View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_62 (Length: 377)
Name: NF10140A_low_62
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_62 |
 | |
|
| [»] scaffold0246 (2 HSPs) |
| | |
|
| [»] scaffold0262 (1 HSPs) |
| | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
| [»] scaffold0251 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 339
Target Start/End: Original strand, 6705306 - 6705640
Alignment:
| Q |
9 |
ttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctaacattgtcatgccgagacctatgtaccaggatatttttgttgaccaggagt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
6705306 |
ttctaccgtgtatcccatcctctcatcgtcaaccctgctctagagcatgacattgtcatgccgagacctgtgtaccaggatattcttgttgactaggagt |
6705405 |
T |
|
| Q |
109 |
gggccagacatcctcccgatccattgcaggtcatcagcagcatttgagacagagtagagcatgcgatgcagattccagaggtggtttcaaattcactctt |
208 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
6705406 |
gggccatacatcctcccgatccattgcaggtcatcaacagcatgagagacagagtggagcatgcgatgcagatttcagaggtggtttcaaatccactctt |
6705505 |
T |
|
| Q |
209 |
ctttggcattttggagggcctccggccc----gattacaacgtgtttgaccatcagtaggttccgaggaggaggtttaggagtcatagtccgcaggagta |
304 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||| |||||||||||||||||| ||||| |||||||||||| |||||||||||||||||| ||| | |
|
|
| T |
6705506 |
ctttggcattttggagggccttcggaccgattgattataacgtgtttgaccatcagcaggtttcgaggaggaggtctaggagtcatagtccgcatgagca |
6705605 |
T |
|
| Q |
305 |
gcagcagtatggtcttagtcttagtttatgacttg |
339 |
Q |
| |
|
||| ||||| |||||||||||| |||||||||||| |
|
|
| T |
6705606 |
gcaacagtagggtcttagtctttgtttatgacttg |
6705640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 3 - 323
Target Start/End: Complemental strand, 39686091 - 39685771
Alignment:
| Q |
3 |
aggtggttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctaacattgtcatgccgagacctatgtaccaggatatttttgttgacc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
39686091 |
aggtggttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctgacattgtcgtgccgagacctgtgtaccaggatattcatgttgacc |
39685992 |
T |
|
| Q |
103 |
aggagtgggccagacatcctcccgatccattgcaggtcatcagcagcatttgagacagagtagagcatgcgatgcagattccagaggtggtttcaaattc |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || ||| ||| ||||| |||||||| |||||||||||||||||||||| |||| | |
|
|
| T |
39685991 |
aggagtgggtcagacatcctcccgatccattgcaggtcatcaacaacatcagaggtagagtggagcatgccatgcagattccagaggtggttttaaatcc |
39685892 |
T |
|
| Q |
203 |
actcttctttggcattttggagggcctccggcccgattacaacgtgtttgaccatcagtaggttccgaggaggaggtttaggagtcatagtccgcaggag |
302 |
Q |
| |
|
|||||||||| |||| |||||| ||||||| ||||||| | |||||||||| |||||||||| ||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
39685891 |
actcttctttagcatcttggagagcctccgaaccgattatagcgtgtttgacgatcagtaggtaccgaggaggaggtctaggagtcatagcccgcaggag |
39685792 |
T |
|
| Q |
303 |
tagcagcagtatggtcttagt |
323 |
Q |
| |
|
|||| ||||| ||||||||| |
|
|
| T |
39685791 |
cagcatcagtagggtcttagt |
39685771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 3 - 321
Target Start/End: Original strand, 13839898 - 13840216
Alignment:
| Q |
3 |
aggtggttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctaacattgtcatgccgagacctatgtaccaggatatttttgttgacc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13839898 |
aggtggttctaccgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctatgtaccaggatattcttgttgacc |
13839997 |
T |
|
| Q |
103 |
aggagtgggccagacatcctcccgatccattgcaggtcatcagcagcatttgagacagagtagagcatgcgatgcagattccagaggtggtttcaaattc |
202 |
Q |
| |
|
|| ||||||| |||||||||||||||||||| ||| |||||||||||||| || || ||| ||||||||||||| |||| |||||||||||||||| |
|
|
| T |
