View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_74 (Length: 362)
Name: NF10140A_low_74
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 48290557 - 48290906
Alignment:
| Q |
8 |
agagatgaatgagctaacgttgatgaaagcaaatacagtggttgatgttatcaattaaatgaaatgaaatgccctaaaagtttagacattatcaaccaaa |
107 |
Q |
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| T |
48290557 |
agagatgaatgagctaacgttgatgaaagcaattacagtggttgatgttatcaattaaatgaaatgaaatgccctaaaagtttagacattatcaaccaaa |
48290656 |
T |
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| Q |
108 |
aaaggcagtagtgttggctaattgtgatttttgcaagctaagctataatcaatttactattaattataactagattaaagatgctacatctctttcttca |
207 |
Q |
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| T |
48290657 |
aaaggcagtagtgttggctaattgtgatttttgcaagctaagctataatcaatttactattaattataactagattaaagatgctacatctctttcttca |
48290756 |
T |
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| Q |
208 |
tgtccctttccatttacaccactcattgcaagctttgaacgcttcttatatttcttattatcaacatctacctctttaattttctgttttctcaaacctt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48290757 |
tgtccctttccatttacaccactcattgcaagctttgaacgcttcttatatttcttattatcaacatctacctctttaattttctgttttctcaaacctt |
48290856 |
T |
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| Q |
308 |
cttcacatttaattaatttcatcaattttggccaataaaaggagagaaat |
357 |
Q |
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| T |
48290857 |
cttcacatttaattaatttcatcaattttgaccaataaaaggagagaaat |
48290906 |
T |
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