View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_6 (Length: 545)
Name: NF10140A_low_6
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 7 - 538
Target Start/End: Original strand, 23333316 - 23333847
Alignment:
| Q |
7 |
ttaatggtcaagatagaaagactccataagaaaaaatacggcagtccaaaaagaatccaccacactggttgcaaatttgttatactttttgggagtatta |
106 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23333316 |
ttaatggtcaagacagaaagactccataagaaaaaatacagcagtccaaaaagaatccaccacactggttgcaaatttgttataccttttgggagtatta |
23333415 |
T |
|
| Q |
107 |
cacatggctagaggcaaactcctaaaatgttcgcaatttatcttatgccctgtcgtgcgcatcttcgtaatgacgacattaagcaagccaacgaaatcat |
206 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333416 |
cacatagctagaggcaaactcctaaaatgttcgcaatttatcttatgccccatcgtgcgcatcttcgtaatgacgacattaagcaagccaacgaaatcat |
23333515 |
T |
|
| Q |
207 |
ttgaattagggattttgtccaacgtaattcagcatattataatgattgtttcatcagaaagcagttgacatataaaaaatcacttacagttgcggtctca |
306 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333516 |
ttgaattagggattttgtccaacgtaagtcagcatattataatgattgttccatcagaaagcagttgacatataaaaaatcacttacagttgcggtctca |
23333615 |
T |
|
| Q |
307 |
agctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggtaacgacaatgtgtacatttt |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23333616 |
agctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggcaacgacaatgtgtacatttt |
23333715 |
T |
|
| Q |
407 |
tcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctctttgggggagtactgcttcagctgcattctggc |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
23333716 |
tcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctcttggggggagtactgcttcagctgcattccggc |
23333815 |
T |
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| Q |
507 |
acacaattttatcggtcaacttcgtgatgtcc |
538 |
Q |
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||||||||||||||||||||||||| |||||| |
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| T |
23333816 |
acacaattttatcggtcaacttcgttatgtcc |
23333847 |
T |
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