View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_517 (Length: 202)
Name: NF10140A_low_517
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_517 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 32062496 - 32062671
Alignment:
| Q |
14 |
gacatcaacaacatgtttgggaagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcg |
113 |
Q |
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| T |
32062496 |
gacataaacaacatgtttgggaagccaatagactttgttagaaagaaaaggtcactgaagcaagagaatgcaccggagaacaatagtggaaaggaattcg |
32062595 |
T |
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| Q |
114 |
gtgggttttcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttcttcg |
189 |
Q |
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| T |
32062596 |
gtgggttttcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcg |
32062671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 32062652 - 32062758
Alignment:
| Q |
35 |
aagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttttcaatccttgccg |
134 |
Q |
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| T |
32062652 |
aagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcgg |
32062751 |
T |
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| Q |
135 |
atgatga |
141 |
Q |
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| T |
32062752 |
atgatga |
32062758 |
T |
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