13839998 |
agtagtgggctagacatcctcccgatccattccagatcatcagcagcattagaagcatagtgtagcatgcgatgcacattcgagaggtggtttcaaatct |
13840097 |
T |
|
| Q |
203 |
actcttctttggcattttggagggcctccggcccgattacaacgtgtttgaccatcagtaggttccgaggaggaggtttaggagtcatagtccgcaggag |
302 |
Q |
| |
|
||| ||||| |||| ||||| ||||||| | ||||||||| |||||||||| ||||| ||||||| |||| ||||| |||||||||||||||||||||| |
|
|
| T |
13840098 |
actattcttcagcatcttggaaggcctccagaccgattacagcgtgtttgacgatcagcaggttccaaggaagaggtctaggagtcatagtccgcaggag |
13840197 |
T |
|
| Q |
303 |
tagcagcagtatggtctta |
321 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
13840198 |
cagcagcagtagggtctta |
13840216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 44430936 - 44430699
Alignment:
| Q |
4 |
ggtggttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctaacattgtcatgccgagacctatgtaccaggatatttttgttgacca |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||| | |
|
|
| T |
44430936 |
ggtggttctaccgtgtatcccatcctctcatcgtcaaccctgctccatagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgacta |
44430837 |
T |
|
| Q |
104 |
ggagtgggccagacatcctcccgatccattgcaggtcatcagcagcatttgagacagagtagagcatgcgatgcagattccagaggtggtttcaaattca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44430836 |
ggagtgggccagacatcctcccgatccattgcaggtcatcagcagcattagaggcagagtggagcatgcgatgcagattccagaggtggtttcaaatcca |
44430737 |
T |
|
| Q |
204 |
ctcttctttggcattttggagggcctccggcccgatta |
241 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
44430736 |
ctcttcttcagcatcttggagggcctccggaccgatta |
44430699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 3 - 308
Target Start/End: Original strand, 21566220 - 21566525
Alignment:
| Q |
3 |
aggtggttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctaacattgtcatgccgagacctatgtaccaggatatttttgttgacc |
102 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||| ||||||| ||||| |||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
21566220 |
aggtggttctaccgtgtatgccatcctcttatcgtcaaccctgctcaagagcctgacattttcatgccgagacctgtctaccaggatattcttgttgacc |
21566319 |
T |
|
| Q |
103 |
aggagtgggccagacatcctcccgatccattgcaggtcatcagcagcatttgagacagagtagagcatgcgatgcagattccagaggtggtttcaaattc |
202 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||| || ||| ||| |||||| |||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
21566320 |
aggagtgggccagacatcctcctgatccattgcaagtcatcaacaacatgagaggcagagtggagcatgcgatgcagattcctgaggtggtttcaaatcc |
21566419 |
T |
|
| Q |
203 |
actcttctttggcattttggagggcctccggcccgattacaacgtgtttgaccatcagtaggttccgaggaggaggtttaggagtcatagtccgcaggag |
302 |
Q |
| |
|
||| ||||| |||||||||||||||| | | ||||||| | |||||||||||||||| |||||| ||||||||||| ||||||||||||||| || ||| |
|
|
| T |
21566420 |
acttttcttcagcattttggagggcctacagaccgattatagcgtgtttgaccatcagcaggttctgaggaggaggtctaggagtcatagtccacatgag |
21566519 |
T |
|
| Q |
303 |
tagcag |
308 |
Q |
| |
|
||||| |
|
|
| T |
21566520 |
cagcag |
21566525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 3 - 259
Target Start/End: Original strand, 53813931 - 53814186
Alignment:
| Q |
3 |
aggtggttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctaacattgtcatgccgagacctatgtaccaggatatttttgttgacc |
102 |
Q |
| |
|
||||| ||||| ||||||| | ||||||||||||||||| ||||||||||||| |||||||||||||||||||| | ||| |||||||| ||||||||| |
|
|
| T |
53813931 |
aggtgattctatagtgtatctcctcctctcatcgtcaaccttgctccagagcctgacattgtcatgccgagacctgtctactaggatattattgttgacc |
53814030 |
T |
|
| Q |
103 |
aggagtgggccagacatcctcccgatccattgcaggtcatcagcagcatttgagacagagtagagcatgcgatgcagattccagaggtggtttcaaattc |
202 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||| ||||||| | |
|
