View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_55 (Length: 385)
Name: NF10140A_low_55
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 379
Target Start/End: Original strand, 33662295 - 33662664
Alignment:
| Q |
11 |
atgaataagaatttagtatcatatggttgtgattttaatttgttctaggaagaaaagaatatggtttttccggaacttctttgccgtcaataaaattcga |
110 |
Q |
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| T |
33662295 |
atgaataagaatttagtatcatatggttgtgattttaatttgttctaggaagaaaagaatatggtttttccggaacttctttgccgtcaataaaattcga |
33662394 |
T |
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| Q |
111 |
cattcgtcgatgtgatattaactacttgatagggacaattcattgtaatatgtatagtcgaggtttaaactcggacactccactaatttatctataagag |
210 |
Q |
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| T |
33662395 |
cattcgtcgatgtgatattaactaattgatagggacaattcattgtaatatgtatagtcgaggtttgaactcggacactccactaatttatctataagag |
33662494 |
T |
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| Q |
211 |
atgaatttctaacgataaaatgctaaaatgtttgaagttaaagtttaaacaactcattaattaaaaaatgataaacaactatctc-nnnnnnnnggggca |
309 |
Q |
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| T |
33662495 |
atgaatttctaacgataaaatgctaaaatgtttgaagttaaagtttaaacaactcattaattaaaaaatgataaacaactatctctttttttttggggta |
33662594 |
T |
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| Q |
310 |
cattaaacaactatatctaccttaatttgaataatgaaagcaacaattctgcggatatgatagtcctaag |
379 |
Q |
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| T |
33662595 |
cattaaacaactatatctaccttaatttgaataatgaaagcaacaattctgcggatatgatagtcctaag |
33662664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 359
Target Start/End: Original strand, 33672083 - 33672130
Alignment:
| Q |
312 |
ttaaacaactatatctaccttaatttgaataatgaaagcaacaattct |
359 |
Q |
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||||||||||||||||||||||| | |||||||||||| ||||||||| |
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| T |
33672083 |
ttaaacaactatatctaccttaaatggaataatgaaagaaacaattct |
33672130 |
T |
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