View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_54 (Length: 385)

Name: NF10140A_low_54
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_54
NF10140A_low_54
[»] chr6 (13 HSPs)
chr6 (9-366)||(23346974-23347331)
chr6 (11-362)||(15674105-15674460)
chr6 (19-366)||(26205624-26205964)
chr6 (19-366)||(25318130-25318470)
chr6 (23-95)||(17078711-17078783)
chr6 (25-95)||(23065569-23065639)
chr6 (55-95)||(11060415-11060455)
chr6 (13-120)||(19256162-19256269)
chr6 (13-120)||(33640440-33640546)
chr6 (40-95)||(33805327-33805382)
chr6 (25-95)||(13086086-13086156)
chr6 (55-95)||(18051002-18051042)
chr6 (11-111)||(32186214-32186314)
[»] chr4 (14 HSPs)
chr4 (11-366)||(20675298-20675653)
chr4 (11-366)||(2631674-2632029)
chr4 (19-366)||(23872993-23873340)
chr4 (11-366)||(55298896-55299243)
chr4 (221-366)||(8486700-8486845)
chr4 (11-326)||(3129498-3129806)
chr4 (11-137)||(7662817-7662944)
chr4 (266-362)||(8654837-8654933)
chr4 (266-326)||(47541241-47541301)
chr4 (20-83)||(13158304-13158367)
chr4 (13-87)||(19114991-19115065)
chr4 (40-109)||(53810374-53810443)
chr4 (43-87)||(10562874-10562918)
chr4 (43-95)||(42778785-42778837)
[»] chr3 (11 HSPs)
chr3 (11-366)||(29309684-29310039)
chr3 (9-364)||(6175985-6176340)
chr3 (198-366)||(2813196-2813364)
chr3 (149-299)||(14903980-14904130)
chr3 (11-137)||(30166853-30166979)
chr3 (181-359)||(49731611-49731789)
chr3 (40-103)||(36709449-36709512)
chr3 (25-95)||(21740046-21740116)
chr3 (29-103)||(45684715-45684789)
chr3 (245-275)||(43909917-43909947)
chr3 (265-321)||(30167107-30167163)
[»] chr2 (15 HSPs)
chr2 (11-366)||(26894121-26894476)
chr2 (11-366)||(26899560-26899915)
chr2 (19-366)||(13550400-13550740)
chr2 (19-339)||(13550880-13551193)
chr2 (210-366)||(43627775-43627931)
chr2 (11-137)||(45422025-45422151)
chr2 (317-366)||(33548148-33548197)
chr2 (29-103)||(28400077-28400151)
chr2 (13-92)||(15018227-15018306)
chr2 (26-111)||(43310790-43310875)
chr2 (43-95)||(1380629-1380681)
chr2 (28-120)||(9668532-9668624)
chr2 (23-87)||(11028425-11028489)
chr2 (40-92)||(35488387-35488439)
chr2 (265-321)||(45421841-45421897)
[»] chr7 (11 HSPs)
chr7 (11-366)||(13440329-13440684)
chr7 (11-166)||(15653216-15653369)
chr7 (14-95)||(46626369-46626450)
chr7 (73-250)||(12378299-12378476)
chr7 (40-103)||(18671709-18671772)
chr7 (28-103)||(18767947-18768022)
chr7 (28-103)||(34457684-34457759)
chr7 (13-120)||(45993098-45993204)
chr7 (40-89)||(41340086-41340135)
chr7 (55-111)||(36227703-36227759)
chr7 (266-322)||(46624013-46624069)
[»] chr1 (11 HSPs)
chr1 (11-366)||(48072940-48073295)
chr1 (11-366)||(32352819-32353161)
chr1 (11-366)||(37530842-37531188)
chr1 (221-366)||(21528441-21528586)
chr1 (27-120)||(28097491-28097583)
chr1 (23-87)||(10710718-10710782)
chr1 (28-120)||(39430799-39430891)
chr1 (13-87)||(25504505-25504579)
chr1 (34-155)||(29139934-29140055)
chr1 (22-78)||(7396242-7396298)
chr1 (43-87)||(30110466-30110510)
[»] chr5 (7 HSPs)
chr5 (11-366)||(34481223-34481579)
chr5 (11-362)||(10486429-10486780)
chr5 (9-79)||(588070-588140)
chr5 (28-101)||(38358008-38358081)
chr5 (23-95)||(20208241-20208312)
chr5 (28-83)||(35122232-35122287)
chr5 (13-79)||(31864797-31864863)
[»] chr8 (6 HSPs)
chr8 (211-366)||(16420719-16420874)
chr8 (11-322)||(7452672-7452983)
chr8 (23-120)||(36157676-36157772)
chr8 (28-103)||(44082538-44082613)
chr8 (25-111)||(6901440-6901526)
chr8 (43-95)||(17659378-17659430)
[»] scaffold0029 (1 HSPs)
scaffold0029 (11-362)||(134363-134714)
[»] scaffold0002 (2 HSPs)
scaffold0002 (11-362)||(312190-312541)
scaffold0002 (11-362)||(327644-327995)
[»] scaffold0418 (1 HSPs)
scaffold0418 (11-137)||(8110-8235)
[»] scaffold0131 (1 HSPs)
scaffold0131 (11-79)||(4065-4133)
[»] scaffold0179 (2 HSPs)
scaffold0179 (23-95)||(8079-8151)
scaffold0179 (23-95)||(13013-13085)
[»] scaffold0308 (1 HSPs)
scaffold0308 (40-95)||(17692-17747)
[»] scaffold0912 (1 HSPs)
scaffold0912 (43-95)||(2414-2466)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 366
Target Start/End: Original strand, 23346974 - 23347331
Alignment:
Q  9 gctggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttgg 108  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||    
T  23346974 gctggtggatagaggtggtttgtggtatagggttttagtcgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcttgctgg 23347073  T
Q  109 tggtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacactt 208  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |    
T  23347074 tggtcggaggtgaggcgacttagggatagggtaggcgatggtggtagcgggaggtttgaggatcaggtgttgaggagagttggtgatggggttgacacct 23347173  T
Q  209 cgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgactt 308  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23347174 cgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgccgactt 23347273  T
Q  309 gctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  23347274 gctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgg 23347331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 15674460 - 15674105
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||||    
T  15674460 tggtggaccgagatggtttgtggtatagggttttagtcgccagatatggtgaattaggtggcaggttggaggttgggggccggagagtttctagctggtg 15674361  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    |||||||||||||||||||||||||| | |||| || |||||| |||||||||||||||||  |||||||||||||||||||||||||||||| ||||||    
T  15674360 gtcggaggtgaggcgacttagggatatgttaggcgacggtggtggcgggtggtttgaggatcgggtgttgaggagagttggtgatggggttgagacttcg 15674261  T
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    ||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |    
T  15674260 ttttggtctgataggtggataggggaggctcctctttgcgtgcggtttaggcggttgtttgagttaacggagaataagtctatgtctgtggccgacttac 15674161  T
Q  311 tctctgttgattcggaacggtgg----ggggaggcgtggaggtggagacgtaggtt 362  Q
    ||||||||||||| || || |||    ||||||| |||||||||||||||||||||    
T  15674160 tctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggtt 15674105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 26205964 - 26205624
Alignment:
Q  19 agaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggagg 118  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     ||||  ||||||||||||||||||||||||||||    
T  26205964 agaggtggtttgtggtatacggttttagtcgccagatatggcgaattaggtggcaggttgg-----ggga--cggagagtttcttgttggtggtcggagg 26205872  T
Q  119 tgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcgttttggtc 218  Q
    |||| || ||||||| |||||| || | |||||||||||| |||||| ||||| |||||||||||||||||||||||| || ||| || ||||||||||     
T  26205871 tgagtcgtcttaggggtagggttggtgttggtggtagcggttggtttaaggatcaggtgttgaggagagttggtgatgaggctgatacatcgttttggtt 26205772  T
Q  219 taataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgtt 318  Q
      ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||    
T  26205771 cgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgtt 26205672  T
