View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_521 (Length: 201)

Name: NF10140A_low_521
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_521
NF10140A_low_521
[»] chr8 (5 HSPs)
chr8 (18-174)||(10949561-10949717)
chr8 (18-174)||(10957566-10957722)
chr8 (22-115)||(24126613-24126706)
chr8 (22-118)||(24323207-24323302)
chr8 (31-118)||(140908-140995)
[»] chr3 (2 HSPs)
chr3 (22-118)||(6172314-6172410)
chr3 (22-118)||(6251655-6251751)
[»] chr1 (2 HSPs)
chr1 (22-118)||(19037002-19037098)
chr1 (58-118)||(48418-48478)
[»] chr7 (1 HSPs)
chr7 (52-115)||(19280184-19280247)
[»] chr2 (2 HSPs)
chr2 (56-118)||(9683852-9683915)
chr2 (36-118)||(12954450-12954534)
[»] chr5 (1 HSPs)
chr5 (28-117)||(6820584-6820673)
[»] chr6 (1 HSPs)
chr6 (18-101)||(29336572-29336655)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 10949717 - 10949561
Alignment:
Q  18 tggacatcacaatctcacctcacgcagcaatgttgacctgtctaccaagttgaaagcattcgaaaaaactactgtgagcatagtcaaggaaccatctcca 117  Q
    |||||||| ||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10949717 tggacatctcaatctcacttcacgcaacaatgttgacatgtctaccaagttgaaagcattcgaaaaaactactgtgagcatagtcaaggaaccatctcca 10949618  T
Q  118 tatcgatgtcttaacaacttgttagcactgtgcataatggcctttccttacctggag 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10949617 tatcgatgtcttaacaacttgttagcactgtgcataatggcctttccttacctggag 10949561  T

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Target: chr8; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 10957722 - 10957566
Alignment:
Q  18 tggacatcacaatctcacctcacgcagcaatgttgacctgtctaccaagttgaaagcattcgaaaaaactactgtgagcatagtcaaggaaccatctcca 117  Q
    |||||||| ||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10957722 tggacatctcaatctcacttcacgcaacaatgttgacatgtctaccaagttgaaagcattcgaaaaaactactgtgagcatagtcaaggaaccatctcca 10957623  T
Q  118 tatcgatgtcttaacaacttgttagcactgtgcataatggcctttccttacctggag 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10957622 tatcgatgtcttaacaacttgttagcactgtgcataatggcctttccttacctggag 10957566  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 24126613 - 24126706
Alignment:
Q  22 catcacaatctcacctcacgcagcaatgttgacctgtctaccaagttgaaagcattcgaaaaaactactgtgagcatagtcaaggaaccatctc 115  Q
    |||| ||||||||||||||| |||| ||| |||||| |||||||||||||| ||||| ||||| ||||| | ||||||||||||||||||||||    
T  24126613 catctcaatctcacctcacgtagcagtgtcgacctgcctaccaagttgaaaacattcaaaaaatctactataagcatagtcaaggaaccatctc 24126706  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 24323207 - 24323302
Alignment:
Q  22 catcacaatctcacctcacgcagcaatgttgacctgtctaccaagttgaaagcattcgaaaaaactactgtgagcatagtcaaggaaccatctccat 118  Q
    |||| |||||| |||||||| |||| ||  ||| |||||||||||||||| |||||| ||||| ||||||||||||||||||| |||||||||||||    
T  24323207 catctcaatcttacctcacgtagcagtgccgacatgtctaccaagttgaaggcattc-aaaaatctactgtgagcatagtcaatgaaccatctccat 24323302  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 140908 - 140995
Alignment:
Q  31 ctcacctcacgcagcaatgttgacctgtctaccaagttgaaagcattcgaaaaaactactgtgagcatagtcaaggaaccatctccat 118  Q
    ||||||| | |||||||||  ||| |||||| |||||||||||||||||| ||| |||  ||||||||||  ||  ||||||||||||    
T  140908 ctcacctgatgcagcaatgccgacgtgtctatcaagttgaaagcattcgagaaatctatcgtgagcatagataaaaaaccatctccat 140995  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 6172410 - 6172314
Alignment:
Q  22 catcacaatctcacctcacgcagcaatgttgacctgtctaccaagttgaaagcattcgaaaaaactactgtgagcatagtcaaggaaccatctccat 118  Q
    |||| ||||||||| ||||| |||| || ||| || |||||||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||||    
T  6172410 catctcaatctcacatcacgtagcagtgctgatctatctaccaagttgaaggcattcgaaaaatctactgtaagcatagtcaaggaatcatctccat 6172314  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 6251751 - 6251655
Alignment:
Q  22 catcacaatctcacctcacgcagcaatgttgacctgtctaccaagttgaaagcattcgaaaaaactactgtgagcatagtcaaggaaccatctccat 118  Q
    |||| ||||||||| ||||| |||| || |||||| |||||||||||||| |||||||||||| ||||| | ||||| |||||||||||||||||||    
T  6251751 catctcaatctcacatcacgtagcagtgctgacctatctaccaagttgaaggcattcgaaaaatctactataagcattgtcaaggaaccatctccat 6251655  T

