View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_519 (Length: 202)

Name: NF10140A_low_519
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_519
NF10140A_low_519
[»] chr7 (5 HSPs)
chr7 (12-180)||(44225768-44225936)
chr7 (31-139)||(23943074-23943182)
chr7 (71-177)||(24503823-24503929)
chr7 (60-141)||(26153558-26153639)
chr7 (12-63)||(10526787-10526838)
[»] chr5 (8 HSPs)
chr5 (12-180)||(38739873-38740041)
chr5 (11-180)||(20883560-20883729)
chr5 (12-180)||(35049366-35049534)
chr5 (31-146)||(17344270-17344385)
chr5 (12-141)||(26506141-26506270)
chr5 (13-146)||(6374692-6374825)
chr5 (13-141)||(16109402-16109530)
chr5 (14-177)||(33937037-33937200)
[»] chr2 (6 HSPs)
chr2 (12-180)||(19379513-19379681)
chr2 (12-177)||(35004162-35004327)
chr2 (52-149)||(26224764-26224861)
chr2 (12-169)||(22728411-22728568)
chr2 (31-149)||(9827288-9827406)
chr2 (52-106)||(28758869-28758923)
[»] chr6 (1 HSPs)
chr6 (12-180)||(1031026-1031194)
[»] chr1 (6 HSPs)
chr1 (13-180)||(30703645-30703812)
chr1 (13-180)||(12067354-12067519)
chr1 (12-180)||(1180801-1180969)
chr1 (12-180)||(25818465-25818632)
chr1 (13-177)||(7318340-7318504)
chr1 (31-150)||(23943001-23943120)
[»] chr3 (4 HSPs)
chr3 (22-180)||(20514236-20514394)
chr3 (13-130)||(27934175-27934292)
chr3 (31-141)||(53768218-53768328)
chr3 (12-81)||(30531215-30531284)
[»] chr4 (6 HSPs)
chr4 (12-167)||(50006894-50007049)
chr4 (13-180)||(50334663-50334816)
chr4 (12-109)||(1938728-1938825)
chr4 (31-125)||(156706-156800)
chr4 (13-101)||(41784788-41784876)
chr4 (52-150)||(18486410-18486505)
[»] chr8 (5 HSPs)
chr8 (13-177)||(15893037-15893198)
chr8 (32-141)||(24619141-24619250)
chr8 (31-141)||(5016046-5016156)
chr8 (31-141)||(5075604-5075714)
chr8 (19-63)||(33228392-33228436)
[»] scaffold0015 (1 HSPs)
scaffold0015 (52-141)||(32945-33034)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 44225936 - 44225768
Alignment:
Q  12 ggacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctcca 111  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44225936 ggacataaagatgtaaaaggttattttcaaccatcacgcgaaacatgtaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcttcca 44225837  T
Q  112 acggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataatatgttctgtg 180  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44225836 acggtcctcttccttatcctcccccaagtccacgcctggaacttgtactactacataatatgttctgtg 44225768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 23943182 - 23943074
Alignment:
Q  31 gttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaacggtcctcttccttatcc 130  Q
    |||||| |||||||| || | ||||||| ||||||| || |||||||||||||  ||||||||| ||||||||||| ||||   ||||||||||||||||    
T  23943182 gttattctcaaccattaccctaaacatgaaatcaacctcgctatcatctttgagaagttgtggataatacacggtcttccagaagtcctcttccttatcc 23943083  T
Q  131 tcccccaag 139  Q
    |||||||||    
T  23943082 tcccccaag 23943074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 24503929 - 24503823
Alignment:
Q  71 ctatcatctttgactagttgtggaaaatacacggtcctccaacggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataat 170  Q
    |||||||||||||  |||||||||||||| |||||| | |||   |||||||||||||||||||||||||| |||| ||| || | ||||| ||||| |     
T  24503929 ctatcatctttgagaagttgtggaaaatatacggtctttcaaaattcctcttccttatcctcccccaagtccacgcttggcacatctactattacatcac 24503830  T
Q  171 atgttct 177  Q
    |||||||    
T  24503829 atgttct 24503823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 26153639 - 26153558
Alignment:
Q  60 aatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaacggtcctcttccttatcctcccccaagtc 141  Q
    |||||| ||| |||||||||| ||  |||||||||||||| |||||| |||||  ||| ||||| |||||||||||||||||    
T  26153639 aatcaatgtcgctatcatcttcgataagttgtggaaaatatacggtcttccaaaagtcatcttctttatcctcccccaagtc 26153558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 10526787 - 10526838
Alignment:
Q  12 ggacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatc 63  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||| ||||    