Q  319 gattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    |||||  | |||||||||||   ||||||||||| |||||||||||||    
T  26205671 gattcaaagcggtggggggatttgtggaggtggatacgtaggttatgg 26205624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 25318470 - 25318130
Alignment:
Q  19 agaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggagg 118  Q
    ||||| ||||||||||||| |||||| |||||||||||||||||||||||| ||||| |||     ||||  ||||||||||||||||||||||||||||    
T  25318470 agagggggtttgtggtatacggtttttgtcgccagatatggcgaattaggtcgcagggtgg-----ggga--cggagagtttcttgttggtggtcggagg 25318378  T
Q  119 tgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcgttttggtc 218  Q
    |||| || ||||||  |||||| || | |||||||||||| |||||| ||||| |||||||||||||||||||||||| || ||| || ||||||||||     
T  25318377 tgagtcgtcttaggtgtagggttggtgttggtggtagcggttggtttaaggatcaggtgttgaggagagttggtgatgaggctgatacatcgttttggtt 25318278  T
Q  219 taataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgtt 318  Q
      ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||    
T  25318277 cgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgtt 25318178  T
Q  319 gattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    |||||  | |||||||||||   ||||||||||| |||||||||||||    
T  25318177 gattcaaagcggtggggggatttgtggaggtggatacgtaggttatgg 25318130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 17078711 - 17078783
Alignment:
Q  23 gtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||| |||||| | || ||||||||| | ||||||||| ||||||| ||||||||||||||| |||||||    
T  17078711 gtggtttttggtatcgagtcttagtcgcccgttatggcgaagtaggtgggaggttggaggttgggggccggag 17078783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 23065569 - 23065639
Alignment:
Q  25 ggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||||||||   |||||||||||| | ||||||||| ||||||| ||||||||||| ||| |||||||    
T  23065569 ggtttgtggtatcatgttttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggccggag 23065639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 11060415 - 11060455
Alignment:
Q  55 tatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  11060415 tatggcgaattaggtgggaggttggaggttgggggccggag 11060455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 19256269 - 19256162
Alignment:
Q  13 gtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggt 112  Q
    ||||| || |||||||| |||||||| |||||||||||| | ||||||||  |  |||| ||||||||||||||| ||| |||   ||||| |||||||     
T  19256269 gtggataggggtggtttttggtatagagttttagtcgcccgttatggcgaggtgtgtgggaggttggaggttgggggccagagttgttcttcttggtggc 19256170  T
Q  113 cggaggtg 120  Q
     |||||||    
T  19256169 gggaggtg 19256162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 33640546 - 33640440
Alignment:
Q  13 gtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggt 112  Q
    ||||| || |||||||| |||||||| |||||||||||| | ||||||||  |  |||| ||||||||||||||| |||||||   ||||| |||||||     
T  33640546 gtggataggggtggtttttggtatagagttttagtcgcccgttatggcgaggtgtgtgggaggttggaggttggg-gccggagttgttcttcttggtggc 33640448  T
Q  113 cggaggtg 120  Q
     |||||||    
T  33640447 gggaggtg 33640440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 33805382 - 33805327
Alignment:
Q  40 gttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    |||||||||||| | ||||||||| ||||||| ||||||||||| ||| |||||||    
T  33805382 gttttagtcgcccgctatggcgaaataggtgggaggttggaggtggggggccggag 33805327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 13086156 - 13086086
Alignment:
Q  25 ggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    |||||||||||||| ||| |||||||| | ||||||||  | || || ||||||||||||||| |||||||    
T  13086156 ggtttgtggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccggag 13086086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 18051002 - 18051042
Alignment:
Q  55 tatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||||| ||||||| ||||||||||||||| |||||||    
T  18051002 tatggcgaagtaggtgggaggttggaggttgggggccggag 18051042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 32186314 - 32186214
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| |||||||| || ||||||||||| || || || |||||| | ||  | | ||| ||||||||||||||| ||||||| | ||||| ||||||    
T  32186314 tggtggatagaggtgggttttggtatagggtgttggtggcgagatatagtgaggtggctgggaggttggaggttgggggccggagtgcttcttcttggtg 32186215  T
Q  111 g 111  Q
    |    
T  32186214 g 32186214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 20675653 - 20675298
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||    
T  20675653 tggtggacagaggtggtttgtggtatagggttttagtcgccaggtatggcgaaataggtggcaggttggaggttgggggccgaagagtttcttgctggtg 20675554  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20675553 gtcggaggtgaggcgacttagggatagggtaggcgatggtggtagcgggtggtttgaggatcaggtgttgaggagagttggtgatggggttgacacttcg 20675454  T
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20675453 ttttggtctgataggtggttaggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatatccgtggccgacttgc 20675354  T
Q  311 tctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    ||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  20675353 tctttgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgg 20675298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 2632029 - 2631674
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    |||||||||  |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| || |||| ||||||||||| |||||    
T  2632029 tggtggacaagggtggtttgtggtatagggttttagttgccaggtatggcgaattaggtggcaggttggaggttaggggccgaagagtttcttgctggtg 2631930  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    |||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||     
T  2631929 gtcggaggtgaggcgatttagggacagggtaggtgatggtggtagcgggtggtttgaggatcaggtgatgaggagagttggtgatggggttgacacttca 2631830  T
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2631829 ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc 2631730  T
Q  311 tctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  2631729 tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgg 2631674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 23872993 - 23873340
Alignment:
Q  19 agaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggagg 118  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||    
T  23872993 agaggtggtttgtggtatcgggttttagtcgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcttgctggtggtcggagg 23873092  T
Q  119 tgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcgttttggtc 218  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||    
T  23873093 tgaggcgtcttagggatggggtaggcgatggtggtagcgggtggtttgaggatcaggtgttgaggagagttggtgatggggtcgatacttcgttttggtc 23873192  T
Q  219 taataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgtt 318  Q
    | |||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23873193 tgataggtggattggggaggctcctctgtgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgtt 23873292  T
