View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_64 (Length: 376)
Name: NF10140A_low_64
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 43104614 - 43104255
Alignment:
| Q |
7 |
ggctgatacttcaattgttttaagagtaaatttacctaaatttctagtaaattcacttactcatattatttggataattttcataaacttgagaggaatg |
106 |
Q |
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| T |
43104614 |
ggctgatacttcaattgttttaagagtaaatttacctaaatttctagtaaattcacttacacatattatttggataattttcataaacttgagaggaatg |
43104515 |
T |
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| Q |
107 |
gtaagcttctaggtttgattnnnnnnn-----ttcaaaattctgggctaatatgtgattgtgttgtcattgtttaccaattgttttttataatggtcttc |
201 |
Q |
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| T |
43104514 |
gtaagcttctaggtttgatttttttcccccccttcaaaattcagggctaatatgtgattgtgttgtcattgtttaccaattgttttttataatggtcttc |
43104415 |
T |
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| Q |
202 |
atgtggtaataatctacattgttcatcttgtggatgcagatggtgctggtggtaagggcacttgggggaaattgctggacacagaagttgattctcacat |
301 |
Q |
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| T |
43104414 |
atgtggtaataatctacattgttcatcttgtggatgcagatggtgctggtggtaagggcacttgggggaaattgctggacacagaagttgattctcacat |
43104315 |
T |
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| Q |
302 |
agaccgcaatgatccaaattacgatagtggcgaggtgaagtatttttcgatcattctgat |
361 |
Q |
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| T |
43104314 |
agaccgcaatgatccaaattacgatagtggcgaggtgaagtatttttcgatcattctgat |
43104255 |
T |
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