|
| T |
53814031 |
aggagtgggccagacatcctcccaatccattgcaggtcatcagcagcatgagagacagagtggagcatgcgatgcagattctagaggtgg-ttcaaatcc |
53814129 |
T |
|
| Q |
203 |
actcttctttggcattttggagggcctccggcccgattacaacgtgtttgaccatca |
259 |
Q |
| |
|
| ||||||||||||||||||||||||||| | ||||||| | |||||||||||||| |
|
|
| T |
53814130 |
attcttctttggcattttggagggcctccagaccgattatagtgtgtttgaccatca |
53814186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 24902169 - 24902260
Alignment:
| Q |
165 |
gagcatgcgatgcagattccagaggtggtttcaaattcactcttctttggcattttggagggcctccggcccgattacaacgtgtttgacca |
256 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||||| |||| || ||| ||||||||||||||||| || ||||||| | |||||||||||| |
|
|
| T |
24902169 |
gagcatgcaatggagattcttgaggtggtttcaaatccactattttttagcattttggagggcctctggtccgattataccgtgtttgacca |
24902260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 11423571 - 11423434
Alignment:
| Q |
6 |
tggttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctaacattgtcatgccgagacctatgtaccaggatatttttgttgaccagg |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||| | ||| | | | || | |||| | || ||||| || ||||||| |||| |
|
|
| T |
11423571 |
tggttctaccgtgtatcccatcctcttatcgtcagccctgctcccgttcctgagtacatagttcccaaacctgtctatcaggaggttattgttgagcagg |
11423472 |
T |
|
| Q |
106 |
agtgggccagacatcctcccgatccattgcaggtcatc |
143 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11423471 |
agtgggccagacatcctcccgatccattccaggtcatc |
11423434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 3 - 323
Target Start/End: Original strand, 25403177 - 25403502
Alignment:
| Q |
3 |
aggtggttctaccgtgtatcc-----catcctctcatcgtcaaccctgctccagagcctaacattgtcatgccgagacctatgtaccaggatatttttgt |
97 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||| | |||||||| ||| |||| |
|
|
| T |
25403177 |
aggtggttctaccgtgtatcccatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtctaccaggaaattcttgt |
25403276 |
T |
|
| Q |
98 |
tgaccaggagtgggccagacatcctcccgatccattgcaggtcatcagcagcatttgagacagagtagagcatgcgatgcagattccagaggtggtttca |
197 |
Q |
| |
|
|||||| |||||| |||||||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
25403277 |
tgaccaagagtggaccagacatcctcccgacccattgcaggtcatcagcaacatgagagacagagtggagcatgtgatgcagattccagaggtggtttct |
25403376 |
T |
|
| Q |
198 |
aattcactcttctttggcattttggagggcctccggcccgattacaacgtgtttgaccatcagtaggttccgaggaggaggtttaggagtcatagtccgc |
297 |
Q |
| |
|
||| |||||||||| ||| || |||||| ||| ||||||| |||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25403377 |
aatccactcttcttcaacatcttagagggcatccaaaccgattataacgtgtttgacgatcagcaggttccgaggaggaggtataggagtcatagtccgc |
25403476 |
T |
|
| Q |
298 |
aggagtagcagcagtatggtcttagt |
323 |
Q |
| |
|
||||||||||||| || ||||||||| |
|
|
| T |
25403477 |
aggagtagcagcaatagggtcttagt |
25403502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 2029986 - 2030234
Alignment:
| Q |
6 |
tggttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctaacattgtcatgccgagacctatgtaccaggatatttttgttgaccagg |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| | ||| | | || |||||| | ||||| || || ||||||| |||| |
|
|
| T |
2029986 |
tggttctaccgtgtatcccatcctcttatcgtcaaccctgctcccgttcctgagtacatagctcccagacctgtctaccaagaggttattgttgagcagg |
2030085 |
T |
|
| Q |
106 |
agtgggccagacatcctcccgatccattgcaggtcatcagcagcatttgagacagagtagagcatgcgatgcagattccagaggtggtttcaaattcact |
205 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||||||||| || ||| ||| | |||| |||||||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
2030086 |
agtgggtcaaacatcctcctgatccattgcaggtcatcaacaacatgagagtccgagtggagcatgcgatggagattccagaggtggcttcaaatccact |
2030185 |
T |