Q  319 gattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    |||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  23873293 gattcggagcggtggggggaggtgtggaggtggagacgtaggtaatgg 23873340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 55299243 - 55298896
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  55299243 tggtggatagaggtggtttgtggtatcgggttttagtcgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcttgctggtg 55299144  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||  ||||||    
T  55299143 gtcggaggtgaggcgtcttagggatggggtaggcgatggtggtagcgggtggtttggggatcaggtgttgaggagagttggtgatggggttgttacttcg 55299044  T
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    |||||||||        |||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  55299043 ttttggtct--------gataggtgaggctcctctttgtatgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgc 55298952  T
Q  311 tctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  55298951 tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatgg 55298896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 221 - 366
Target Start/End: Original strand, 8486700 - 8486845
Alignment:
Q  221 ataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttga 320  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  8486700 ataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttga 8486799  T
Q  321 ttcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||    
T  8486800 ttcggaccggtggggggaggtgtggaggtggagacgtaggttatgg 8486845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 326
Target Start/End: Original strand, 3129498 - 3129806
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||||||       |||||||| ||||||| ||||| ||||||||    
T  3129498 tggtggatagaggtggtttgtggtatagggttttagttgtcaggtatggcgaattaggtggc-------aggttgggggccggagtgtttcgtgttggtg 3129590  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    |  ||||||||| ||  |||||| ||| |  || ||||| |   |||| |||||||  ||| | |||   ||||| ||||| ||||| | ||| || | |    
T  3129591 gagggaggtgagtcgttttaggggtagtgatggtgatggagagggcggctggtttgttgatcatgtggctaggagggttggagatggagctgatacattg 3129690  T
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    ||||||| |  ||||||| ||||||| | |||| |||||||  | |||||  |  ||||||||||||||||||||||||  ||||| ||||| ||||||     
T  3129691 ttttggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaacagagaataagttcatgtctgtggcagacttgt 3129790  T
Q  311 tctctgttgattcgga 326  Q
    ||||| ||||||||||    
T  3129791 tctctattgattcgga 3129806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 7662817 - 7662944
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggtt-gggagccggagagtttcttgttggt 109  Q
    |||||||||||||||||||||||||||| || ||||| || || |||||||||||||||||||| ||||||||| ||| ||||||| ||||| |||||||    
T  7662817 tggtggacagaggtggtttgtggtatagtgtcttagttgctaggtatggcgaattaggtggcagattggaggttcgggggccggagtgtttcgtgttggt 7662916  T
Q  110 ggtcggaggtgaggcgacttagggatag 137  Q
    ||  ||||||||| ||  ||||||||||    
T  7662917 ggggggaggtgagtcgtattagggatag 7662944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 362
Target Start/End: Original strand, 8654837 - 8654933
Alignment:
Q  266 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggtt 362  Q
    |||||||||||||||||||||||| |||||| ||||| |||||| | |||||||||||||| | ||||||||    |||||||||||||||||||||    
T  8654837 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggtt 8654933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 47541301 - 47541241
Alignment:
Q  266 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcgga 326  Q
    ||||||||||||||||||||||||  ||||| ||||| |||||| | ||||||||||||||    
T  47541301 tgtttgagttaacagagaataagttcatgtctgtggcagacttgttttctgttgattcgga 47541241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 13158304 - 13158367
Alignment:
Q  20 gaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggt 83  Q
    |||| ||||| |||||||||||||||||| || | |||||||||  |||||| |||||||||||    
T  13158304 gaggaggtttttggtatagggttttagtcacccgttatggcgaagcaggtgggaggttggaggt 13158367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 19115065 - 19114991
Alignment:
Q  13 gtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttggg 87  Q
    ||||| || ||||| || |||||||| |||||||||||  | ||||||||| || |||| |||||||||||||||    
T  19115065 gtggataggggtggattttggtatagagttttagtcgctcgttatggcgaagtatgtgggaggttggaggttggg 19114991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 53810443 - 53810374
Alignment:
Q  40 gttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggt 109  Q
    |||||||||| | | ||||||||| ||||||| ||||||||||| ||| ||||||| | ||||| |||||    
T  53810443 gttttagtcgtctgttatggcgaagtaggtgggaggttggaggtggggggccggagtgattcttcttggt 53810374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 10562874 - 10562918
Alignment:
Q  43 ttagtcgccagatatggcgaattaggtggcaggttggaggttggg 87  Q
    ||||||||| | ||||||||| ||||||| |||||||||||||||    
T  10562874 ttagtcgcccgttatggcgaagtaggtgggaggttggaggttggg 10562918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 42778837 - 42778785
Alignment:
Q  43 ttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||||| | ||||||||| |||| || ||||||||||||||| |||||||    
T  42778837 ttagtcgcccgttatggcgaagtaggcgggaggttggaggttgggggccggag 42778785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 29310039 - 29309684
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  29310039 tggtggacaaaggtggtttgtggtatagggttttagtcgccaggtatgccgaattaggtggcaggttggaggttgggggccggagagtttcttgctggtg 29309940  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    |||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  29309939 gtcggaggtgaggcgaattagggacagggtaggtgatggtggtagcgggtggtttgagaatcaggtgttgaggagagttggtgatggggttgacacttcg 29309840  T
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29309839 ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 29309740  T
Q  311 tctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    ||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||    
T  29309739 tctctgtcgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgg 29309684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 364
Target Start/End: Original strand, 6175985 - 6176340
Alignment:
Q  9 gctggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttgg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||    
T  6175985 gctggtggacagaggtggtttgtggtatagggttttagtcgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcttgctgg 6176084  T
Q  109 tggtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacactt 208  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||||||||    
T  6176085 tggtcggaggtgaggcgacttagggatagggtaggcgatggtggtagcgggtggtttgaggatcaggtgttgatgagaatgggtgatggggttgacactt 6176184  T
