View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_65 (Length: 376)
Name: NF10140A_low_65
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 13039789 - 13039429
Alignment:
| Q |
1 |
tcagcagacatgtagaagcggtgtgtggagggacaatagcaccgatatcctttttgaactcttgtatagcctagaaagacacatttaattgcacgagcac |
100 |
Q |
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| T |
13039789 |
tcagcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattttacgagcac |
13039690 |
T |
|
| Q |
101 |
acaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaacccgaggagcaatacgaaacaaaggttcatcagggaacaatatgga |
200 |
Q |
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| T |
13039689 |
acaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaatccgaggagcaatacgaaacaaaggttcatcagggaacaatatgga |
13039590 |
T |
|
| Q |
201 |
atggggaaccttgttttggtttgcagatgatggcattctattaatcaagtatcctgtagtgaggacaacatcaccccaaaatttcaaaggaacattgact |
300 |
Q |
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| T |
13039589 |
atggggaaccttgttttggattacagatgatggcattctattaatcaagtatcctgtagtgaggacagcatcaccccaaaatttcaaaggaacattggca |
13039490 |
T |
|
| Q |
301 |
ttaataagcaaagtacgtgttgtttcaattatatgacggtgtttaagttcagcaatgccat |
361 |
Q |
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| T |
13039489 |
ttaataagcaaagtacgtgttgtttcaattatatgacgatgtttacgttcaacaatgccat |
13039429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 20705321 - 20705207
Alignment:
| Q |
101 |
acaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaacccgaggagcaatacgaaacaaaggttcatcagggaacaatatgga |
200 |
Q |
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| T |
20705321 |
acaacttatctaaacctggaaaaagatcatgaacaaaacaagtacttccaaaaacacgtggattaatatgaaacaaaggttctttaggaaataagatgga |
20705222 |
T |
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| Q |
201 |
atggggaaccttgtt |
215 |
Q |
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| T |
20705221 |
gtgaggaactttgtt |
20705207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 17725184 - 17724811
Alignment:
| Q |
1 |
tcagcagacatgtagaagcggtgtgtggagggacaatagcaccgatatcctttttgaactcttgtatagcctagaaagacacatttaattgcacgagcac |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17725184 |
tcagcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattgcacgagcac |
17725085 |
T |
|
| Q |
101 |
acaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaacccgaggagcaatacgaaacaaaggttcatcagggaacaatatgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17725084 |
acaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaatccgaggagcaatacgaaacaaaggttcatcagggaacaatatgga |
17724985 |
T |
|
| Q |
201 |
atggggaaccttgttttggtttgcagatgatggcattctatt-------------aatcaagtatcctgtagtgaggacaacatcaccccaaaatttcaa |
287 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
17724984 |
atggggaaccttgttttggattgcagatgatggcattctattaatccattctatcaatcaagtatcctgcagtgaggacagcatcaccccaaaatttcaa |
17724885 |
T |
|
| Q |
288 |
aggaacattgactttaataagcaaagtacgtgttgtttcaattatatgacggtgtttaagttcagcaatgccat |
361 |
Q |
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|||||||||| | | ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17724884 |
aggaacattggcatgaataagcaaagtacgtgctgtttcaattatatgacggtgtttacgttcagcaatgccat |
17724811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 11025854 - 11025985
Alignment:
| Q |
8 |
acatgtagaagcggtgtgtggagggacaatagcaccgatatcctttttgaactcttgtatagcctagaaagacacatttaattgcacgagcacacaattt |
107 |
Q |
| |
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|||||||||||| || || || |||||||||||| ||||||||| | |||||||| || || |||||||||||||||| |||||||||| ||| ||| |
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| T |
11025854 |
acatgtagaagctatgcgttgatggacaatagcacttatatcctttctaaactcttgaatcgctgagaaagacacatttaactgcacgagcaaacatttt |
11025953 |
T |
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| Q |
108 |
atctaaacctggagtaagatcatgaacaaagc |
139 |
Q |
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|||||||||| ||||||||||||||| ||||| |
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| T |
11025954 |
atctaaaccttgagtaagatcatgaataaagc |
11025985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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