|
| Q |
206 |
cttctttggcattttggagggcctccggcccgattacaacgtgtttgac |
254 |
Q |
| |
|
||| || |||||||||||| |||| | ||||||| | |||||||||| |
|
|
| T |
2030186 |
ctttttcaacattttggagggtctcctgtccgattatatcgtgtttgac |
2030234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 34131295 - 34131353
Alignment:
| Q |
4 |
ggtggttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctaacatt |
62 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
34131295 |
ggtggttctaccgtgtatcccatcctcttatcgtcaaccctcctccagagcctgacatt |
34131353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 3 - 323
Target Start/End: Complemental strand, 628998 - 628678
Alignment:
| Q |
3 |
aggtggttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctaacattgtcatgccgagacctatgtaccaggatatttttgttgacc |
102 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| | |||||||||||| |||||||| |
|
|
| T |
628998 |
aggtggttctactgtgtatcccatcctctcatcgtcaaccctgctccagagcctgacattgtcatgtcaagacccttctaccaggatattcttgttgact |
628899 |
T |
|
| Q |
103 |
aggagtgggccagacatcctcccgatccattgcaggtcatcagcagcatttgagacagagtagagcatgcgatgcagattccagaggtggtttcaaattc |
202 |
Q |
| |
|
|| |||||||||||||||||| ||| || |||||||||||| ||||||| ||| |||| | |||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
628898 |
agtagtgggccagacatcctctcgaccctttgcaggtcatccgcagcatgagaggcagattggagcatgcgatgcagattccagaggtggtttctaatcc |
628799 |
T |
|
| Q |
203 |
actcttctttggcattttggagggcctccggcccgattacaacgtgtttgaccatcagtaggttccgaggaggaggtttaggagtcatagtccgcaggag |
302 |
Q |
| |
|
||||||||| ||| |||||||| |||||| ||||||| | |||||||||| ||||| |||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
628798 |
actcttcttcagcaacttggaggggctccggaccgattatagcgtgtttgacgatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgag |
628699 |
T |
|
| Q |
303 |
tagcagcagtatggtcttagt |
323 |
Q |
| |
|
| |||||||| ||||||||| |
|
|
| T |
628698 |
caacagcagtagggtcttagt |
628678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 166 - 308
Target Start/End: Original strand, 51719142 - 51719284
Alignment:
| Q |
166 |
agcatgcgatgcagattccagaggtggtttcaaattcactcttctttggcattttggagggcctccggcccgattacaacgtgtttgaccatcagtaggt |
265 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||| ||||||| | |||||||||| |||| |||| |
|
|
| T |
51719142 |
agcatgagaggcagattccagaggtggtttcaaatccactcttcttaagcatcttggagggcctccggaccgattatagcgtgtttgacgatcatcaggt |
51719241 |
T |
|
| Q |
266 |
tccgaggaggaggtttaggagtcatagtccgcaggagtagcag |
308 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| |||||| ||||| |
|
|
| T |
51719242 |
tccgaggaggaggtctaggactcatagtccacaggagcagcag |
51719284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 200
Target Start/End: Original strand, 38653298 - 38653426
Alignment:
| Q |
72 |
agacctatgtaccaggatatttttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcatcagcagcatttgagacagagtagagcatg |
171 |
Q |
| |
|
|||||| | |||||||| || ||||||| || ||||||||||||||||||||||| ||||| ||| ||||| ||| ||| ||| |||| | | ||||| |
|
|
| T |
38653298 |
agacctgtctaccaggaggttattgttgagcaagagtgggccagacatcctcccgacccattccagatcatcggcaacatcagagccagactggcgcatg |
38653397 |
T |
|
| Q |
172 |
cgatgcagattccagaggtggtttcaaat |
200 |
Q |
| |
|
| ||| ||||||| |||| |||||||||| |
|
|
| T |
38653398 |
caatggagattcctgaggaggtttcaaat |
38653426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 42704988 - 42704935
Alignment:
| Q |
94 |
ttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcatcagca |
147 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
42704988 |
ttgttgagcagcagtgggccagacatcctcccgacccataccagatcatcagca |
42704935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 3 - 301