Q  209 cgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgactt 308  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  6176185 cgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttagacggttgtttgagttaatagagaataagtctatgtccgtcgccgactt 6176284  T
Q  309 gctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttat 364  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  6176285 gctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttat 6176340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 198 - 366
Target Start/End: Original strand, 2813196 - 2813364
Alignment:
Q  198 ggttgacacttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtcc 297  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2813196 ggttgacacttcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtcc 2813295  T
Q  298 gtggccgacttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    || |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  2813296 gttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgg 2813364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 149 - 299
Target Start/End: Original strand, 14903980 - 14904130
Alignment:
Q  149 gtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcgttttggtctaataggtggataggggaggctcctctttg 248  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14903980 gtggtagcgggtggtatgaggatcaggtgttgaggagagttggtgatggggttgacacttcgttttggtctgataggtggataggggaggctcctctttg 14904079  T
Q  249 tgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgt 299  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  14904080 tgtgcggtttaggcggttgtttgagtttacagagaataagtctatgtccgt 14904130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 30166853 - 30166979
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    |||| ||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||| |||| ||  | || ||||||||    
T  30166853 tggttgacagaggtggtttgtggtatagtgtcttagttgccaggtatggcgaattaggtggcaggttggaggttgggggccgaagtatatcgtgttggtg 30166952  T
Q  111 gtcggaggtgaggcgacttagggatag 137  Q
    |  ||||||||| ||  ||||||||||    
T  30166953 gagggaggtgagtcgtattagggatag 30166979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 359
Target Start/End: Original strand, 49731611 - 49731789
Alignment:
Q  181 aggagagttggtgatggggttgacacttcgttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacag 280  Q
    ||||| ||||| ||||| | |||||| | |||||||| | |||||||| ||||||| | |||| |||||||  | ||| |  |  |||||||||||||||    
T  49731611 aggagggttggagatggagctgacacattgttttggtttgataggtggttaggggatgttcctttttgtgtccgttttcgtagactgtttgagttaacag 49731710  T
Q  281 agaataagtctatgtccgtggccgacttgctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtag 359  Q
    |||||||||  ||||  ||||| |||||| ||||||||||| |||| | | ||||||    ||||||||||||||||||    
T  49731711 agaataagttcatgtatgtggcagacttgttctctgttgatccggagcagcggggggttatgtggaggtggagacgtag 49731789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 36709512 - 36709449
Alignment:
Q  40 gttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttctt 103  Q
    |||||||||||| | ||||||||| ||||||| ||||||||||| ||| ||||||| |||||||    
T  36709512 gttttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggccggagtgtttctt 36709449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 21740046 - 21740116
Alignment:
Q  25 ggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||| |||||| | ||| |||||||| | ||||||||| ||||||| ||||||||||||||| |||||||    
T  21740046 ggtttatggtattgtgttctagtcgcccgttatggcgaagtaggtgggaggttggaggttgggggccggag 21740116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 45684789 - 45684715
Alignment:
Q  29 tgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttctt 103  Q
    ||||||||  ||||||||||||  | ||||||||| ||||||| ||||||||||| ||| ||||||| |||||||    
T  45684789 tgtggtatcaggttttagtcgctcgttatggcgaagtaggtgggaggttggaggtggggggccggagtgtttctt 45684715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 275
Target Start/End: Original strand, 43909917 - 43909947
Alignment:
Q  245 tttgtgtgaggtttaggcggttgtttgagtt 275  Q
    |||||||||||||||||||||||||||||||    
T  43909917 tttgtgtgaggtttaggcggttgtttgagtt 43909947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 30167107 - 30167163
Alignment:
Q  265 ttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgat 321  Q
    ||||||||||||||||||||||||   ||||  ||||| |||||| |||||||||||    
T  30167107 ttgtttgagttaacagagaataagctcatgtttgtggcagacttgttctctgttgat 30167163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 26894121 - 26894476
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||    
T  26894121 tggtggacataggtggtttgtggtatagggttttagtcgccaggtatggcgaaataggtggcaggttggaggttgggggccggagtgtttcttgctggtg 26894220  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26894221 gtcggaggtgaggcgacttagggatagggtaggcgatggtggtagcgggtggtttgaggatcaggtgttgaggagagttggtgatggggttgacacttcg 26894320  T
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  26894321 ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttgc 26894420  T
Q  311 tctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    ||||||||| |||||| ||||||||| ||| |||||||||||||||||||||||||    
T  26894421 tctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatgg 26894476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 26899560 - 26899915
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||    
T  26899560 tggtggacataggtggtttgtggtatagggttttagtcgccaggtatggcgaaataggtggcaggttggaggttgggggccggagtgtttcttgctggtg 26899659  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26899660 gtcggaggtgaggcgacttagggatagggtaggcgatggtggtagcgggtggtttgaggatcaggtgttgaggagagttggtgatggggttgacacttcg 26899759  T
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  26899760 ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttgc 26899859  T
Q  311 tctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    ||||||||| |||||| ||||||||| ||| |||||||||||||||||||||||||    
T  26899860 tctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatgg 26899915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 13550740 - 13550400
Alignment:
Q  19 agaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggagg 118  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||    
T  13550740 agaggtgatttgtggtatagggttttagttgccagatatggcgaattaggtggcaggttggggg-------ccggagagtttcttgttggtggtcggagg 13550648  T
Q  119 tgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcgttttggtc 218  Q
    |||| || ||||||| |||||| || | |||||||||||| |||||||||||| |||||||||||||||||||||||||||  || || || |||||||     
T  13550647 tgagtcgtcttaggggtagggttggtgttggtggtagcggctggtttgaggatcaggtgttgaggagagttggtgatggggcagatacatcattttggtt 13550548  T
Q  219 taataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgtt 318  Q
      |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||    
T  13550547 cgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgctttctgtt 13550448  T
Q  319 gattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    |||||||| | ||||||||| | |||||||||||||||||||||||||    
