View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_57 (Length: 383)
Name: NF10140A_low_57
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 5 - 379
Target Start/End: Complemental strand, 40061368 - 40060980
Alignment:
| Q |
5 |
tactcaatgcagggaattttccagagaaagattgacaaactggatgagttttagttacaaaataaattctatccaaagacgcgaaataagataaacgggc |
104 |
Q |
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| T |
40061368 |
tactcaatgcagggaattttccagagaaagattgacaaactggatgagttttagttacaaaataaattctatcctaagacgcgaaataagataaacgggc |
40061269 |
T |
|
| Q |
105 |
aaaaatttcaatataaaccgcctctacctctaggtttggaccaagagaagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggcc |
204 |
Q |
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| T |
40061268 |
aaaaatttcaatataaaccgcctctacctctaggtttggaccaagagaagtaatcttaggttctgtagctattaacgcttcctcacaaagctttacggcc |
40061169 |
T |
|
| Q |
205 |
ttgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaa--------------aaaacacaattgtcc |
290 |
Q |
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| T |
40061168 |
ttgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaatatatattaaaaaacacaattgtcc |
40061069 |
T |
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| Q |
291 |
agtgtaatttctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcgatgtattaccagtggtacattt |
379 |
Q |
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| T |
40061068 |
agtgtaatttctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcgatgtattaccggtggtacattt |
40060980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 35 - 371
Target Start/End: Complemental strand, 40087228 - 40086887
Alignment:
| Q |
35 |
attgacaaactggatgagttttagttacaaaataaattctatccaaagacgcgaaataagat-----aaacgggcaaaaatttcaatataaaccgcctct |
129 |
Q |
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| T |
40087228 |
attgacaaaccagatgagttttagttacaaaataaattatatcctaagacgcggaataagatgtttcaaacgaacaaaaatttcaatataaaccatctat |
40087129 |
T |
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| Q |
130 |
acctctaggtttggaccaagagaagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgacccc |
229 |
Q |
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| T |
40087128 |
acctctaggtttggaccaagataagtaatcttgggttctgcggctattaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgacccc |
40087029 |
T |
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| Q |
230 |
acttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaacacaattgtccagtgtaatttctcttgtgcatataagaaataaactatgc |
329 |
Q |
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| T |
40087028 |
acttcggctgcctaataactcctgcagcatgtagcgaagatattaaaaaatccaatcgtccagtgtaatttctcttctacatataagaaataaactatcc |
40086929 |
T |
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| Q |
330 |
atgtgatattattaatttatcttcttcgatgtattaccagtg |
371 |
Q |
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| T |
40086928 |
atgtgatattatcaatttatcttcttcgatgtattaccagtg |
40086887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 104 - 358
Target Start/End: Complemental strand, 40079393 - 40079134
Alignment:
| Q |
104 |
caaaaatttcaatataaaccgcctctacctctaggtttggaccaagagaagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggc |
203 |
Q |
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|||||||||||||| | ||| ||| ||||||||||||| |||||||||| | ||||||||| || |||||||||| ||||| ||||||||||||| ||| |
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| T |
40079393 |
caaaaatttcaatacataccacctatacctctaggttttgaccaagagatgaaatcttgggatcagtagctattagtgcttcttcacaaagctttatggc |
40079294 |
T |
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| Q |
204 |
cttgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaaa-aaacac----aattgtccagtgtaat |
298 |
Q |
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| T |
40079293 |
cttgtgtacatctttaagatgaccccacttttgctgcctaataattcctgcagcgtatagtagagatattaaacacacacagaaaattgtccagtgtaat |
40079194 |
T |
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| Q |
299 |
ttctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcga |
358 |
Q |
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| T |
40079193 |
ttctcttctaaataaaagaaaataactatgcgtgtaatattattaatttatcttcttcga |
40079134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 22014230 - 22014313
Alignment:
| Q |
172 |
gctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgca |
255 |
Q |
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| T |
22014230 |
gctatcaatgcttcttcacaaagctttatggccttgtgcaaatctttaagatgaccccatttgggctgtctaatatctcctgca |
22014313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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