Target Start/End: Complemental strand, 49031132 - 49030835
Alignment:
| Q |
3 |
aggtggttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctaacattgtcatgccgagacctatgtaccaggatatttttgttgacc |
102 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | |||||||||||| || |||||| |
|
|
| T |
49031132 |
aggtggttctaccatgtatcccatcctctcatcgtcaaccctgctccagagcctgacattgtcatgctgagacctgtctaccaggatattcttattgacc |
49031033 |
T |
|
| Q |
103 |
aggagtgggccagacatcctcccgatccattgcaggtcatcagcagcatttgagacagagtagagcatgcgatgcagattccagaggtggtttcaaattc |
202 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| |||||||||||||| ||| |||||| ||||||||||| |||||||||||||||||||| ||| | |
|
|
| T |
49031032 |
aggagcgggccagacatcctcccgacccattgcatgtcatcagcagcatgagaggcagagtggagcatgcgatccagattccagaggtggtttctaatcc |
49030933 |
T |
|
| Q |
203 |
actcttctttggcattttggagggcctccggcccgattacaacgtgtttgaccatcagtaggttccgaggaggaggtttaggagtcatagtccgcagga |
301 |
Q |
| |
|
||||||||| ||| || |||||||||||| ||||||| | |||||||||| ||||| ||||| |||||||||||| ||||||||||| ||||||||| |
|
|
| T |
49030932 |
actcttcttcaacatcttagagggcctccggaccgattatagcgtgtttgacgatcagcaggtt-cgaggaggaggtctaggagtcataatccgcagga |
49030835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 156 - 338
Target Start/End: Original strand, 28445843 - 28446025
Alignment:
| Q |
156 |
gacagagtagagcatgcgatgcagattccagaggtggtttcaaattcactcttctttggcattttggagggcctccggcccgattacaacgtgtttgacc |
255 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || ||||||| | ||||||||||| |
|
|
| T |
28445843 |
gacagagtgaagcatgcgatgcagattccagaggtggtttcaaatccactcttctttgacattttggagggcctctggaccgattatagcgtgtttgacc |
28445942 |
T |
|
| Q |
256 |
atcagtaggttccgaggaggaggtttaggagtcatagtccgcaggagtagcagcagtatggtcttagtcttagtttatgactt |
338 |
Q |
| |
|
||||| | |||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28445943 |
atcagcatgttccgaggacgaggtctaggagtcatattccgcaggagtagcagcagtacggtcttagtcttagtttatgactt |
28446025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 94 - 294
Target Start/End: Original strand, 48957010 - 48957210
Alignment:
| Q |
94 |
ttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcatcagcagcatttgagacagagtagagcatgcgatgcagattccagaggtggt |
193 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| || ||| ||||| ||||| |||||||||||||||| |
|
|
| T |
48957010 |
ttgttgagcaggagtgggctagacatcctcccgatccattgcaggtcatcaacagcatgagagtcaaagtggagcagacgatggagattccagaggtggt |
48957109 |
T |
|
| Q |
194 |
ttcaaattcactcttctttggcattttggagggcctccggcccgattacaacgtgtttgaccatcagtaggttccgaggaggaggtttaggagtcatagt |
293 |
Q |
| |
|
|||| || ||||||| || |||||||||||||||||| | ||||||| | |||||||||| | ||| ||||| |||||||| ||||||||||||| |
|
|
| T |
48957110 |
ttcacatccactctttttcagcattttggagggcctccagaccgattatagcgtgtttgactaggagtcagttccacggaggaggagtaggagtcatagt |
48957209 |
T |
|
| Q |
294 |
c |
294 |
Q |
| |
|
| |
|
|
| T |
48957210 |
c |
48957210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 28445789 - 28445842
Alignment:
| Q |
3 |
aggtggttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcct |
56 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
28445789 |
aggtggttctaccgtgtatcccatcctctcatcgttgaccctgctccagcgcct |
28445842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 3 - 323
Target Start/End: Original strand, 942408 - 942728
Alignment:
| Q |
3 |
aggtggttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctaacattgtcatgccgagacctatgtaccaggatatttttgttgacc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| | |||||||||||| ||||||||| |
|
|
| T |
942408 |
aggtggttctaccgtgtatcccatcctctcatcgtcaaccatgctccagagcctgacattgtcatgccgaggcctgtctaccaggatattcttgttgacc |