T  13550447 gattcggagcagtggggggatgtgtggaggtggagacgtaggttatgg 13550400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 13551193 - 13550880
Alignment:
Q  19 agaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggagg 118  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||    
T  13551193 agaggtgatttgtggtatagggttttagttgccagatatggcgaattaggtggcaggttggggg-------ccggagagtttcttgttggtggtcggagg 13551101  T
Q  119 tgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcgttttggtc 218  Q
    |||| || ||||||| |||||| || | |||||||||||| |||||||||||| |||||||||||||||||||||||||||  || || || |||||||     
T  13551100 tgagtcgtcttaggggtagggttggtgttggtggtagcggctggtttgaggatcaggtgttgaggagagttggtgatggggcagatacatcattttggtt 13551001  T
Q  219 taataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgtt 318  Q
      |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||    
T  13551000 cgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgctttctgtt 13550901  T
Q  319 gattcggaacggtggggggag 339  Q
    |||||||| | ||||||||||    
T  13550900 gattcggagcagtggggggag 13550880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 210 - 366
Target Start/End: Complemental strand, 43627931 - 43627775
Alignment:
Q  210 gttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttg 309  Q
    |||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43627931 gtttaggtctgataggtggataggggagtctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgttcgtggccgacttg 43627832  T
Q  310 ctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    |||||| ||||||||||  |||||||||||| |||||||||||||||||||||||||    
T  43627831 ctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatgg 43627775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 45422151 - 45422025
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||||| |||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||| | ||||| || || ||||||||    
T  45422151 tggtggacaaaggtggtttgtggtatagtgtcttagttgccaggtatggcgaattaggtggcaggttggaggttgggggtcggagtgtgtcgtgttggtg 45422052  T
Q  111 gtcggaggtgaggcgacttagggatag 137  Q
    |  ||||||||| ||  ||||||||||    
T  45422051 gagggaggtgagtcgtattagggatag 45422025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 33548197 - 33548148
Alignment:
Q  317 ttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  33548197 ttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgg 33548148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 28400077 - 28400151
Alignment:
Q  29 tgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttctt 103  Q
    ||||||||  ||||||||||||  | ||||||||| ||||||| ||||||||||| ||| ||||||| |||||||    
T  28400077 tgtggtatcaggttttagtcgctcgttatggcgaagtaggtgggaggttggaggtggggggccggagtgtttctt 28400151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 15018306 - 15018227
Alignment:
Q  13 gtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccg 92  Q
    ||||| || ||||| || |||||||| |||||||||||  | ||||||||| || |||| ||||||||||||||| ||||    
T  15018306 gtggataggggtggattttggtatagagttttagtcgctcgttatggcgaagtatgtgggaggttggaggttgggggccg 15018227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 43310875 - 43310790
Alignment:
Q  26 gtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtgg 111  Q
    |||||||||||||||| || || || |||||||||||    | ||| ||||||||||||||| ||||||| | ||||| |||||||    
T  43310875 gtttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtgg 43310790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 1380681 - 1380629
Alignment:
Q  43 ttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||||| | ||||||||| |||| || ||||||||||||||| |||||||    
T  1380681 ttagtcgcccgttatggcgaagtaggcgggaggttggaggttgggggccggag 1380629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 9668532 - 9668624
Alignment:
Q  28 ttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggaggtg 120  Q
    ||||||||||| ||| |||||||| | ||||||||  | || || ||||||||||||||| |||||||   ||||| |||||||  |||||||    
T  9668532 ttgtggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccggagttgttcttattggtggagggaggtg 9668624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 11028489 - 11028425
Alignment:
Q  23 gtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttggg 87  Q
    |||||||||||||  | |||||||||||| | || |||||| ||||||| |||||||||| ||||    
T  11028489 gtggtttgtggtaccgagttttagtcgcccgttacggcgaagtaggtggaaggttggaggatggg 11028425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 35488439 - 35488387
Alignment:
Q  40 gttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccg 92  Q
    |||||||||||| | ||||||||| ||||||| ||||||||||| ||| ||||    
T  35488439 gttttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggccg 35488387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 45421897 - 45421841
Alignment:
Q  265 ttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgat 321  Q
    ||||||||||||||||||||||||   ||||  ||||| |||||| |||||||||||    
T  45421897 ttgtttgagttaacagagaataagctcatgtatgtggcagacttgttctctgttgat 45421841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 13440684 - 13440329
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  13440684 tggtggatagaggtggtttgtggtatcgggttttagtcgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcttgctggtg 13440585  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||  ||||||    
T  13440584 gtcggaggtgaggcgtcttagggatggggtaggcgatggtggtagcgggtggtttggggatcaggtgttgaggagagttggtgatggggttgttacttcg 13440485  T
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13440484 ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgc 13440385  T
Q  311 tctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  13440384 tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatgg 13440329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 15653216 - 15653369
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||||||||||||||||  ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| || || ||||||||    
T  15653216 tggtggacagaggtggtttg--gtatagggtcttagttgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtgtcgtgttggtg 15653313  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttg 166  Q
    |  ||||||||| || ||||||||||| || || || |||| | | ||||||||||    
T  15653314 gagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttg 15653369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 46626450 - 46626369
Alignment:
Q  14 tggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||    
T  46626450 tggacagaggtggtttgtggtatagtgtcttagttgccaggtatggcgaattaggtggcaggttggaggttgggggccggag 46626369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 250
Target Start/End: Original strand, 12378299 - 12378476
Alignment:
Q  73 aggttggaggttgggagccggagagtttcttgttggtggtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggatt 172  Q
    ||||||||||||||  ||| ||| || ||||||||||||  |||||||||  |  ||||||| |||| ||| ||||||||||| || ||||||||         