T  10526787 ggacataaagaagtaaaaggttattttcaaccatcacgcgaaacatgtaatc 10526838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 38740041 - 38739873
Alignment:
Q  12 ggacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctcca 111  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38740041 ggacataaagatgtaaaagattattttcaaccatcacacgaaacatgtaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcttcca 38739942  T
Q  112 acggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataatatgttctgtg 180  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38739941 acggtcctcttccttatcctcccccaagtccacgcctggaacttgtactactacataatatgttctgtg 38739873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 20883560 - 20883729
Alignment:
Q  11 tggacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctcc 110  Q
    ||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20883560 tggacataaagatgtaaaaggttattttcaaccatctcgcgaaacatgtaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcttcc 20883659  T
Q  111 aacggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataatatgttctgtg 180  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  20883660 aacggtcctcttccttatcctcccccaagtccacgcctgaaacttgtactactacataatatgttatgtg 20883729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 35049366 - 35049534
Alignment:
Q  12 ggacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctcca 111  Q
    |||||| |||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  35049366 ggacataaagatgtaaaagattattttcaaccatcacgcgaaacatgtaatcaacgtcactatcatctttgactagttgtggaaaatacgcggtcttcca 35049465  T
Q  112 acggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataatatgttctgtg 180  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  35049466 acggtcctcttccttatcctcccacaagtccacgcctggaacttgtactactacataatatgttctgtg 35049534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 17344385 - 17344270
Alignment:
Q  31 gttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaacggtcctcttccttatcc 130  Q
    |||||||||||||||||||||||||||| ||||| ||||  ||||||||| ||| ||||||||||||||||||||| | |||  || |||||||||||||    
T  17344385 gttattttcaaccatcacacgaaacatgtaatcagcgtcggtatcatcttcgacaagttgtggaaaatacacggtctttcaaaagttctcttccttatcc 17344286  T
Q  131 tcccccaagtcaacgc 146  Q
    ||||||||||| ||||    
T  17344285 tcccccaagtccacgc 17344270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 26506141 - 26506270
Alignment:
Q  12 ggacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctcca 111  Q
    |||||| ||||||||||  |||||||||||||||||| | ||||||| || ||||||| |||||||||| ||| ||||||||||||||||||||| | ||    
T  26506141 ggacataaagatgtaaagtgttattttcaaccatcacgctaaacatgtaagcaacgtcgctatcatcttcgacaagttgtggaaaatacacggtctttca 26506240  T
Q  112 acggtcctcttccttatcctcccccaagtc 141  Q
    |  || |||||| |||||||||| ||||||    
T  26506241 aaagtgctcttctttatcctccctcaagtc 26506270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 6374825 - 6374692
Alignment:
Q  13 gacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaa 112  Q
    ||||| |||||||||||  ||||||| |||||| |  | ||||||| |||||||||| || ||||||||||| ||||||||| |||| |||||| || ||    
T  6374825 gacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgctgtcatctttgacaagttgtggataatatacggtcttcaaa 6374726  T
Q  113 cggtcctcttccttatcctcccccaagtcaacgc 146  Q
       |||| ||||||||||||||||||||| ||||    
T  6374725 aaatcctattccttatcctcccccaagtccacgc 6374692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 16109530 - 16109402
Alignment:
Q  13 gacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaa 112  Q
    ||||| |||||| |||| |||||| ||||||||||| | ||| ||| || |||| || |||||||||||||  |||| |||| ||||||||||| |||||    
T  16109530 gacataaagatggaaaatgttattctcaaccatcacgctaaatatgtaagcaacatcgctatcatctttgagaagttatggataatacacggtcttccaa 16109431  T
Q  113 cggtcctcttccttatcctcccccaagtc 141  Q
       ||||||||||||||||||| ||||||    
