View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_83 (Length: 356)
Name: NF10140A_low_83
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_83 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 13 - 341
Target Start/End: Complemental strand, 957511 - 957183
Alignment:
| Q |
13 |
ccaagaatatcagcatctatcggtcgtatctgtatcaatatcatctgaaagagaattggtcccatctgacaacggggttcagcctaccgaagattgtccc |
112 |
Q |
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| T |
957511 |
ccaagaacatcagcatctatcggtcgtatctgtatcaatatcatctgaaagagaattggtcccatctgacaacggggttcagcctaccgaagattgtccc |
957412 |
T |
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| Q |
113 |
cagccaatagcttacatggctactgaagatttcaatcagaatagccccaaaaagaaaaggtaagcgaagttgtcgattatcctgctttatgcttgaaaat |
212 |
Q |
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| T |
957411 |
cagccaatagcttacatggctactgaagatttcaatcagaatagccccaaaaagaaaaggtaagcgaagttgtcgattatcctgctttatgcttgaaaat |
957312 |
T |
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| Q |
213 |
tccatctcattgatttcttttcattatacttatactaagcttggatatgcaggcgtaagtcagagccagtcggagaaattgagggctgcaaacgttgtaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
957311 |
tccatctcattgatttcttttcattatacttatactaaacttggatatgcaggcgtaagtcagagccagtcggagaaattgagggctgcaaacgttgtaa |
957212 |
T |
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| Q |
313 |
ttgcaagaaatcaaagtgcttgaagctgt |
341 |
Q |
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| T |
957211 |
ttgcaagaaatcaaagtgcttgaagctgt |
957183 |
T |
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