T  12378299 aggttggaggttggtggccagagtgtatcttgttggtggagggaggtgagttgtattagggaaaggggaggtgatggtggtagtggatggtttgatagcc 12378398  T
Q  173 aggtgttgaggagagttggtgatggggttgacacttcgttttggtctaataggtggataggggaggctcctctttgtg 250  Q
    | |||||| |||| |||||||||| || ||| ||  ||||||||| | |||||||||||||||| | |||||| ||||    
T  12378399 atgtgttgcggagggttggtgatgaggctgatacaacgttttggtatgataggtggataggggatgttcctctctgtg 12378476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 18671772 - 18671709
Alignment:
Q  40 gttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttctt 103  Q
    |||||||||||  | ||||||||| ||||||| ||||||||||| ||| ||||||| |||||||    
T  18671772 gttttagtcgctcgttatggcgaagtaggtgggaggttggaggtggggggccggagtgtttctt 18671709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 18768022 - 18767947
Alignment:
Q  28 ttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttctt 103  Q
    |||||||||  |||||||||| || | |||||| || ||||||| ||||||||||| ||| ||||||| |||||||    
T  18768022 ttgtggtatcaggttttagtctcccgttatggcaaagtaggtgggaggttggaggtggggggccggagtgtttctt 18767947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 34457684 - 34457759
Alignment:
Q  28 ttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttctt 103  Q
    |||||||||  |||||||||| || | |||||| || ||||||| ||||||||||| ||| ||||||| |||||||    
T  34457684 ttgtggtatcaggttttagtcacccgttatggcaaagtaggtgggaggttggaggtggggggccggagtgtttctt 34457759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 45993204 - 45993098
Alignment:
Q  13 gtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggt 112  Q
    ||||| || |||||||| |||||||| |||||||||||| | ||||||||  |  |||| ||||||||||||||| |||||||   ||||| |||||||     
T  45993204 gtggataggggtggtttttggtatagagttttagtcgcccgttatggcgaggtgtgtgggaggttggaggttggg-gccggagttgttcttcttggtggc 45993106  T
Q  113 cggaggtg 120  Q
     |||||||    
T  45993105 gggaggtg 45993098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 41340135 - 41340086
Alignment:
Q  40 gttttagtcgccagatatggcgaattaggtggcaggttggaggttgggag 89  Q
    |||||||||||| ||||||||||  ||||||| |||||||||||| ||||    
T  41340135 gttttagtcgcccgatatggcgaggtaggtgggaggttggaggtttggag 41340086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 36227703 - 36227759
Alignment:
Q  55 tatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtgg 111  Q
    ||||||||| ||||||| ||||||||||| ||| ||||||| | ||||| |||||||    
T  36227703 tatggcgaagtaggtgggaggttggaggtggggggccggagtgattcttcttggtgg 36227759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 46624069 - 46624013
Alignment:
Q  266 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgatt 322  Q
    ||||||||||||| |||||||||   ||||| ||||| |||||| ||||||||||||    
T  46624069 tgtttgagttaacggagaataagctcatgtctgtggcagacttgttctctgttgatt 46624013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 48072940 - 48073295
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  48072940 tggtggatagaggtggtttgtggtatcgggttttagtcgacaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcttgctggtg 48073039  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||  ||||||    
T  48073040 gtcggaggtgaggcgtcttagggatggggtaggcgatggtggtagcgggtggtttggggatcaggtgttgaggagagttggtgatgcggttgttacttcg 48073139  T
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48073140 ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgc 48073239  T
Q  311 tctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  48073240 tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgg 48073295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 32352819 - 32353161
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||| || |||||    
T  32352819 tggtggatagaggtggtttgtggtatagggttttagtcgctaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcatgctggtg 32352918  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    ||||||||||||||| |||||||||             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32352919 gtcggaggtgaggcgtcttagggat-------------gtggtagcgggtggtttgaggatcaggtgttgaggagagttggtgatggggttgacacttcg 32353005  T
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    ||||||||| ||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32353006 ttttggtctgatatgtggataggggaggctcctctttgtgtgcgatttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 32353105  T
Q  311 tctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  32353106 tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgg 32353161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 37531188 - 37530842
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttc-ttgttggt 109  Q
    |||| ||||||||||| |||||||||||||||||||| | ||| |||||||| |||||||||||||||| ||       |||||||||||| ||||||||    
T  37531188 tggtagacagaggtgggttgtggtatagggttttagttgtcaggtatggcgagttaggtggcaggttggggg-------ccggagagtttcattgttggt 37531096  T
Q  110 ggtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttc 209  Q
    ||||||||||||| || |||||||  ||||  ||||||||||||||||| |||||||||||| |||||   |||||||||| |||||||| ||| |||||    
T  37531095 ggtcggaggtgagtcgtcttagggtgagggatggagatggtggtagcggctggtttgaggatcaggtg---aggagagttgatgatggggctgatacttc 37530999  T
Q  210 gttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttg 309  Q
    |||||||||| |||||||| ||||||||| |||||||||||||||  |||| ||||||||||||||||||||||||||| ||||||  ||||| ||||||    
T  37530998 gttttggtctgataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagactatgtatgtggcagacttg 37530899  T
Q  310 ctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||    
T  37530898 ctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatgg 37530842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 366
Target Start/End: Complemental strand, 21528586 - 21528441
Alignment:
Q  221 ataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttga 320  Q
    |||||||| ||||||| | |||| |||||||  | ||| |  || ||||||||||||||||||||||||  ||||| || |  |||||| ||||||||||    
T  21528586 ataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaacagagaataagttcatgtctgttggagacttgttctctgttga 21528487  T
Q  321 ttcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    |||||| |  |||||||    |||||||||||||||||||||||||    
T  21528486 ttcggagcaatggggggttatgtggaggtggagacgtaggttatgg 21528441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 28097491 - 28097583
Alignment:
Q  27 tttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggaggtg 120  Q
    |||||||||| | |||||||||||| | ||||||||| ||||||| ||||||||||||||| |||||||   ||||| |||||||  |||||||    
T  28097491 tttgtggtatcgagttttagtcgcccgttatggcgaagtaggtgggaggttggaggttggg-gccggagttattcttcttggtggagggaggtg 28097583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 10710718 - 10710782
Alignment:
Q  23 gtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttggg 87  Q
    ||||||| |||||| | || ||||||||| | ||||||||| ||||||| |||||||||||||||    