T  16109430 aaatcctcttccttatcctccctcaagtc 16109402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 177
Target Start/End: Complemental strand, 33937200 - 33937037
Alignment:
Q  14 acatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaac 113  Q
    |||| |||| ||||||  |||||||||||||| |  | ||||||| |||||| ||||||||||| || ||  |||||||||||||| |  ||| |||||     
T  33937200 acataaagaagtaaaatattattttcaaccattaatctaaacatgtaatcaatgtcactatcattttcgataagttgtggaaaatatatcgtcttccaaa 33937101  T
Q  114 ggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataatatgttct 177  Q
     ||||||||| |||||||||| |||||| |||  ||  || ||||||||||||| | |||||||    
T  33937100 agtcctcttctttatcctccctcaagtccacgtttgacacatgtactactacatgagatgttct 33937037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 9e-72; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 19379681 - 19379513
Alignment:
Q  12 ggacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctcca 111  Q
    |||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19379681 ggacataaagatgtaaaaggttattttcaagcatcacgcgaaacatgtaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcttcca 19379582  T
Q  112 acggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataatatgttctgtg 180  Q
    |||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  19379581 acggtcatcttccttatcctcccccaagcccacgcctggaacttgtactactacataatatgttctgtg 19379513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 35004327 - 35004162
Alignment:
Q  12 ggacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctcca 111  Q
    |||||| |||||||| || |||||| ||||||||||| ||||||||| |||||||||| ||||||| |||||| ||||||| ||||||||||||| ||||    
T  35004327 ggacataaagatgtagaatgttattctcaaccatcacgcgaaacatgtaatcaacgtcgctatcatatttgacaagttgtgaaaaatacacggtcttcca 35004228  T
Q  112 acggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataatatgttct 177  Q
    |  ||| ||||||||||||||||||||||| || ||||| |||||||||||||||||| |||||||    
T  35004227 aaagtcttcttccttatcctcccccaagtccactcctggcacttgtactactacataacatgttct 35004162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 26224764 - 26224861
Alignment:
Q  52 aaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaacggtcctcttccttatcctcccccaagtcaacgcctg 149  Q
    ||||||| ||||||||||||||||||||| ||| |||| | ||||||||| |||| |||||  |||||||||||||||||| |||||||| |||||||    
T  26224764 aaacatgtaatcaacgtcactatcatcttcgacaagttctagaaaatacaaggtcttccaaaagtcctcttccttatcctctcccaagtccacgcctg 26224861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 22728411 - 22728568
Alignment:
Q  12 ggacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctcca 111  Q
    |||||| ||||||||||| |||||||||||  || |  | |||||||  |||||| |  |||||||||||||  ||| ||||||||||||| ||| ||||    
T  22728411 ggacataaagatgtaaaatgttattttcaataattaggctaaacatgacatcaacattgctatcatctttgagaagtagtggaaaatacacagtcttcca 22728510  T
Q  112 acggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataa 169  Q
    |  |||||||||||| |||||||||||||| |||  ||| |||||||| || ||||||    
T  22728511 aaagtcctcttccttctcctcccccaagtccacggttggcacttgtacaacgacataa 22728568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 9827288 - 9827406
Alignment:
Q  31 gttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaacggtcctcttccttatcc 130  Q
    |||||| |||||||| |  | ||||||| |||||||||| |||||||||||||  |||||| || ||||||| ||| ||||   ||| ||||||||||||    
T  9827288 gttattctcaaccattaacctaaacatgtaatcaacgtcgctatcatctttgagaagttgttgataatacacagtcttccagaagtcttcttccttatcc 9827387  T
Q  131 tcccccaagtcaacgcctg 149  Q
    | ||||||||| |||||||    
T  9827388 tgccccaagtccacgcctg 9827406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 28758923 - 28758869
Alignment:
Q  52 aaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtc 106  Q
    ||||||| |||||||||| |||||||||||||  ||||||||| |||||||||||    
T  28758923 aaacatgtaatcaacgtcgctatcatctttgagaagttgtggataatacacggtc 28758869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 1031194 - 1031026
