View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_58 (Length: 382)
Name: NF10140A_low_58
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 32473071 - 32472717
Alignment:
| Q |
18 |
acaatctaccccaacacaccttccatcatctacaacgacaccgttttcacatggtctcaaacccacaaacgatgcctccaacttgcctccgccatcacct |
117 |
Q |
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| T |
32473071 |
acaatctaccccaacacaccttccatcatctacaacgacaccgttttcacatggtctcaaacccacaaacgatgcctccaacttgcctccgccatcacct |
32472972 |
T |
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| Q |
118 |
ccttaggtatccgccgcggcaacgtcgtctccgtcatcgctcccaacatccccgccatgtatgaactccacttcgccgttcccttcaccggagctatcct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32472971 |
ccttaggtatccgccgcggcaacgtcgtctccgtcatcgctcccaacatccccgccatgtatgaactccacttcgccgtccccttcaccggagctatcct |
32472872 |
T |
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| Q |
218 |
taacaacatcaacacgcgccttgacgcgcgtatcatcgccaacatcctcctccactgcgaatccaaactcgttttcgtagatatcgccgcacgtgatctt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32472871 |
taacaacatcaacacgcgccttgacgcgcgtatcatctccaacatcctcctccactgcgaatccaaactcgttttcgtggatatcgccgcacgtgatctt |
32472772 |
T |
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| Q |
318 |
gttctccaagctttatccttattcccttcaaaacaacataaacctctccttattc |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32472771 |
gttctccaagctttatccttattcccttcaaaacaacataaacctctccttattc |
32472717 |
T |
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