T  10710718 gtggtttttggtatcgagtcttagtcgcccgttatggcgaagtaggtgggaggttggaggttggg 10710782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 39430891 - 39430799
Alignment:
Q  28 ttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggaggtg 120  Q
    ||||||||||| ||| |||||||| | ||||||||  | ||||| ||||||||||||||| |||||||   ||||| |||||||  |||||||    
T  39430891 ttgtggtatagtgttctagtcgcccgttatggcgaggttggtgggaggttggaggttgggggccggagttgttcttattggtggagggaggtg 39430799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 25504505 - 25504579
Alignment:
Q  13 gtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttggg 87  Q
    ||||| || |||||||| |||||||| |||||||||||| | ||||||||  |  |||| |||||||||||||||    
T  25504505 gtggataggggtggtttttggtatagagttttagtcgcccgttatggcgaggtgtgtgggaggttggaggttggg 25504579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 29140055 - 29139934
Alignment:
Q  34 tatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggaggtgaggcgacttaggg 133  Q
    |||||||| ||||| |  || |||| ||||||||||||||  ||||||| |||| ||||||| |||||  ||||||||  |||| |||| ||  ||||||    
T  29140055 tatagggtattagttgttaggtatgacgaattaggtggcaaattggaggatgggggccggagtgtttcaagttggtggcgggagttgagtcggattaggg 29139956  T
Q  134 atagggtaggagatggtggtag 155  Q
    | ||||  || |||||||||||    
T  29139955 aaaggggcggtgatggtggtag 29139934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 7396242 - 7396298
Alignment:
Q  22 ggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttg 78  Q
    |||||||| || ||||| |||||||||||| | ||||||||| ||||||| ||||||    
T  7396242 ggtggtttttgatatagagttttagtcgcccgctatggcgaagtaggtgggaggttg 7396298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 30110466 - 30110510
Alignment:
Q  43 ttagtcgccagatatggcgaattaggtggcaggttggaggttggg 87  Q
    ||||||||| | ||||||||| ||||||| |||||||||||||||    
T  30110466 ttagtcgcccgttatggcgaagtaggtgggaggttggaggttggg 30110510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 34481579 - 34481223
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    |||| ||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  34481579 tggtagacagaggtgggttgtggtatagggttttagccgccaggtatggcgagttaggtggcaggttggaggttgggggccggagagtttcttgttggtg 34481480  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggttt-gaggattaggtgttgaggagagttggtgatggggttgacacttc 209  Q
    || ||||||||| || |||||||  ||||  |||| |||||||||||| |||||| |||||| ||||||||||||||||||||||||||| ||| |||||    
T  34481479 gttggaggtgagtcgtcttagggtgagggatggagttggtggtagcggctggttttgaggatcaggtgttgaggagagttggtgatggggctgatacttc 34481380  T
Q  210 gttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttg 309  Q
    |||||||||  |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||  | |||    
T  34481379 gttttggtccgataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatgtctgtggcatatttg 34481280  T
Q  310 ctctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||    
T  34481279 ctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatgg 34481223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 10486429 - 10486780
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||||| || |||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  10486429 tggtggacatagatggtttgtggtatacggttttagttgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcgtgttggtg 10486528  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    |  ||||||||| || ||||||| ||| |  || ||||| |   || | |||||||  ||| | |||   ||||| ||||| ||||| | ||| || | |    
T  10486529 gagggaggtgagtcgtcttaggggtagtgatggtgatggagagtgcagctggtttgttgatcatgtggctaggagggttggagatggagctgatacgttg 10486628  T
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    |||||||   |||||||| |||||||   |||| |||||||  | ||| |  || |||||||||||||| |||||||||  ||||| ||||| ||||||     
T  10486629 ttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaacatagaataagttcatgtctgtggcagacttgt 10486728  T
Q  311 tctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggtt 362  Q
    |||||||||||||||| | | ||||||    |||||||||||||||||||||    
T  10486729 tctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggtt 10486780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 588140 - 588070
Alignment:
Q  9 gctggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttgg 79  Q
    |||||| || ||| ||||||| ||||||||||| ||||| ||||||||||||||||||| ||| |||||||    
T  588140 gctggttgatagatgtggtttatggtatagggtgttagttgccagatatggcgaattagatgggaggttgg 588070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 38358081 - 38358008
Alignment:
Q  28 ttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttc 101  Q
    |||||||||  | ||||||||||| | ||||||||| ||||||| ||||||||||| ||| ||||||| |||||    
T  38358081 ttgtggtatcagattttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggccggagtgtttc 38358008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 20208241 - 20208312
Alignment:
Q  23 gtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||| |||||| | || ||||||||| | ||||||||| ||||||| ||||||||||||||| |||||||    
T  20208241 gtggtttttggtatcgagtcttagtcgcccg-tatggcgaagtaggtgggaggttggaggttgggggccggag 20208312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 35122232 - 35122287
Alignment:
Q  28 ttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggt 83  Q
    |||||||||  ||||||||||||| | ||||||||| ||||||| |||||||||||    
T  35122232 ttgtggtatcaggttttagtcgcccgttatggcgaaataggtggaaggttggaggt 35122287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 31864863 - 31864797
Alignment:
Q  13 gtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttgg 79  Q
    ||||| ||||| || || ||||||||||||||| || |||| ||||||||| ||||||| |||||||    
T  31864863 gtggatagaggaggcttatggtatagggttttaatcaccagctatggcgaaataggtgggaggttgg 31864797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 7e-71; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 211 - 366
Target Start/End: Original strand, 16420719 - 16420874
Alignment:
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16420719 ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc 16420818  T
Q  311 tctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggttatgg 366  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  16420819 tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgg 16420874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 322
Target Start/End: Complemental strand, 7452983 - 7452672
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||||||||||||||||||||||||| | |||||  |||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  7452983 tggtggacagaggtggtttgtggtataggatcttagtttccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcgtgttggtg 7452884  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    |  ||||||||| || ||||||||||| || || || |||| | | |||||||||   |   | |||   ||||| ||||| |||||   ||| || | |    
T  7452883 gagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttctcgcccacgtggctaggagggttggagatggttctgatacgttg 7452784  T