Alignment:
Q  12 ggacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctcca 111  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |  |    
T  1031194 ggacataaagatgtaaaaggttattttcaaccatcacgcgaaacatgtaatcaacgtcactatcatctttgactagttgtggaaaatacacggtctttta 1031095  T
Q  112 acggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataatatgttctgtg 180  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||    
T  1031094 acggtcctcttccttatcctcccccaagtccacacctggaacttgtactactacataatatgttatgtg 1031026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 9e-69; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 30703645 - 30703812
Alignment:
Q  13 gacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaa 112  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30703645 gacataaagatgtaaaaggttattttcaaacatcacgcgaaacatgtaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcttccaa 30703744  T
Q  113 cggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataatatgttctgtg 180  Q
    || |||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||    
T  30703745 cgatcctcttccttatcctcccccaagtccacgcttggaacttgtactactatataatatgttctgtg 30703812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 12067519 - 12067354
Alignment:
Q  13 gacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaa 112  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  12067519 gacataaagatgtaaaaggttattttcaaccatcacgcgaaacatgtaatcaacgtcactattatctttgactagttgtggaaaatacacggtcttccaa 12067420  T
Q  113 cggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataatatgttctgtg 180  Q
    |||||||||||||||||||  |||||||| |||||||||| |||||||||||||||||||||||||||    
T  12067419 cggtcctcttccttatcct--cccaagtccacgcctggaatttgtactactacataatatgttctgtg 12067354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 1180969 - 1180801
Alignment:
Q  12 ggacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctcca 111  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| ||||    
T  1180969 ggacataaagatgtaaaaggttattttcaacaatcacacgaaacatgtaatcaacgtcacgatcatctttgactagttgtggaatatacacggtcttcca 1180870  T
Q  112 acggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataatatgttctgtg 180  Q
    || |||||||| |||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||    
T  1180869 acagtcctctttcttatcctcccccaagtccacgcctggaacttgtactaatgcataatatgttctgtg 1180801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 25818632 - 25818465
Alignment:
Q  12 ggacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctcca 111  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  25818632 ggacataaagatgtaaaaggttattttcaaccatcacgcgaaacatgtaatcaacgtcgctatcatctttgactagttgtggaaaatacacggtcttcca 25818533  T
Q  112 acggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataatatgttctgtg 180  Q
    |||| ||||||||||||||||||||||| | ||| |||  |||||||||||||||||| ||||||||||    
T  25818532 acggccctcttccttatcctcccccaag-ccacgactgacacttgtactactacataacatgttctgtg 25818465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 7318340 - 7318504
Alignment:
Q  13 gacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaa 112  Q
    ||||| ||||||||||  |||||||||||||||||| | ||||| | || ||||||| |||||||||| ||  ||||||||||||||||| ||| |||||    
T  7318340 gacataaagatgtaaagcgttattttcaaccatcacgctaaacacgtaagcaacgtcgctatcatcttcgagaagttgtggaaaatacacagtcttccaa 7318439  T
Q  113 cggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataatatgttct 177  Q
      || |||||||||||||||||| | ||| |||||||| || | ||||| ||||| | |||||||    
T  7318440 aagttctcttccttatcctcccctaggtccacgcctgggacatttactattacatcacatgttct 7318504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 31 - 150
Target Start/End: Complemental strand, 23943120 - 23943001
Alignment:
Q  31 gttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaacggtcctcttccttatcc 130  Q
    |||||| |||||||| || | ||||||| |||||||||| |||||||||||||  ||||||||| ||||||||||| ||||   ||||||||||||||||    
T  23943120 gttattctcaaccattaccctaaacatgaaatcaacgtcgctatcatctttgagaagttgtggataatacacggtcttccagaagtcctcttccttatcc 23943021  T
Q  131 tcccccaagtcaacgcctgg 150  Q
    ||||||||||| | ||||||    
T  23943020 tcccccaagtccaggcctgg 23943001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 20514236 - 20514394
Alignment:
Q  22 atgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaacggtcctct 121  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  20514236 atgtaaaaggttattttcaaccatcacgcgaaacatataatcaacgtcgctatcatctttgactagttgtggaaaaaacacggtcttccaacggtcctct 20514335  T
Q  122 tccttatcctcccccaagtcaacgcctggaacttgtactactacataatatgttctgtg 180  Q
    || ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  20514336 tcattatcctcccccaagtccacgcctggtacttgtactactacataatatgttctgtg 20514394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 27934292 - 27934175
Alignment:
Q  13 gacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaa 112  Q
    ||||| ||||||||||  |||||||||||||||||| | ||||||| || ||||||| |||||||||| ||| |||||||||||||| | |||| |||||    
T  27934292 gacataaagatgtaaagtgttattttcaaccatcacgctaaacatgtaagcaacgtcgctatcatcttcgacaagttgtggaaaatatatggtcttccaa 27934193  T
Q  113 cggtcctcttccttatcc 130  Q
      ||||| ||||||||||    
T  27934192 aagtccttttccttatcc 27934175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 53768328 - 53768218
Alignment:
Q  31 gttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaacggtcctcttccttatcc 130  Q
    |||||| |||||||| || |  |||||| ||||||||||||||||||||||||  ||||||||| ||||||  ||| ||||   ||||||||||||||||    
T  53768328 gttattctcaaccattacccttaacatgaaatcaacgtcactatcatctttgagaagttgtggataatacaatgtcttccataagtcctcttccttatcc 53768229  T
Q  131 tcccccaagtc 141  Q
    |||||||||||    
T  53768228 tcccccaagtc 53768218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 30531284 - 30531215
Alignment:
Q  12 ggacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatcttt 81  Q
    |||||| ||||||||||| ||||||||||||||| |  | ||||||| ||||||| || |||||||||||    
T  30531284 ggacataaagatgtaaaatgttattttcaaccattaacctaaacatgtaatcaacatcgctatcatcttt 30531215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 50006894 - 50007049
Alignment:
Q  12 ggacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctcca 111  Q
    |||||| ||||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||  ||||    
T  50006894 ggacataaagatgtaaaaggttattttcaaccatcacgggaaacttgtaatcaacgtcagtatcatctttgactagttgtggaaaatacacggttttcca 50006993  T
Q  112 acggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacat 167  Q
    ||  || |||||||||||||||||||| || ||||||||||||||| |||||||||    
T  50006994 acaatcatcttccttatcctcccccaaatccacgcctggaacttgtcctactacat 50007049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 50334663 - 50334816
Alignment:
Q  13 gacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaa 112  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||            
T  50334663 gacataaagatgtaaaaagttattttcaaccatcacgcgaaacatgtaatcaacgtcactatcatctttgactagttgtggaaaatacacgg-------- 50334754  T
Q  113 cggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataatatgttctgtg 180  Q
          ||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  50334755 ------tcttccttatcctcccccaagtctacgcatagaacttgtactactacataatatgttctgtg 50334816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 1938825 - 1938728
Alignment:
Q  12 ggacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctc 109  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1938825 ggacataaagatgtaaaaggttattttcaaccatcacgcgaaacatgtaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctc 1938728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 156706 - 156800
Alignment:
Q  31 gttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaacggtcctcttcct 125  Q
    |||||| |||||||| || | ||||||| |||||||||| |||||||||||||  ||||||||| ||||||||||| ||||   |||||||||||    
