View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_79 (Length: 359)
Name: NF10140A_low_79
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_79 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 32 - 350
Target Start/End: Complemental strand, 55419402 - 55419080
Alignment:
| Q |
32 |
taacacgtgggcatactttgaaaataattgctcttttcctatttgtttttgcccattcctttcctatgtgagttcataccgaaaaatgcacctatgtgag |
131 |
Q |
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| T |
55419402 |
taacacgtgggcatactttgaaaataattgctcttttcctatttgtttttgcccattcctttcctatgtgagttcataccgaaaaatgcacttatgtgag |
55419303 |
T |
|
| Q |
132 |
ttaactcacgttgaaaatgcatcaactctcgtttggcnnnnnnnnnnn---atgggaacgaacaattctaaacaggagaagagcaattctctactttgaa |
228 |
Q |
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| T |
55419302 |
ttaactcacgttgaaaatacatcaactcacgtttggtttttattttattttatgggaatgagcaattctaaaaaggagaagagcaattctctactttgaa |
55419203 |
T |
|
| Q |
229 |
aggaacaaccttcctttattgagcagaaacat-aagaaaattgctcaccttaggcagtcagtgaatcaatcaccatgggttctctttcagttgttttact |
327 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55419202 |
aggaacaaccttcctttattgagcagaaacattaagaaaattgctcaccttagtcagtcagtgaatcaatcaccatgggttctctttcagttgttttact |
55419103 |
T |
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| Q |
328 |
gaaaggggtagatgtattttgtt |
350 |
Q |
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|||||||||| |||||| ||||| |
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| T |
55419102 |
gaaaggggtaaatgtatgttgtt |
55419080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 220 - 337
Target Start/End: Complemental strand, 11167901 - 11167787
Alignment:
| Q |
220 |
tactttgaaaggaacaaccttcctttattgagcagaaacat-aagaaaattgctcaccttaggcagtcagtgaatcaatcaccatgggttctctttcagt |
318 |
Q |
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| T |
11167901 |
tactttgaaacgaaccaccttcctctgttgagcagaaacatcaagaaaattgctcaccttag----tcagtgaatcaatcaccctaggttctctttcggt |
11167806 |
T |
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| Q |
319 |
tgttttactgaaaggggta |
337 |
Q |
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| T |
11167805 |
tgttttactgaaaggggta |
11167787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 14210714 - 14210672
Alignment:
| Q |
112 |
gaaaaatgcacctatgtgagttaactcacgttgaaaatgcatc |
154 |
Q |
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| T |
14210714 |
gaaaaatacacctatgtgagttaactcacgttgaaaatgcatc |
14210672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 42096807 - 42096769
Alignment:
| Q |
112 |
gaaaaatgcacctatgtgagttaactcacgttgaaaatg |
150 |
Q |
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| T |
42096807 |
gaaaaatgcacctatgtgagttaactcacgttgaaaatg |
42096769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 30212013 - 30211975
Alignment:
| Q |
114 |
aaaatgcacctatgtgagttaactcacgttgaaaatgca |
152 |
Q |
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| T |
30212013 |
aaaatgcacctacgtgagttaactcacgttgaaaatgca |
30211975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 37182220 - 37182260
Alignment:
| Q |
112 |
gaaaaatgcacctatgtgagttaactcacgttgaaaatgca |
152 |
Q |
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| T |
37182220 |
gaaaaatacacctacgtgagttaactcacgttgaaaatgca |
37182260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 2904791 - 2904754
Alignment:
| Q |
112 |
gaaaaatgcacctatgtgagttaactcacgttgaaaat |
149 |
Q |
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| T |
2904791 |
gaaaaatacacctacgtgagttaactcacgttgaaaat |
2904754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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