View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_8 (Length: 481)
Name: NF10140A_low_8
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_8 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 9 - 462
Target Start/End: Original strand, 87361 - 87814
Alignment:
| Q |
9 |
gagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccag |
108 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87361 |
gagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccag |
87460 |
T |
|
| Q |
109 |
aagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattcc |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87461 |
aagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattcc |
87560 |
T |
|
| Q |
209 |
atgtagagttgaagctataagatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagtttt |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||| |
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| T |
87561 |
atgtagagttgaagctataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagtttt |
87660 |
T |
|
| Q |
309 |
gataatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtg |
408 |
Q |
| |
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|||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87661 |
gataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtg |
87760 |
T |
|
| Q |
409 |
gcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87761 |
gcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
87814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 9 - 462
Target Start/End: Original strand, 95391 - 95830
Alignment:
| Q |
9 |
gagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccag |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||| |
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| T |
95391 |
gagatgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgccag |
95476 |
T |
|
| Q |
109 |
aagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattcc |
208 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
95477 |
aagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcattcc |
95576 |
T |
|
| Q |
209 |
atgtagagttgaagctataagatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagtttt |
308 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||| |
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|
| T |
95577 |
atgtagagttgaagatataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagtttt |
95676 |
T |
|
| Q |
309 |
gataatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtg |
408 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95677 |
gataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtg |
95776 |
T |
|
| Q |
409 |
gcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |
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|
| T |
95777 |
gcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggactatt |
95830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 9 - 462
Target Start/End: Complemental strand, 40878922 - 40878469
Alignment:
| Q |
9 |
gagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40878922 |
gagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccag |
40878823 |
T |
|
| Q |
109 |
aagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattcc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878822 |
aagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattcc |
40878723 |
T |
|
| Q |
209 |
atgtagagttgaagctataagatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagtttt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||| |
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|
| T |
40878722 |
atgtagagttgaagctataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagtttt |
40878623 |
T |
|
| Q |
309 |
gataatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtg |
408 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878622 |
gataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtg |
40878523 |
T |
|
| Q |
409 |
gcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40878522 |
gcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
40878469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 9 - 462
Target Start/End: Complemental strand, 40870891 - 40870452
Alignment:
| Q |
9 |
gagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccag |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||| |
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| T |
40870891 |
gagatgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgccag |
40870806 |
T |
|
| Q |
109 |
aagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattcc |
208 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
40870805 |
aagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcattcc |
40870706 |
T |
|
| Q |
209 |
atgtagagttgaagctataagatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagtttt |
308 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||| |
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|
| T |
40870705 |
atgtagagttgaagatataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagtttt |
40870606 |
T |
|
| Q |
309 |
gataatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtg |
408 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40870605 |
gataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtg |
40870506 |
T |
|
| Q |
409 |
gcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
40870505 |
gcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggactatt |
40870452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 451
Target Start/End: Complemental strand, 40352777 - 40352688
Alignment:
| Q |
362 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcg |
451 |
Q |
| |
|
||||||||| || || |||||||| |||||||||||||||||||| || || ||| ||||||||| ||||| |||||| |||||||||| |
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|
| T |
40352777 |
atcttttgcaaagactttgacacagtctgatgcaaacaatggtggagggttctctgttcctagatactgtgctgaaacgatttttcctcg |
40352688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 457
Target Start/End: Original strand, 28346744 - 28346823
Alignment:
| Q |
378 |
ttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttgga |
457 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || |||||| |||||| |||||||| || ||| |||| ||||||||||| |
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| T |
28346744 |
ttgactcaatctgatgctaacaatggtggaggtttttctgttcctaggtattgtgccgagacgattttccctcgtttgga |
28346823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 462
Target Start/End: Original strand, 42730140 - 42730239
Alignment:
| Q |
363 |
tcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
462 |
Q |
| |
|
|||||||| || || || |||||||||||||||||||| ||||| || |||||| ||||||||| ||||| || || |||||||| | ||||| |||| |
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|
| T |
42730140 |
tcttttgcaaagacattaacacaatctgatgcaaacaacggtggaggtttttctgttcctagatactgtgctgagactatttttcctaggttggattatt |
42730239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 21715642 - 21715696
Alignment:
| Q |
362 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttct |
416 |
Q |
| |
|
||||||||| || || ||||| ||||||||||||||||||||||| || |||||| |
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|
| T |
21715642 |
atcttttgctaagactttgactcaatctgatgcaaacaatggtggggggttttct |
21715696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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