T  156706 gttattctcaaccattaccctaaacatgaaatcaacgtcgctatcatctttgagaagttgtggataatacacggtcttccagaagtcctcttcct 156800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 41784876 - 41784788
Alignment:
Q  13 gacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaataca 101  Q
    ||||| ||||||||||| ||||||||||||||| | || ||||||| |||||||||| ||||||| || ||  |||  |||||||||||    
T  41784876 gacataaagatgtaaaatgttattttcaaccattaaactaaacatgtaatcaacgtctctatcatattcgataagtgttggaaaataca 41784788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 18486505 - 18486410
Alignment:
Q  52 aaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaacggtcctcttccttatcctcccccaagtcaacgcctgg 150  Q
    ||||||| |||||||||| |||||||||||||  |||   ||| ||||||||||| ||||   ||| |||||||||| |||||||||||| || |||||    
T  18486505 aaacatgtaatcaacgtcgctatcatctttgagaagt---ggataatacacggtcttccagaagtcttcttccttattctcccccaagtccacacctgg 18486410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 3e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 15893037 - 15893198
Alignment:
Q  13 gacatcaagatgtaaaaggttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaa 112  Q
    ||||| ||||||||||| ||||||||||||||| |  | ||||||| ||  | ||   |||||||||||||| ||||||||||||||||||||| |||||    
T  15893037 gacataaagatgtaaaatgttattttcaaccattaacctaaacatgtaaatatcg---ctatcatctttgacaagttgtggaaaatacacggtcttccaa 15893133  T
Q  113 cggtcctcttccttatcctcccccaagtcaacgcctggaacttgtactactacataatatgttct 177  Q
      ||| ||||||||||||||||||||||| |||| |||  | ||||||| ||||| | |||||||    
T  15893134 aagtcatcttccttatcctcccccaagtccacgcatggcgcatgtactattacatgagatgttct 15893198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 24619141 - 24619250
Alignment:
Q  32 ttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaacggtcctcttccttatcct 131  Q
    |||||||||||||| |  | ||||||| ||||||||||||||||||||||||  ||||||||| |||||||| || | |||  |||||||||||||||||    
T  24619141 ttattttcaaccattaacctaaacatgtaatcaacgtcactatcatctttgaaaagttgtggataatacacgatctttcaaaagtcctcttccttatcct 24619240  T
Q  132 cccccaagtc 141  Q
    ||||||||||    
T  24619241 cccccaagtc 24619250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 5016046 - 5016156
Alignment:
Q  31 gttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaacggtcctcttccttatcc 130  Q
    |||||| |||||||| || | ||| ||| ||||||||||||||||||||||||  ||||||||| ||||||| ||| || |   ||||||||||||||||    
T  5016046 gttattctcaaccattaccctaaatatgaaatcaacgtcactatcatctttgagaagttgtggataatacacagtcttctagaagtcctcttccttatcc 5016145  T
Q  131 tcccccaagtc 141  Q
    |||| ||||||    
T  5016146 tccctcaagtc 5016156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 5075714 - 5075604
Alignment:
Q  31 gttattttcaaccatcacacgaaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaacggtcctcttccttatcc 130  Q
    |||||| |||||||| || | ||||||| |||||||||| |||||||||||||  ||||||||| ||||||||||  ||||   ||| |||||||| |||    
T  5075714 gttattctcaaccattaccctaaacatgaaatcaacgtcgctatcatctttgagaagttgtggataatacacggttttccagaagtcatcttccttctcc 5075615  T
Q  131 tcccccaagtc 141  Q
    |||||||||||    
T  5075614 tcccccaagtc 5075604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 33228436 - 33228392
Alignment:
Q  19 aagatgtaaaaggttattttcaaccatcacacgaaacatgcaatc 63  Q
    ||||||||||| |||||||||||||||||| ||||||||| ||||    
T  33228436 aagatgtaaaatgttattttcaaccatcacgcgaaacatgtaatc 33228392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 33034 - 32945
Alignment:
Q  52 aaacatgcaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcctccaacggtcctcttccttatcctcccccaagtc 141  Q
    ||||||| |||||||||| ||||| |||||||  | ||||||| ||||||||||| |||    ||| |||||||||||||||||||||||    
T  33034 aaacatgtaatcaacgtcgctatcgtctttgaaaaattgtggataatacacggtcttcctgaagtcttcttccttatcctcccccaagtc 32945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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