942507 |
T |
|
| Q |
103 |
aggagtgggccagacatcctcccgatccattgcaggtcatcagcagcatttgagacagagtagagcatgcgatgcagattccagaggtggtttcaaattc |
202 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||||||||||| || ||| ||| |||||| |||||||||||||| |||||||||||||||| ||| | |
|
|
| T |
942508 |
aggagtgggctagacatcctcccgaccctttgcaggtcatcaacaacatgagaggcagagtggagcatgcgatgcaaattccagaggtggtttttaatcc |
942607 |
T |
|
| Q |
203 |
actcttctttggcattttggagggcctccggcccgattacaacgtgtttgaccatcagtaggttccgaggaggaggtttaggagtcatagtccgcaggag |
302 |
Q |
| |
|
||||||||| ||| || |||||||||| | ||||||| | |||||||||| |||| | |||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
942608 |
actcttcttcaacatcttagagggcctccagaccgattatagcgtgtttgacgatcaacaagttccgaggaggaggtctaggagtcatagtctgcaggag |
942707 |
T |
|
| Q |
303 |
tagcagcagtatggtcttagt |
323 |
Q |
| |
|
| || ||||| ||||||||| |
|
|
| T |
942708 |
caacaacagtagggtcttagt |
942728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 28 - 323
Target Start/End: Original strand, 2026 - 2321
Alignment:
| Q |
28 |
ctctcatcgtcaaccctgctccagagcctaacattgtcatgccgagacctatgtaccaggatatttttgttgaccaggagtgggccagacatcctcccga |
127 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2026 |
ctctcatcgtcaaccctgctccagaacctgacattgtcatgccgagacctgtctaccaggatattcttgttgaccaggagtgggccagacatcctcccga |
2125 |
T |
|
| Q |
128 |
tccattgcaggtcatcagcagcatttgagacagagtagagcatgcgatgcagattccagaggtggtttcaaattcactcttctttggcattttggagggc |
227 |
Q |
| |
|
|| ||||||||||||| |||||| ||| |||||| ||||||| |||| ||||||||| ||||||||| ||| || ||||||| |||| || |||||| |
|
|
| T |
2126 |
ccctttgcaggtcatcaacagcatgagaggcagagtggagcatgtgatgaagattccaggggtggtttctaatccattcttcttcagcatcttagagggc |
2225 |
T |
|
| Q |
228 |
ctccggcccgattacaacgtgtttgaccatcagtaggttccgaggaggaggtttaggagtcatagtccgcaggagtagcagcagtatggtcttagt |
323 |
Q |
| |
|
|||||| ||||||| | |||||||||| ||||| ||||||||||||||| || |||| ||||| ||||||||||| |||| ||||| ||||||||| |
|
|
| T |
2226 |
ctccggaccgattatagcgtgtttgacgatcagcaggttccgaggaggaagtctaggggtcattgtccgcaggagcagcaacagtagggtcttagt |
2321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 1295 - 1327
Alignment:
| Q |
3 |
aggtggttctaccgtgtatcccatcctctcatc |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1295 |
aggtggttctaccgtgtatcccatcctctcatc |
1327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 3 - 279
Target Start/End: Original strand, 9387080 - 9387356
Alignment:
| Q |
3 |
aggtggttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctaacattgtcatgccgagacctatgtaccaggatatttttgttgacc |
102 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||| ||||||| |||||||||||| ||||| ||||| | |||||| | |||||||||||| ||||||||| |
|
|
| T |
9387080 |
aggtggttctactgtgtattccatcctctcatcatcaacccagctccagagcctgacattctcatgtcaagacctgtctaccaggatattcttgttgacc |
9387179 |
T |
|
| Q |
103 |
aggagtgggccagacatcctcccgatccattgcaggtcatcagcagcatttgagacagagtagagcatgcgatgcagattccagaggtggtttcaaattc |
202 |
Q |
| |
|
|||||| ||||||||||||| |||| ||||||||||||||||||||||| ||| |||||| |||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
9387180 |
aggagtaggccagacatccttccgacccattgcaggtcatcagcagcatgagaggcagagtggagcatgcgatggagattccagaggtggtttctaattt |
9387279 |
T |
|
| Q |
203 |
actcttctttggcattttggagggcctccggcccgattacaacgtgtttgaccatcagtaggttccgaggaggaggt |
279 |
Q |
| |
|
||||||||| |||| || |||||| ||| | ||||||| | |||||||||| |||| |||||||||||||||||| |
|
|
| T |
9387280 |
actcttcttcagcatcttagagggcatccagaccgattatagcgtgtttgacaatcaacaggttccgaggaggaggt |
9387356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 12947479 - 12947638
Alignment:
| Q |
94 |
ttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcatcagcagcatttgagacagagtagagcatgcgatgcagattccagaggtggt |
193 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||| ||||||| |||||| || |||||| ||||||| |||| |||| ||||||||| |
|
|
| T |
12947479 |
ttgttgagcaggagtgggtcagacatcctcccgatccattgcatgtcatcaacagcatgaaagtcagagtggagcatgtgatggggatttcagaggtggc |
12947578 |
T |
|
| Q |
194 |
ttcaaattcactcttctttggcattttggagggcctccggcccgattacaacgtgtttgac |
254 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
12947579 |
ttcaaa-tcactctttttcaacattttggagggcctccggtctgattattccgtgtttgac |
12947638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 9099 - 8870
Alignment:
| Q |
3 |
aggtggttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctaacattgtcatgccgagacctatgtaccaggatatttttgttgacc |
102 |
Q |
| |
|
||||||||||| | |||||| |||||||| |||||||| |||||| |||| || |||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
9099 |
aggtggttctatcatgtatcacatcctcttctcgtcaacactgctcaagagtctgacattgtcatgccgagacctgtctaccaggatattcttgttgacc |
9000 |
T |
|
| Q |
103 |
aggagtgggccagacatcctcccgatccattgcaggtcatcagcagcatttgagacagagtagagcatgcgatgcagattccagaggtggtttcaaattc |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| | |||||| ||| ||| || || ||||||||||||||||| |||||||||||||| | |
|
|
| T |
8999 |
aggagtgggccagacatcatcccgatccattgcaggtcattaccagcatgcgaggcagggtggaacatgcgatgcagattccgaaggtggtttcaaatcc |
8900 |
T |
|
| Q |
203 |
actcttctttggcattttggagggcctccg |
232 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
8899 |
actcttcttcggcattttggagggcctccg |
8870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 165 - 323
Target Start/End: Complemental strand, 24212 - 24054
Alignment:
| Q |
165 |
gagcatgcgatgcagattccagaggtggtttcaaattcactcttctttggcattttggagggcctccggcccgattacaacgtgtttgaccatcagtagg |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| |||| || |||||||||||| |||||| | |||||||||| ||||| ||| |
|
|
| T |
24212 |
gagcatgcgatgcagattccagaggtggtttctaatccactcttcttcagcatcttagagggcctccggaacgattatagcgtgtttgacgatcagcagg |
24113 |
T |
|
| Q |
265 |
ttccgaggaggaggtttaggagtcatagtccgcaggagtagcagcagtatggtcttagt |
323 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
24112 |
ttccgaggaggaggtataggagtcatagtccgcaggagcagcagtagtagggtcttagt |
24054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 165 - 323
Target Start/End: Complemental strand, 41799290 - 41799132
Alignment:
| Q |
165 |
gagcatgcgatgcagattccagaggtggtttcaaattcactcttctttggcattttggagggcctccggcccgattacaacgtgtttgaccatcagtagg |
264 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| |||||||||| |||| || |||||||||||| |||||| | |||||||||| ||||| ||| |
|
|
| T |
41799290 |
gagcatgcgatgcagattccagatgtggtttctaatccactcttcttgagcatcttagagggcctccggatcgattatagcgtgtttgacgatcagcagg |
41799191 |
T |
|
| Q |
265 |
ttccgaggaggaggtttaggagtcatagtccgcaggagtagcagcagtatggtcttagt |
323 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
41799190 |
ttccgaggaggaggtctaggagtcatagtccgcaagagcagcagcagtagggtcttagt |
41799132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 1326695 - 1326642
Alignment:
| Q |
94 |
ttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcatcagca |
147 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
1326695 |
ttgttgagcagcagtgggccagacatcctcccgacccatatcagatcatcagca |
1326642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 16827 - 16774
Alignment:
| Q |
94 |
ttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcatcagca |
147 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
16827 |
ttgttgagcagcagtgggccagacatcctcccgacccataccagatcatcagca |
16774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University