgagtgtaagcatctttgaaaagttttggccaatagaaaccggattggagtacttttg |
10853336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 4732233 - 4732066
Alignment:
| Q |
19 |
atcaataccccagcaatcaaatacctccacttcaagaatactttgtaggggcatctcatttcgctttgatattgatccggttctttgacattcatcgcaa |
118 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4732233 |
atcaataccccaacaatcaaatacctccacttcaagaatactttgtaagggcatctcatttcgctttgatattgatccggttctttgacattcatcgcaa |
4732134 |
T |
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| Q |
119 |
aacttgcaatgagtgtaggcatctttgaaaagtgtcggccaatagaaaccggattgaagcacttttgt |
186 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4732133 |
aacttgcaatgagtgtaggcatctttgaaaagtgtcggccaatagaaaccagattgaagcacttttgt |
4732066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 45022141 - 45022308
Alignment:
| Q |
19 |
atcaataccccagcaatcaaatacctccacttcaagaatactttgtaggggcatctcatttcgctttgatattgatccggttctttgacattcatcgcaa |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45022141 |
atcaataccccaacaatcaaatacctccacttcaagaatactttgtaagggcatctcatttcgctttgatattgatccggttctttgacattcatcgcaa |
45022240 |
T |
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| Q |
119 |
aacttgcaatgagtgtaggcatctttgaaaagtgtcggccaatagaaaccggattgaagcacttttgt |
186 |
Q |
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|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45022241 |
aacttgcaatgagtgtaggcatccttgaagagtgtcggccaatagaaaccggattgaagcacttttgt |
45022308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 5343 - 5177
Alignment:
| Q |
19 |
atcaataccccagcaatcaaatacctccacttcaagaatactttgtaggggcatctcatttcgctttgatattgatccggttctttgacattcatcgcaa |
118 |
Q |
| |
|
||||||||||||||||||||| || | |||||||||||||||||||| ||||| ||||| |||||||| |||||||| |||||| ||||||||| ||| |
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| T |
5343 |
atcaataccccagcaatcaaacacttatacttcaagaatactttgtagaggcatttcattccgctttgacattgatccaattctttaacattcatcacaa |
5244 |
T |
|
| Q |
119 |
aacttgcaatgagtgtaggcatctttgaaaagtgtcggccaatagaaaccggattgaagcacttttg |
185 |
Q |
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|||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||| |
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| T |
5243 |
aacttggaatgagtgtaagcatctttgaaaagtgttggccaatagaaaccggattggagtacttttg |
5177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 180200 - 180154
Alignment:
| Q |
137 |
gcatctttgaaaagtgtcggccaatagaaaccggattgaagcacttt |
183 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| |||||| ||||| |
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| T |
180200 |
gcatctttgaaaagtgttggccaatagaagccggcttgaagaacttt |
180154 |
T |
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