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Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 19037002 - 19037098
Alignment:
Q  22 catcacaatctcacctcacgcagcaatgttgacctgtctaccaagttgaaagcattcgaaaaaactactgtgagcatagtcaaggaaccatctccat 118  Q
    |||| ||||||||||||||| || | ||  || || ||||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||||||    
T  19037002 catctcaatctcacctcacgtagtagtgccgaactatctaccaagttgaaagcattcgaaaaatctactgtaagcatagccaaagaaccatctccat 19037098  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 48418 - 48478
Alignment:
Q  58 tctaccaagttgaaagcattcgaaaaaactactgtgagcatagtcaaggaaccatctccat 118  Q
    |||||||||||||||| |||||| ||| |||  ||||||||||  || |||||||||||||    
T  48418 tctaccaagttgaaagaattcgagaaatctatcgtgagcatagctaaagaaccatctccat 48478  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 19280184 - 19280247
Alignment:
Q  52 gacctgtctaccaagttgaaagcattcgaaaaaactactgtgagcatagtcaaggaaccatctc 115  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||| | |||||||||||||    
T  19280184 gacctgtctaccaagttgaaagcattcgaaaaatctactgtaagcataattaaggaaccatctc 19280247  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 9683915 - 9683852
Alignment:
Q  56 tgtctaccaagttgaaagcattcgaaaaaa-ctactgtgagcatagtcaaggaaccatctccat 118  Q
    ||||||||||||||||||||||| |||||| ||||| | |||||||||||||||||||||||||    
T  9683915 tgtctaccaagttgaaagcattcaaaaaaatctactataagcatagtcaaggaaccatctccat 9683852  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 12954450 - 12954534
Alignment:
Q  36 ctcacgcagcaatgttgacctgtctaccaagttgaaa--gcattcgaaaaaactactgtgagcatagtcaaggaaccatctccat 118  Q
    |||||||| ||||| |||  ||| |||||||||||||  |||||||| ||| ||| ||||||||||||||| |||||||||||||    
T  12954450 ctcacgcaacaatgctgaaatgtataccaagttgaaattgcattcgagaaatctattgtgagcatagtcaaagaaccatctccat 12954534  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 6820673 - 6820584
Alignment:
Q  28 aatctcacctcacgcagcaatgttgacctgtctaccaagttgaaagcattcgaaaaaactactgtgagcatagtcaaggaaccatctcca 117  Q
    ||||||| |||||||| |||| ||||| ||||||||||||| ||| ||||| | ||| ||| ||||||||||||||   |||||||||||    
T  6820673 aatctcatctcacgcaacaatattgacttgtctaccaagttaaaaacattctagaaatctattgtgagcatagtcacaaaaccatctcca 6820584  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 29336655 - 29336572
Alignment:
Q  18 tggacatcacaatctcacctcacgcagcaatgttgacctgtctaccaagttgaaagcattcgaaaaaactactgtgagcatagt 101  Q
    |||||||| ||||||||||||||| || | ||  ||| |||||||||||||| | | |||||||||| ||| |||| |||||||    
T  29336655 tggacatctcaatctcacctcacgtagtagtgccgacttgtctaccaagttgtagggattcgaaaaatctattgtgggcatagt 29336572  T

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