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    ||||||| | |||||||| ||||||| | |||| | |||||  | ||| |  |  ||||||||||||| |||||||||  |||||| ||||| ||||||     
T  7452783 ttttggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggagaataagcttatgtctgtggcagacttgt 7452684  T
Q  311 tctctgttgatt 322  Q
    ||||||||||||    
T  7452683 tctctgttgatt 7452672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 36157772 - 36157676
Alignment:
Q  23 gtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtggtcggaggtg 120  Q
    |||||||||||||| | |||||||||||| | ||||||||| ||||||| ||||||||||||||| |||||||   ||||| |||||||  |||||||    
T  36157772 gtggtttgtggtattgagttttagtcgcccg-tatggcgaagtaggtgggaggttggaggttgggggccggagttgttcttcttggtggagggaggtg 36157676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 44082538 - 44082613
Alignment:
Q  28 ttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttctt 103  Q
    |||||||||  ||||||||||||| | ||||||||| ||||||| ||||||||||| ||| | ||||| |||||||    
T  44082538 ttgtggtatcaggttttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggtcggagtgtttctt 44082613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 6901526 - 6901440
Alignment:
Q  25 ggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtgg 111  Q
    ||||||||||||   |||||||||||| | ||||||||  ||||||| ||||||||||||||| |||| || | ||||| |||||||    
T  6901526 ggtttgtggtatcatgttttagtcgcccgttatggcgaggtaggtgggaggttggaggttgggggccgaagtggttcttcttggtgg 6901440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 17659430 - 17659378
Alignment:
Q  43 ttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||||| | ||||||||| ||||||| ||||||||||||||| |||||||    
T  17659430 ttagtcgcccgttatggcgaagtaggtgggaggttggaggttgggggccggag 17659378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 134363 - 134714
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  134363 tggtggatagagatggtttgtggtatagggttttagttgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcatgttggtg 134462  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    |  ||||||||| || ||||||| ||| |  || | ||| |  || || |||||||  |||   |||   ||||| ||||| ||||| | | | || | |    
T  134463 gagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatggagctaatacgttg 134562  T
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    |||||||   |||||||| ||||||| | |||| |||||||  | ||  |  || |||||||||||||||||||||||| |||||| ||||| ||||||     
T  134563 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt 134662  T
Q  311 tctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggtt 362  Q
    | ||| |||||||||| | ||||||||    |||||||||||||||||||||    
T  134663 tatctattgattcggagcagtggggggttttgtggaggtggagacgtaggtt 134714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 312190 - 312541
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  312190 tggtggatagagatggtttgtggtatagggttttagttgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcatgttggtg 312289  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    |  ||||||||| || ||||||| ||| |  || | ||| |  || || |||||||  |||   |||   ||||| ||||| ||||| | | | || | |    
T  312290 gagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatggagctaatacgttg 312389  T
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    |||||||   |||||||| ||||||| | |||| |||||||  | ||  |  || |||||||||||||||||||||||| |||||| ||||| ||||||     
T  312390 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt 312489  T
Q  311 tctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggtt 362  Q
    | ||| |||||||||| | ||||||||    |||||||||||||||||||||    
T  312490 tatctattgattcggagcagtggggggttttgtggaggtggagacgtaggtt 312541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 327644 - 327995
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    ||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  327644 tggtggatagagatggtttgtggtatagggttttagttgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttcatgttggtg 327743  T
Q  111 gtcggaggtgaggcgacttagggatagggtaggagatggtggtagcgggtggtttgaggattaggtgttgaggagagttggtgatggggttgacacttcg 210  Q
    |  ||||||||| || ||||||| ||| |  || | ||| |  || || |||||||  |||   |||   ||||| ||||| ||||| | | | || | |    
T  327744 gagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatggagctaatacgttg 327843  T
Q  211 ttttggtctaataggtggataggggaggctcctctttgtgtgaggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgc 310  Q
    |||||||   |||||||| ||||||| | |||| |||||||  | ||  |  || |||||||||||||||||||||||| |||||| ||||| ||||||     
T  327844 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt 327943  T
Q  311 tctctgttgattcggaacggtggggggaggcgtggaggtggagacgtaggtt 362  Q
    | ||| |||||||||| | ||||||||    |||||||||||||||||||||    
T  327944 tatctattgattcggagcagtggggggttttgtggaggtggagacgtaggtt 327995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 8235 - 8110
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggagagtttcttgttggtg 110  Q
    |||||||||||||||||||||||||||| || ||||| || || |||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||||    
T  8235 tggtggacagaggtggtttgtggtatagtgtcttagttgctaggtatggcgaattaggtggcagattggaggttgggggccggagtgtttcgtgttggtg 8136  T
Q  111 gtcggaggtgaggcgacttagggatag 137  Q
    |  ||||||||| ||  ||||||||||    
T  8135 g-gggaggtgagtcgtattagggatag 8110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 4065 - 4133
Alignment:
Q  11 tggtggacagaggtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttgg 79  Q
    ||||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  4065 tggtggatagagatggtttgtggtatagggttttagttgccaggtatggcgaattaggtggcaggttgg 4133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 8151 - 8079
Alignment:
Q  23 gtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||| |||||| | || ||||||||| | |||| |||| ||||||| ||||||||||||||| |||||||    
T  8151 gtggtttttggtatcgagtcttagtcgcccgttatgacgaagtaggtgggaggttggaggttgggggccggag 8079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 13085 - 13013
Alignment:
Q  23 gtggtttgtggtatagggttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||| |||||| | || ||||||||| | |||| |||| ||||||| ||||||||||||||| |||||||    
T  13085 gtggtttttggtatcgagtcttagtcgcccgttatgacgaagtaggtgggaggttggaggttgggggccggag 13013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 17747 - 17692
Alignment:
Q  40 gttttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    |||||||||||| | ||||||||| ||||||| ||||||||||| |||||| ||||    
T  17747 gttttagtcgcccgttatggcgaaataggtgggaggttggaggtggggagctggag 17692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 2414 - 2466
Alignment:
Q  43 ttagtcgccagatatggcgaattaggtggcaggttggaggttgggagccggag 95  Q
    ||||||||| | ||||||||| | ||||| ||||||||||||||| |||||||    
T  2414 ttagtcgcccgttatggcgaagtgggtgggaggttggaggttgggggccggag 2466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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